Wall clock time and date at job start Tue Mar 31 2020 18:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30852 * 125.41791 * 2 1 4 4 C 1.33314 * 109.68680 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.10882 * 180.02562 * 4 3 2 6 6 C 1.36666 * 107.78510 * 0.02562 * 4 3 2 7 7 C 1.46768 * 126.84353 * 180.02562 * 6 4 3 8 8 O 1.21682 * 119.99699 * 35.87366 * 7 6 4 9 9 N 1.34776 * 119.99701 * 215.87483 * 7 6 4 10 10 C 1.46923 * 120.63427 * 2.88327 * 9 7 6 11 11 C 1.53182 * 108.77558 * 126.37118 * 10 9 7 12 12 C 1.53036 * 109.31557 * 54.63810 * 11 10 9 13 13 C 1.53044 * 109.53729 * 298.63588 * 12 11 10 14 14 H 1.09005 * 109.49646 * 301.41243 * 13 12 11 15 15 C 1.52996 * 109.50115 * 181.34573 * 13 12 11 16 16 C 1.46926 * 120.62779 * 182.60807 * 9 7 6 17 17 H 1.09009 * 109.58694 * 113.84070 * 16 9 7 18 18 C 1.53000 * 109.58759 * 353.41466 * 16 9 7 19 19 C 1.52998 * 109.47078 * 292.10046 * 18 16 9 20 20 N 1.46502 * 109.47027 * 172.38585 * 19 18 16 21 21 C 1.36939 * 120.00299 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99207 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00342 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99832 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00119 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.47147 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47610 * 120.00016 * 25 23 21 28 28 H 1.48503 * 109.46773 * 240.00420 * 25 23 21 29 29 N 1.34491 * 125.41693 * 180.02562 * 2 1 3 30 30 H 0.97002 * 126.47485 * 359.71912 * 29 2 1 31 31 H 1.09006 * 109.47554 * 269.97118 * 1 2 3 32 32 H 1.09003 * 109.47537 * 29.97294 * 1 2 3 33 33 H 1.09001 * 109.47571 * 149.97090 * 1 2 3 34 34 H 1.09003 * 109.47013 * 89.97576 * 5 4 3 35 35 H 1.09003 * 109.47191 * 209.97802 * 5 4 3 36 36 H 1.08997 * 109.47092 * 329.97738 * 5 4 3 37 37 H 1.08997 * 109.58706 * 246.16163 * 10 9 7 38 38 H 1.09001 * 109.58636 * 6.43907 * 10 9 7 39 39 H 1.08998 * 109.50155 * 174.58791 * 11 10 9 40 40 H 1.09002 * 109.50086 * 294.68688 * 11 10 9 41 41 H 1.08998 * 109.45909 * 58.65175 * 12 11 10 42 42 H 1.08993 * 109.46478 * 178.61644 * 12 11 10 43 43 H 1.09012 * 109.47090 * 59.99686 * 15 13 12 44 44 H 1.09001 * 109.47630 * 179.97438 * 15 13 12 45 45 H 1.08993 * 109.47248 * 300.00264 * 15 13 12 46 46 H 1.08999 * 109.46961 * 52.10194 * 18 16 9 47 47 H 1.09003 * 109.47435 * 172.09642 * 18 16 9 48 48 H 1.08996 * 109.47198 * 292.38813 * 19 18 16 49 49 H 1.09002 * 109.47040 * 52.39047 * 19 18 16 50 50 H 0.96999 * 120.00003 * 0.02562 * 20 19 18 51 51 H 0.97002 * 119.99697 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7049 -0.0006 5 6 4.7335 1.6361 -0.0002 6 6 3.5975 -0.6609 -0.0015 7 6 4.8028 -1.4983 -0.0019 8 8 5.7895 -1.1445 0.6161 9 7 4.8167 -2.6590 -0.6867 10 6 3.6559 -3.0690 -1.4886 11 6 4.1246 -3.3728 -2.9150 12 6 5.2525 -4.4061 -2.8679 13 6 6.4357 -3.8368 -2.0817 14 1 6.7784 -2.9169 -2.5555 15 6 7.5754 -4.8573 -2.0637 16 6 5.9953 -3.5355 -0.6503 17 1 5.7421 -4.4676 -0.1450 18 6 7.1320 -2.8357 0.0974 19 6 7.6220 -1.6405 -0.7225 20 7 8.5805 -0.8654 0.0691 21 6 9.1574 0.2574 -0.4616 22 1 8.9054 0.5717 -1.4637 23 6 10.0661 0.9916 0.2882 24 7 10.3736 0.6082 1.5092 25 14 10.8524 2.5236 -0.4356 26 1 10.3433 2.7372 -1.8142 27 1 10.5127 3.6991 0.4057 28 1 12.3270 2.3520 -0.4741 29 7 2.2864 -1.0960 -0.0005 30 1 1.9849 -2.0180 0.0029 31 1 -0.3634 -0.0005 1.0277 32 1 -0.3634 0.8902 -0.5134 33 1 -0.3634 -0.8897 -0.5143 34 1 5.0191 1.8602 1.0276 35 1 5.5691 1.1610 -0.5142 36 1 4.4693 2.5605 -0.5137 37 1 3.2080 -3.9622 -1.0531 38 1 2.9215 -2.2637 -1.5067 39 1 3.2915 -3.7699 -3.4949 40 1 4.4892 -2.4573 -3.3810 41 1 4.8944 -5.3124 -2.3796 42 1 5.5711 -4.6424 -3.8831 43 1 7.8878 -5.0711 -3.0860 44 1 8.4180 -4.4513 -1.5040 45 1 7.2325 -5.7765 -1.5889 46 1 6.7707 -2.4887 1.0654 47 1 7.9542 -3.5358 0.2462 48 1 8.1060 -1.9974 -1.6315 49 1 6.7738 -1.0087 -0.9863 50 1 8.8071 -1.1479 0.9690 51 1 11.0088 1.1210 2.0331 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264517618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:53 Heat of formation + Delta-G solvation = 62.240576 kcal Electronic energy + Delta-G solvation = -31271.239395 eV Core-core repulsion = 27401.036371 eV Total energy + Delta-G solvation = -3870.203024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.38320 -40.51425 -37.55147 -35.22947 -33.92928 -33.20702 -32.70325 -32.03612 -30.78660 -29.13661 -28.56358 -26.54113 -26.47083 -24.84205 -23.35352 -22.15868 -21.63705 -21.43499 -20.96626 -19.49759 -18.99127 -17.47042 -16.74840 -16.45629 -16.06221 -15.53152 -15.18615 -14.86086 -14.62050 -14.39125 -14.08309 -13.96244 -13.53437 -13.29197 -13.16832 -13.06244 -12.98467 -12.77884 -12.53194 -12.49402 -12.46854 -12.27499 -11.91370 -11.75465 -11.71109 -11.36465 -11.09579 -10.92504 -10.83533 -10.65290 -10.54977 -10.22397 -10.18640 -10.06890 -9.86895 -9.77927 -9.48532 -8.80455 -8.66261 -8.31173 -8.20858 -6.57479 -5.53504 -2.77643 1.45806 2.66322 2.84048 2.97798 3.46894 3.56113 3.61233 3.63590 4.19078 4.46410 4.55660 4.69114 4.71967 4.78919 4.82376 4.90488 5.07024 5.13574 5.14647 5.19665 5.32299 5.39014 5.48216 5.53132 5.57466 5.59402 5.64445 5.72733 5.77849 5.81805 5.84256 5.96843 6.01588 6.12985 6.18199 6.25669 6.28059 6.33536 6.39868 6.50026 6.60083 6.65093 6.75309 6.80713 7.16380 7.20754 7.30785 7.48967 7.89340 7.97437 8.43987 8.66397 9.76904 10.42629 10.76955 11.70254 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.004837 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.622441 B = 5787.037568 C = 8064.171365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.223 3.777 3 N -0.492 5.492 4 C 0.093 3.907 5 C -0.074 4.074 6 C -0.081 4.081 7 C 0.573 3.427 8 O -0.453 6.453 9 N -0.609 5.609 10 C 0.099 3.901 11 C -0.133 4.133 12 C -0.113 4.113 13 C -0.110 4.110 14 H 0.086 0.914 15 C -0.144 4.144 16 C 0.163 3.837 17 H 0.066 0.934 18 C -0.134 4.134 19 C 0.175 3.825 20 N -0.721 5.721 21 C -0.221 4.221 22 H 0.064 0.936 23 C -0.019 4.019 24 N -0.935 5.935 25 Si 0.899 3.101 26 H -0.282 1.282 27 H -0.293 1.293 28 H -0.295 1.295 29 N -0.556 5.556 30 H 0.418 0.582 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.103 0.897 47 H 0.054 0.946 48 H -0.002 1.002 49 H 0.024 0.976 50 H 0.382 0.618 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.001 -12.448 -7.214 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.040 4.040 3 N -0.214 5.214 4 C -0.039 4.039 5 C -0.131 4.131 6 C -0.196 4.196 7 C 0.359 3.641 8 O -0.324 6.324 9 N -0.345 5.345 10 C -0.025 4.025 11 C -0.172 4.172 12 C -0.151 4.151 13 C -0.129 4.129 14 H 0.104 0.896 15 C -0.202 4.202 16 C 0.061 3.939 17 H 0.084 0.916 18 C -0.171 4.171 19 C 0.047 3.953 20 N -0.364 5.364 21 C -0.353 4.353 22 H 0.082 0.918 23 C -0.214 4.214 24 N -0.585 5.585 25 Si 0.731 3.269 26 H -0.208 1.208 27 H -0.221 1.221 28 H -0.222 1.222 29 N -0.165 5.165 30 H 0.258 0.742 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.121 0.879 47 H 0.072 0.928 48 H 0.016 0.984 49 H 0.042 0.958 50 H 0.215 0.785 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.644 -11.288 -6.973 25.387 hybrid contribution 0.496 -0.586 -0.197 0.793 sum -21.148 -11.874 -7.170 25.291 Atomic orbital electron populations 1.20242 0.84590 1.04204 1.03789 1.23330 0.95641 0.81784 1.03252 1.70055 1.01845 1.28250 1.21237 1.21109 0.92963 0.90375 0.99496 1.20215 0.92375 0.96832 1.03709 1.21130 0.83695 0.95610 1.19151 1.16982 0.85892 0.80174 0.81063 1.91143 1.31026 1.68969 1.41221 1.47938 1.16672 1.21018 1.48836 1.21879 0.88620 1.00084 0.91907 1.21882 0.98969 1.00426 0.95884 1.21588 0.95198 0.97753 1.00521 1.21594 0.95284 1.00261 0.95784 0.89553 1.21784 0.98396 0.98117 1.01880 1.21220 0.84963 0.92023 0.95728 0.91589 1.22433 0.95200 0.97429 1.02075 1.20733 0.91803 0.90574 0.92155 1.42212 1.49067 1.28835 1.16281 1.19228 1.17124 1.01143 0.97755 0.91760 1.24647 1.00913 0.99399 0.96426 1.69681 1.38284 1.40893 1.09649 0.86212 0.78936 0.83754 0.77972 1.20784 1.22054 1.22225 1.43508 1.06080 1.09795 1.57089 0.74168 0.89899 0.88830 0.90735 0.90172 0.89648 0.91365 0.91724 0.90190 0.91029 0.91172 0.92091 0.91687 0.92673 0.91381 0.93032 0.87863 0.92770 0.98449 0.95825 0.78529 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.51 36.00 0.38 -0.06 16 2 C 0.22 2.51 8.12 -155.62 -1.26 1.25 16 3 N -0.49 -7.53 11.20 -6.85 -0.08 -7.60 16 4 C 0.09 1.56 7.14 -82.51 -0.59 0.97 16 5 C -0.07 -1.31 9.83 36.01 0.35 -0.95 16 6 C -0.08 -1.21 6.08 -82.14 -0.50 -1.71 16 7 C 0.57 9.35 6.24 -12.81 -0.08 9.27 16 8 O -0.45 -9.32 9.58 5.20 0.05 -9.27 16 9 N -0.61 -7.91 2.93 -166.98 -0.49 -8.40 16 10 C 0.10 0.89 5.60 -3.72 -0.02 0.87 16 11 C -0.13 -1.16 6.08 -26.62 -0.16 -1.32 16 12 C -0.11 -1.03 5.17 -26.69 -0.14 -1.17 16 13 C -0.11 -1.33 1.93 -90.72 -0.18 -1.51 16 14 H 0.09 1.28 6.14 -51.93 -0.32 0.96 16 15 C -0.14 -1.64 8.97 37.16 0.33 -1.31 16 16 C 0.16 2.21 2.65 -67.82 -0.18 2.03 16 17 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 18 C -0.13 -2.40 4.16 -26.73 -0.11 -2.52 16 19 C 0.17 3.83 4.19 -4.04 -0.02 3.81 16 20 N -0.72 -19.70 5.49 -59.91 -0.33 -20.03 16 21 C -0.22 -6.55 9.99 -15.06 -0.15 -6.70 16 22 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 16 24 N -0.93 -29.87 13.06 55.49 0.72 -29.15 16 25 Si 0.90 23.64 29.55 -169.99 -5.02 18.61 16 26 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 28 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 29 N -0.56 -5.90 4.72 -7.02 -0.03 -5.93 16 30 H 0.42 2.97 7.42 -40.82 -0.30 2.67 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.70 7.56 -51.93 -0.39 1.31 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.69 4.59 -51.93 -0.24 0.45 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 44 H 0.07 0.92 6.79 -51.93 -0.35 0.56 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.10 2.10 5.69 -53.36 -0.30 1.80 16 47 H 0.05 0.95 7.02 -51.93 -0.36 0.59 16 48 H 0.00 -0.04 6.68 -51.93 -0.35 -0.39 16 49 H 0.02 0.55 5.39 -51.93 -0.28 0.27 16 50 H 0.38 11.15 7.67 -40.82 -0.31 10.84 16 51 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 386.97 15.07 5.83 5.83 Total: -1.00 -36.27 386.97 -10.02 -46.28 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -8.26 Total: 9.37 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.42 Total: 0.28 kcal Atomic # 7 Polarization: -70.91 SS G_CDS: -0.20 Total: -71.11 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.05 Total: -9.27 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.02 Total: 18.61 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.27 -10.02 -46.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264517618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.525 kcal (2) G-P(sol) polarization free energy of solvation -36.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds