Wall clock time and date at job start Tue Mar 31 2020 18:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.52326 * 2 1 4 4 C 1.53194 * 109.49858 * 120.08028 * 2 1 3 5 5 N 1.46926 * 108.77186 * 65.31693 * 4 2 1 6 6 C 1.36939 * 120.62747 * 233.58348 * 5 4 2 7 7 H 1.07998 * 120.00237 * 25.19938 * 6 5 4 8 8 C 1.38816 * 119.99817 * 205.19661 * 6 5 4 9 9 N 1.31618 * 119.99601 * 202.60034 * 8 6 5 10 10 Si 1.86796 * 119.99958 * 22.59623 * 8 6 5 11 11 H 1.48501 * 109.47089 * 264.61711 * 10 8 6 12 12 H 1.48504 * 109.47355 * 24.61546 * 10 8 6 13 13 H 1.48503 * 109.47120 * 144.61863 * 10 8 6 14 14 C 1.46924 * 118.73892 * 53.86166 * 5 4 2 15 15 C 1.53620 * 108.54439 * 306.09098 * 14 5 4 16 16 C 1.53032 * 109.50154 * 239.92133 * 2 1 3 17 17 H 1.08992 * 109.46606 * 181.40819 * 16 2 1 18 18 N 1.46505 * 109.46181 * 61.42843 * 16 2 1 19 19 C 1.34772 * 119.99958 * 154.99754 * 18 16 2 20 20 O 1.21281 * 120.00303 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00116 * 180.02562 * 19 18 16 22 22 C 1.52999 * 109.47556 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.47258 * 180.02562 * 22 21 19 24 24 N 1.46500 * 109.47082 * 179.97438 * 23 22 21 25 25 C 1.34955 * 126.03684 * 124.71431 * 24 23 22 26 26 C 1.35309 * 107.74556 * 179.84201 * 25 24 23 27 27 C 1.39871 * 107.92070 * 0.42228 * 26 25 24 28 28 N 1.30840 * 108.20443 * 359.73905 * 27 26 25 29 29 H 1.09008 * 109.47121 * 299.92105 * 1 2 3 30 30 H 1.08998 * 109.47413 * 59.91750 * 1 2 3 31 31 H 1.08997 * 109.47416 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47002 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47275 * 300.08528 * 3 2 1 34 34 H 1.09010 * 109.46894 * 60.08296 * 3 2 1 35 35 H 1.09006 * 109.58756 * 305.53014 * 4 2 1 36 36 H 1.09000 * 109.58812 * 185.10555 * 4 2 1 37 37 H 0.97006 * 119.99675 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.58551 * 65.92916 * 14 5 4 39 39 H 1.08996 * 109.58461 * 186.34766 * 14 5 4 40 40 H 1.08993 * 109.63318 * 294.86530 * 15 14 5 41 41 H 1.08997 * 109.45818 * 174.74065 * 15 14 5 42 42 H 0.96997 * 119.99700 * 335.00733 * 18 16 2 43 43 H 1.09002 * 109.47358 * 300.00918 * 21 19 18 44 44 H 1.09006 * 109.46600 * 60.00376 * 21 19 18 45 45 H 1.09003 * 109.46409 * 300.00254 * 22 21 19 46 46 H 1.08999 * 109.47123 * 60.00069 * 22 21 19 47 47 H 1.09002 * 109.47176 * 299.99856 * 23 22 21 48 48 H 1.08999 * 109.47329 * 59.99789 * 23 22 21 49 49 H 1.07999 * 126.12322 * 359.97438 * 25 24 23 50 50 H 1.07998 * 126.04373 * 180.16450 * 26 25 24 51 51 H 1.08006 * 125.89948 * 179.75976 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6515 -2.1381 1.1695 6 6 0.9639 -2.7314 2.1945 7 1 0.3578 -2.1312 2.8568 8 6 1.0460 -4.1044 2.3821 9 7 0.0940 -4.7374 3.0343 10 14 2.5074 -5.0533 1.7090 11 1 2.1602 -5.6208 0.3813 12 1 3.6690 -4.1389 1.5679 13 1 2.8549 -6.1547 2.6425 14 6 2.0189 -2.9054 -0.0284 15 6 1.5030 -2.1557 -1.2660 16 6 2.0409 -0.7230 -1.2483 17 1 3.1305 -0.7445 -1.2351 18 7 1.5811 -0.0144 -2.4453 19 6 2.2698 -0.1226 -3.5987 20 8 3.2700 -0.8070 -3.6458 21 6 1.7972 0.6068 -4.8298 22 6 2.7493 0.3163 -5.9917 23 6 2.2698 1.0573 -7.2414 24 7 3.1817 0.7796 -8.3538 25 6 2.8354 0.2798 -9.5586 26 6 3.9617 0.1755 -10.3011 27 6 5.0345 0.6179 -9.5202 28 7 4.5681 0.9803 -8.3527 29 1 -0.3634 0.5126 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1313 1.4411 -0.0005 33 1 1.6772 1.9567 -0.8891 34 1 1.6796 1.9558 0.8908 35 1 1.6007 -0.2731 2.1390 36 1 3.1275 -0.6463 1.2981 37 1 0.1512 -5.6969 3.1651 38 1 3.1033 -3.0022 -0.0820 39 1 1.5636 -3.8947 0.0175 40 1 0.4133 -2.1355 -1.2541 41 1 1.8476 -2.6626 -2.1673 42 1 0.7810 0.5328 -2.4076 43 1 0.7939 0.2691 -5.0895 44 1 1.7802 1.6787 -4.6329 45 1 3.7527 0.6537 -5.7322 46 1 2.7659 -0.7557 -6.1885 47 1 1.2662 0.7202 -7.5011 48 1 2.2534 2.1292 -7.0444 49 1 1.8376 0.0131 -9.8743 50 1 4.0224 -0.1891 -11.3159 51 1 6.0692 0.6544 -9.8279 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281566708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:42 Heat of formation + Delta-G solvation = 58.224805 kcal Electronic energy + Delta-G solvation = -29286.155203 eV Core-core repulsion = 25415.778042 eV Total energy + Delta-G solvation = -3870.377160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.36622 -40.22407 -38.46623 -35.47832 -34.81463 -33.21284 -32.03699 -31.65690 -30.39193 -30.06040 -27.32755 -26.99334 -26.37236 -24.90606 -23.04175 -21.99984 -21.35889 -21.22309 -20.72397 -20.17313 -18.49344 -17.62927 -16.91363 -16.64333 -16.25435 -15.97965 -15.23941 -14.94399 -14.64461 -14.43034 -14.35841 -14.06584 -13.92953 -13.81548 -13.50166 -13.28708 -13.05828 -12.82660 -12.58012 -12.37156 -12.29693 -12.05526 -12.01007 -11.80531 -11.67793 -11.33309 -11.26841 -11.24406 -10.84673 -10.83363 -10.56355 -10.41852 -10.13493 -9.99232 -9.88254 -9.71232 -9.60528 -9.48163 -8.87351 -8.78305 -8.59961 -7.01547 -5.95812 -3.28709 1.63525 2.21506 2.60268 2.69052 3.24282 3.34743 3.51038 3.54540 4.13476 4.45567 4.48265 4.53713 4.59961 4.76541 4.86231 4.87765 4.91500 4.96896 5.05592 5.19725 5.22466 5.24133 5.30564 5.40587 5.47942 5.68812 5.69572 5.70499 5.74416 5.80767 5.87117 5.97281 5.98100 6.07503 6.15844 6.23727 6.29288 6.37832 6.38523 6.43373 6.59175 6.61397 6.66516 6.72808 6.74282 6.76574 6.98260 7.44696 7.60609 7.92540 8.30736 8.31188 8.92391 9.71778 10.08432 11.19736 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.002320 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.194696 B =12065.424744 C =12902.991252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 C -0.136 4.136 4 C 0.162 3.838 5 N -0.603 5.603 6 C -0.257 4.257 7 H 0.087 0.913 8 C 0.023 3.977 9 N -0.906 5.906 10 Si 0.878 3.122 11 H -0.290 1.290 12 H -0.270 1.270 13 H -0.304 1.304 14 C 0.129 3.871 15 C -0.143 4.143 16 C 0.163 3.837 17 H 0.081 0.919 18 N -0.721 5.721 19 C 0.509 3.491 20 O -0.539 6.539 21 C -0.139 4.139 22 C -0.115 4.115 23 C 0.133 3.867 24 N -0.371 5.371 25 C 0.051 3.949 26 C -0.278 4.278 27 C 0.041 3.959 28 N -0.291 5.291 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.396 0.604 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.173 0.827 50 H 0.146 0.854 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 15.174 -22.606 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.194 4.194 4 C 0.035 3.965 5 N -0.326 5.326 6 C -0.385 4.385 7 H 0.104 0.896 8 C -0.176 4.176 9 N -0.549 5.549 10 Si 0.708 3.292 11 H -0.218 1.218 12 H -0.195 1.195 13 H -0.232 1.232 14 C 0.003 3.997 15 C -0.184 4.184 16 C 0.059 3.941 17 H 0.099 0.901 18 N -0.373 5.373 19 C 0.295 3.705 20 O -0.416 6.416 21 C -0.180 4.180 22 C -0.154 4.154 23 C 0.012 3.988 24 N -0.153 5.153 25 C -0.095 4.095 26 C -0.307 4.307 27 C -0.145 4.145 28 N -0.112 5.112 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.231 0.769 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.115 0.885 48 H 0.104 0.896 49 H 0.190 0.810 50 H 0.164 0.836 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.693 15.025 -21.254 26.084 hybrid contribution 0.108 -0.817 -1.212 1.466 sum 1.801 14.208 -22.466 26.643 Atomic orbital electron populations 1.21798 0.94014 1.03323 0.99791 1.21345 0.96788 0.94760 0.96315 1.21798 1.00833 0.95617 1.01155 1.20943 0.96388 0.84843 0.94329 1.44377 1.65618 1.06485 1.16078 1.18888 1.20617 0.91407 1.07619 0.89553 1.25212 0.97791 0.96553 0.98047 1.69857 1.31430 1.08705 1.44929 0.87031 0.85658 0.79533 0.76964 1.21774 1.19462 1.23208 1.21378 0.97123 0.95627 0.85576 1.22521 1.01560 0.95069 0.99202 1.20946 0.99253 0.91348 0.82546 0.90072 1.46296 1.29756 1.50752 1.10469 1.20485 0.83788 0.81681 0.84587 1.90734 1.25673 1.40474 1.84754 1.21586 1.00923 1.01909 0.93573 1.21574 1.00600 1.01675 0.91538 1.21787 0.90783 1.01484 0.84783 1.48755 1.05945 1.49236 1.11355 1.22594 1.00696 0.99680 0.86523 1.21521 0.91830 1.14723 1.02635 1.23922 1.00381 0.98922 0.91309 1.77398 0.88454 1.23843 1.21547 0.92830 0.94613 0.90445 0.92943 0.93280 0.92504 0.91398 0.95804 0.92821 0.95489 0.90786 0.91189 0.92552 0.76882 0.88762 0.88702 0.89524 0.90525 0.88543 0.89627 0.81030 0.83638 0.80125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 7.83 37.16 0.29 -1.62 16 2 C -0.09 -1.34 0.56 -154.39 -0.09 -1.43 16 3 C -0.14 -1.65 8.31 37.16 0.31 -1.34 16 4 C 0.16 3.05 5.19 -3.71 -0.02 3.03 16 5 N -0.60 -13.84 2.23 -172.05 -0.38 -14.22 16 6 C -0.26 -6.97 10.05 -15.06 -0.15 -7.12 16 7 H 0.09 2.48 8.04 -52.49 -0.42 2.06 16 8 C 0.02 0.65 5.21 -17.43 -0.09 0.56 16 9 N -0.91 -27.49 13.97 55.49 0.78 -26.71 16 10 Si 0.88 22.60 24.36 -169.99 -4.14 18.46 16 11 H -0.29 -7.30 6.68 56.52 0.38 -6.93 16 12 H -0.27 -6.88 6.54 56.52 0.37 -6.51 16 13 H -0.30 -7.98 7.11 56.52 0.40 -7.57 16 14 C 0.13 2.86 4.23 -3.49 -0.01 2.84 16 15 C -0.14 -2.62 5.32 -26.38 -0.14 -2.76 16 16 C 0.16 2.56 1.57 -67.89 -0.11 2.45 16 17 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 18 N -0.72 -8.79 4.29 -53.77 -0.23 -9.02 16 19 C 0.51 6.51 7.79 -10.99 -0.09 6.42 16 20 O -0.54 -9.50 15.65 5.56 0.09 -9.41 16 21 C -0.14 -1.08 5.70 -27.88 -0.16 -1.24 16 22 C -0.12 -1.07 4.69 -26.73 -0.13 -1.19 16 23 C 0.13 0.90 6.51 -4.04 -0.03 0.87 16 24 N -0.37 -3.52 3.68 -61.37 -0.23 -3.75 16 25 C 0.05 0.40 11.45 -17.22 -0.20 0.20 16 26 C -0.28 -2.26 10.80 -40.01 -0.43 -2.69 16 27 C 0.04 0.39 12.03 -17.36 -0.21 0.18 16 28 N -0.29 -3.44 12.42 30.63 0.38 -3.06 16 29 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.03 0.40 6.58 -51.93 -0.34 0.06 16 31 H 0.08 1.37 5.97 -51.93 -0.31 1.06 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.51 7.36 -51.93 -0.38 0.13 16 34 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.07 1.27 7.92 -51.93 -0.41 0.86 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 38 H 0.03 0.62 7.08 -51.93 -0.37 0.25 16 39 H 0.07 1.80 4.36 -51.93 -0.23 1.57 16 40 H 0.07 1.27 6.33 -51.93 -0.33 0.94 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.40 3.75 6.66 -40.82 -0.27 3.48 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 46 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 47 H 0.10 0.37 8.07 -51.93 -0.42 -0.05 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 50 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 51 H 0.18 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -35.07 393.96 -7.61 -42.67 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.56 Total: 1.93 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -1.24 Total: -2.83 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.32 Total: -56.76 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.14 Total: 18.46 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.07 -7.61 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281566708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.898 kcal (2) G-P(sol) polarization free energy of solvation -35.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds