Wall clock time and date at job start Tue Mar 31 2020 18:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.52326 * 2 1 4 4 C 1.53194 * 109.49858 * 120.08028 * 2 1 3 5 5 N 1.46926 * 108.77186 * 65.31693 * 4 2 1 6 6 C 1.36939 * 120.62747 * 233.58348 * 5 4 2 7 7 H 1.07998 * 120.00237 * 25.19938 * 6 5 4 8 8 C 1.38816 * 119.99817 * 205.19661 * 6 5 4 9 9 N 1.31618 * 119.99601 * 202.60034 * 8 6 5 10 10 Si 1.86796 * 119.99958 * 22.59623 * 8 6 5 11 11 H 1.48501 * 109.47089 * 264.61711 * 10 8 6 12 12 H 1.48504 * 109.47355 * 24.61546 * 10 8 6 13 13 H 1.48503 * 109.47120 * 144.61863 * 10 8 6 14 14 C 1.46924 * 118.73892 * 53.86166 * 5 4 2 15 15 C 1.53620 * 108.54439 * 306.09098 * 14 5 4 16 16 C 1.53032 * 109.50154 * 239.92133 * 2 1 3 17 17 H 1.08992 * 109.46606 * 181.40819 * 16 2 1 18 18 N 1.46505 * 109.46181 * 61.42843 * 16 2 1 19 19 C 1.34772 * 119.99958 * 154.99754 * 18 16 2 20 20 O 1.21281 * 120.00303 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00116 * 180.02562 * 19 18 16 22 22 C 1.52999 * 109.47556 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.47258 * 180.02562 * 22 21 19 24 24 N 1.46500 * 109.47082 * 179.97438 * 23 22 21 25 25 C 1.34955 * 126.03684 * 124.71431 * 24 23 22 26 26 C 1.35309 * 107.74556 * 179.84201 * 25 24 23 27 27 C 1.39871 * 107.92070 * 0.42228 * 26 25 24 28 28 N 1.30840 * 108.20443 * 359.73905 * 27 26 25 29 29 H 1.09008 * 109.47121 * 299.92105 * 1 2 3 30 30 H 1.08998 * 109.47413 * 59.91750 * 1 2 3 31 31 H 1.08997 * 109.47416 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47002 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47275 * 300.08528 * 3 2 1 34 34 H 1.09010 * 109.46894 * 60.08296 * 3 2 1 35 35 H 1.09006 * 109.58756 * 305.53014 * 4 2 1 36 36 H 1.09000 * 109.58812 * 185.10555 * 4 2 1 37 37 H 0.97006 * 119.99675 * 179.97438 * 9 8 6 38 38 H 1.09001 * 109.58551 * 65.92916 * 14 5 4 39 39 H 1.08996 * 109.58461 * 186.34766 * 14 5 4 40 40 H 1.08993 * 109.63318 * 294.86530 * 15 14 5 41 41 H 1.08997 * 109.45818 * 174.74065 * 15 14 5 42 42 H 0.96997 * 119.99700 * 335.00733 * 18 16 2 43 43 H 1.09002 * 109.47358 * 300.00918 * 21 19 18 44 44 H 1.09006 * 109.46600 * 60.00376 * 21 19 18 45 45 H 1.09003 * 109.46409 * 300.00254 * 22 21 19 46 46 H 1.08999 * 109.47123 * 60.00069 * 22 21 19 47 47 H 1.09002 * 109.47176 * 299.99856 * 23 22 21 48 48 H 1.08999 * 109.47329 * 59.99789 * 23 22 21 49 49 H 1.07999 * 126.12322 * 359.97438 * 25 24 23 50 50 H 1.07998 * 126.04373 * 180.16450 * 26 25 24 51 51 H 1.08006 * 125.89948 * 179.75976 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6515 -2.1381 1.1695 6 6 0.9639 -2.7314 2.1945 7 1 0.3578 -2.1312 2.8568 8 6 1.0460 -4.1044 2.3821 9 7 0.0940 -4.7374 3.0343 10 14 2.5074 -5.0533 1.7090 11 1 2.1602 -5.6208 0.3813 12 1 3.6690 -4.1389 1.5679 13 1 2.8549 -6.1547 2.6425 14 6 2.0189 -2.9054 -0.0284 15 6 1.5030 -2.1557 -1.2660 16 6 2.0409 -0.7230 -1.2483 17 1 3.1305 -0.7445 -1.2351 18 7 1.5811 -0.0144 -2.4453 19 6 2.2698 -0.1226 -3.5987 20 8 3.2700 -0.8070 -3.6458 21 6 1.7972 0.6068 -4.8298 22 6 2.7493 0.3163 -5.9917 23 6 2.2698 1.0573 -7.2414 24 7 3.1817 0.7796 -8.3538 25 6 2.8354 0.2798 -9.5586 26 6 3.9617 0.1755 -10.3011 27 6 5.0345 0.6179 -9.5202 28 7 4.5681 0.9803 -8.3527 29 1 -0.3634 0.5126 0.8908 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1313 1.4411 -0.0005 33 1 1.6772 1.9567 -0.8891 34 1 1.6796 1.9558 0.8908 35 1 1.6007 -0.2731 2.1390 36 1 3.1275 -0.6463 1.2981 37 1 0.1512 -5.6969 3.1651 38 1 3.1033 -3.0022 -0.0820 39 1 1.5636 -3.8947 0.0175 40 1 0.4133 -2.1355 -1.2541 41 1 1.8476 -2.6626 -2.1673 42 1 0.7810 0.5328 -2.4076 43 1 0.7939 0.2691 -5.0895 44 1 1.7802 1.6787 -4.6329 45 1 3.7527 0.6537 -5.7322 46 1 2.7659 -0.7557 -6.1885 47 1 1.2662 0.7202 -7.5011 48 1 2.2534 2.1292 -7.0444 49 1 1.8376 0.0131 -9.8743 50 1 4.0224 -0.1891 -11.3159 51 1 6.0692 0.6544 -9.8279 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281566708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:41 Heat of formation + Delta-G solvation = 34.243169 kcal Electronic energy + Delta-G solvation = -29287.195124 eV Core-core repulsion = 25415.778042 eV Total energy + Delta-G solvation = -3871.417082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.97320 -41.42354 -39.75648 -36.56116 -36.03871 -34.51721 -33.66577 -32.74828 -31.74526 -30.84409 -28.22259 -28.07819 -27.88425 -26.39064 -24.19926 -23.19309 -22.95194 -21.94044 -21.38507 -21.18490 -19.71892 -18.86172 -18.35525 -17.61610 -17.51084 -16.95150 -16.62780 -16.03646 -16.00650 -15.58433 -15.46759 -15.33418 -15.03585 -14.95953 -14.57366 -14.35005 -14.33263 -14.01069 -13.91669 -13.60799 -13.35662 -13.15939 -13.03524 -12.88979 -12.71241 -12.70412 -12.63787 -12.46871 -12.19984 -12.02337 -11.91122 -11.86612 -11.57150 -11.47210 -11.40931 -11.24632 -10.90584 -10.68659 -10.34976 -9.97467 -9.47598 -8.98571 -8.18164 -5.45314 1.03395 1.25163 1.36886 1.44345 1.68880 1.71418 1.98495 2.25893 2.38126 3.01405 3.30993 3.57319 3.63734 3.75364 3.84947 3.92600 4.00449 4.11528 4.16952 4.21696 4.31157 4.32927 4.39211 4.46426 4.47870 4.54127 4.66542 4.73278 4.75100 4.77865 4.86801 4.89007 4.91340 4.92653 5.00232 5.05893 5.09843 5.16739 5.18001 5.22143 5.26055 5.28151 5.41669 5.56603 5.67764 5.78166 5.84408 6.11573 6.22572 6.65045 6.81428 6.88066 7.35773 7.60633 8.01791 9.01139 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.002320 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.194696 B =12065.424744 C =12902.991252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.079 4.079 3 C -0.129 4.129 4 C 0.153 3.847 5 N -0.612 5.612 6 C -0.234 4.234 7 H 0.065 0.935 8 C -0.031 4.031 9 N -0.950 5.950 10 Si 0.931 3.069 11 H -0.285 1.285 12 H -0.269 1.269 13 H -0.311 1.311 14 C 0.126 3.874 15 C -0.132 4.132 16 C 0.173 3.827 17 H 0.057 0.943 18 N -0.707 5.707 19 C 0.503 3.497 20 O -0.595 6.595 21 C -0.125 4.125 22 C -0.107 4.107 23 C 0.132 3.868 24 N -0.381 5.381 25 C 0.054 3.946 26 C -0.293 4.293 27 C 0.027 3.973 28 N -0.344 5.344 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.019 0.981 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.415 0.585 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.136 0.864 48 H 0.100 0.900 49 H 0.211 0.789 50 H 0.165 0.835 51 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 17.925 -25.302 31.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.081 4.081 3 C -0.187 4.187 4 C 0.028 3.972 5 N -0.335 5.335 6 C -0.363 4.363 7 H 0.082 0.918 8 C -0.226 4.226 9 N -0.597 5.597 10 Si 0.761 3.239 11 H -0.212 1.212 12 H -0.194 1.194 13 H -0.240 1.240 14 C 0.000 4.000 15 C -0.172 4.172 16 C 0.068 3.932 17 H 0.075 0.925 18 N -0.359 5.359 19 C 0.292 3.708 20 O -0.475 6.475 21 C -0.165 4.165 22 C -0.146 4.146 23 C 0.012 3.988 24 N -0.163 5.163 25 C -0.092 4.092 26 C -0.322 4.322 27 C -0.158 4.158 28 N -0.167 5.167 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.254 0.746 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.154 0.846 48 H 0.118 0.882 49 H 0.227 0.773 50 H 0.183 0.817 51 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.260 17.842 -23.984 29.894 hybrid contribution 0.561 -1.615 -0.393 1.754 sum 0.821 16.227 -24.377 29.296 Atomic orbital electron populations 1.21738 0.93137 1.01637 1.01922 1.21184 0.97277 0.96041 0.93580 1.21750 1.00539 0.93291 1.03139 1.21192 0.96516 0.82753 0.96726 1.44458 1.65523 1.08115 1.15442 1.18872 1.19103 0.91061 1.07289 0.91770 1.25702 0.99679 0.97689 0.99540 1.69952 1.33119 1.08823 1.47789 0.86157 0.83094 0.78223 0.76378 1.21228 1.19366 1.23953 1.21320 0.96451 0.95158 0.87083 1.22345 1.01616 0.96485 0.96731 1.20554 0.97778 0.90317 0.84578 0.92473 1.46039 1.30334 1.50332 1.09227 1.21446 0.82751 0.80889 0.85727 1.90728 1.28222 1.42959 1.85593 1.21609 1.01762 1.03229 0.89879 1.21417 0.99395 1.00120 0.93690 1.22008 0.91769 1.02085 0.82985 1.49012 1.05439 1.49369 1.12528 1.23269 1.02238 0.98068 0.85671 1.21889 0.91661 1.14965 1.03659 1.24369 1.01739 0.98522 0.91166 1.77321 0.90368 1.25989 1.22982 0.92669 0.90578 0.93973 0.93466 0.90467 0.91371 0.91478 0.95814 0.93083 0.96312 0.93229 0.90755 0.92942 0.74641 0.84978 0.85178 0.93274 0.93343 0.84611 0.88160 0.77262 0.81711 0.78650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 7.83 71.98 0.56 -2.75 16 2 C -0.08 -2.18 0.56 -52.11 -0.03 -2.21 16 3 C -0.13 -2.67 8.31 71.98 0.60 -2.07 16 4 C 0.15 5.69 5.19 86.36 0.45 6.13 16 5 N -0.61 -28.35 2.23 -698.26 -1.56 -29.90 16 6 C -0.23 -12.94 10.05 84.03 0.84 -12.10 16 7 H 0.06 3.80 8.04 -2.91 -0.02 3.78 16 8 C -0.03 -1.83 5.21 84.86 0.44 -1.39 16 9 N -0.95 -59.45 13.97 21.65 0.30 -59.14 16 10 Si 0.93 48.25 24.36 68.60 1.67 49.92 16 11 H -0.28 -14.34 6.68 99.48 0.66 -13.67 16 12 H -0.27 -13.67 6.54 99.48 0.65 -13.02 16 13 H -0.31 -16.30 7.11 99.48 0.71 -15.59 16 14 C 0.13 5.63 4.23 86.51 0.37 6.00 16 15 C -0.13 -4.74 5.32 30.82 0.16 -4.57 16 16 C 0.17 5.17 1.57 45.02 0.07 5.24 16 17 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 18 N -0.71 -14.86 4.29 -442.41 -1.90 -16.76 16 19 C 0.50 11.65 7.79 87.66 0.68 12.33 16 20 O -0.59 -20.84 15.65 -3.03 -0.05 -20.88 16 21 C -0.12 -1.42 5.70 29.85 0.17 -1.25 16 22 C -0.11 -1.80 4.69 30.59 0.14 -1.66 16 23 C 0.13 1.35 6.51 86.38 0.56 1.91 16 24 N -0.38 -6.55 3.68 -348.07 -1.28 -7.83 16 25 C 0.05 0.69 11.45 83.54 0.96 1.65 16 26 C -0.29 -4.31 10.80 21.99 0.24 -4.07 16 27 C 0.03 0.51 12.03 85.24 1.02 1.54 16 28 N -0.34 -8.12 12.42 -57.02 -0.71 -8.82 16 29 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.08 1.35 6.58 -2.39 -0.02 1.34 16 31 H 0.04 1.42 5.97 -2.39 -0.01 1.40 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.19 7.36 -2.39 -0.02 1.17 16 34 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.07 2.47 7.92 -2.38 -0.02 2.45 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 38 H 0.02 0.87 7.08 -2.39 -0.02 0.86 16 39 H 0.05 2.46 4.36 -2.39 -0.01 2.45 16 40 H 0.07 2.62 6.33 -2.39 -0.02 2.60 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.42 5.65 6.66 -92.71 -0.62 5.04 16 43 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 46 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 47 H 0.14 0.31 8.07 -2.39 -0.02 0.29 16 48 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 50 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 51 H 0.20 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -83.04 393.96 3.93 -79.11 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.20 Total: 11.59 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 7.25 Total: 2.73 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -5.14 Total: -122.46 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.67 Total: 49.92 kcal Total: -83.04 3.93 -79.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281566708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.352 kcal (2) G-P(sol) polarization free energy of solvation -83.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds