Wall clock time and date at job start Tue Mar 31 2020 17:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39872 * 125.89962 * 2 1 4 4 C 1.35313 * 107.92534 * 179.97438 * 3 2 1 5 5 N 1.34949 * 107.74328 * 0.02562 * 4 3 2 6 6 C 1.46500 * 126.03917 * 179.97438 * 5 4 3 7 7 H 1.08993 * 109.47215 * 204.99615 * 6 5 4 8 8 C 1.53004 * 109.46835 * 325.00050 * 6 5 4 9 9 C 1.53003 * 109.47097 * 84.99327 * 6 5 4 10 10 C 1.50700 * 109.47115 * 175.00089 * 9 6 5 11 11 O 1.21282 * 119.99898 * 0.02562 * 10 9 6 12 12 N 1.34776 * 119.99866 * 180.02562 * 10 9 6 13 13 C 1.46500 * 119.99624 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46996 * 175.58853 * 13 12 10 15 15 N 1.46497 * 110.06107 * 56.32563 * 14 13 12 16 16 C 1.36942 * 119.99779 * 57.74635 * 15 14 13 17 17 H 1.07998 * 119.99389 * 6.23711 * 16 15 14 18 18 C 1.38808 * 119.99883 * 186.23308 * 16 15 14 19 19 N 1.31623 * 119.99912 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99886 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47000 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.46988 * 120.00118 * 20 18 16 23 23 H 1.48501 * 109.47119 * 240.00122 * 20 18 16 24 24 C 1.53885 * 110.02885 * 294.90825 * 14 13 12 25 25 C 1.54262 * 106.59792 * 240.71767 * 24 14 13 26 26 C 1.54889 * 104.20010 * 336.38876 * 25 24 14 27 27 C 1.54264 * 110.03559 * 177.74656 * 14 13 12 28 28 N 1.30844 * 125.90215 * 180.30183 * 2 1 3 29 29 H 1.09001 * 109.47295 * 90.00226 * 1 2 3 30 30 H 1.08997 * 109.47231 * 210.00059 * 1 2 3 31 31 H 1.08999 * 109.47184 * 330.00043 * 1 2 3 32 32 H 1.08004 * 126.03967 * 359.97438 * 3 2 1 33 33 H 1.07995 * 126.13449 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.46868 * 299.99449 * 8 6 5 35 35 H 1.08993 * 109.47575 * 59.99785 * 8 6 5 36 36 H 1.09000 * 109.46848 * 179.97438 * 8 6 5 37 37 H 1.08997 * 109.46716 * 55.00785 * 9 6 5 38 38 H 1.09000 * 109.47488 * 295.00482 * 9 6 5 39 39 H 0.96998 * 120.00024 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.47807 * 55.58424 * 13 12 10 41 41 H 1.09000 * 109.47251 * 295.58101 * 13 12 10 42 42 H 0.96997 * 120.00087 * 237.75288 * 15 14 13 43 43 H 0.97000 * 119.99408 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.02985 * 0.02562 * 24 14 13 45 45 H 1.09003 * 110.02801 * 121.43539 * 24 14 13 46 46 H 1.08992 * 110.48801 * 95.07357 * 25 24 14 47 47 H 1.09008 * 110.48303 * 217.71652 * 25 24 14 48 48 H 1.09006 * 110.75842 * 279.63316 * 26 25 24 49 49 H 1.08999 * 110.75812 * 156.25765 * 26 25 24 50 50 H 1.08998 * 110.48711 * 261.57420 * 27 14 13 51 51 H 1.09006 * 110.48522 * 24.21356 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7155 0.0006 5 7 3.6087 -0.6340 0.0004 6 6 4.7899 -1.5007 0.0003 7 1 4.5319 -2.4665 -0.4341 8 6 5.9001 -0.8495 -0.8270 9 6 5.2755 -1.7012 1.4373 10 6 6.4135 -2.6890 1.4498 11 8 6.7986 -3.1836 0.4115 12 7 7.0033 -3.0228 2.6148 13 6 8.1100 -3.9827 2.6268 14 6 8.6671 -4.1009 4.0469 15 7 7.5990 -4.4783 4.9758 16 6 6.8890 -5.6312 4.7709 17 1 7.1807 -6.3125 3.9852 18 6 5.7946 -5.9242 5.5729 19 7 5.4391 -5.0936 6.5301 20 14 4.8266 -7.4972 5.2938 21 1 5.4261 -8.2538 4.1653 22 1 4.8675 -8.3284 6.5236 23 1 3.4168 -7.1601 4.9708 24 6 9.2944 -2.7641 4.4799 25 6 10.7832 -3.0485 4.7667 26 6 10.8265 -4.5641 5.0829 27 6 9.7967 -5.1508 4.0857 28 7 2.2742 -1.0598 -0.0056 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.9922 2.1599 -0.0004 33 1 4.4891 1.3486 0.0011 34 1 5.5542 -0.7067 -1.8507 35 1 6.1582 0.1162 -0.3926 36 1 6.7791 -1.4942 -0.8267 37 1 4.4568 -2.0824 2.0475 38 1 5.6169 -0.7483 1.8417 39 1 6.6955 -2.6269 3.4451 40 1 8.8967 -3.6388 1.9553 41 1 7.7497 -4.9567 2.2957 42 1 7.3947 -3.9116 5.7360 43 1 4.6745 -5.2986 7.0907 44 1 9.2015 -2.0312 3.6785 45 1 8.8041 -2.3963 5.3813 46 1 11.3902 -2.8242 3.8897 47 1 11.1235 -2.4698 5.6256 48 1 10.5192 -4.7532 6.1115 49 1 11.8206 -4.9697 4.8949 50 1 9.4170 -6.1064 4.4473 51 1 10.2445 -5.2660 3.0986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753666731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:27 Heat of formation + Delta-G solvation = 35.657259 kcal Electronic energy + Delta-G solvation = -29449.400108 eV Core-core repulsion = 25578.044345 eV Total energy + Delta-G solvation = -3871.355763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29945 -39.65347 -38.31759 -35.58153 -34.13296 -33.35577 -31.79248 -30.74220 -29.99421 -28.85305 -28.29114 -27.40778 -27.21966 -24.50188 -23.34441 -22.69846 -20.70013 -20.22160 -19.80955 -19.63169 -18.61403 -17.45921 -17.02956 -16.34724 -15.76278 -15.71179 -15.17169 -14.82897 -14.69775 -14.37958 -14.08600 -13.94252 -13.68634 -13.44398 -13.36917 -13.16387 -12.91483 -12.78600 -12.63983 -12.48880 -12.18065 -12.10436 -11.66918 -11.51483 -11.43466 -11.20959 -11.14258 -10.82744 -10.77347 -10.67829 -10.56169 -10.53990 -10.29501 -10.18442 -9.90133 -9.70966 -9.57146 -9.23259 -8.95335 -8.58032 -8.49710 -7.06606 -5.85928 -3.15508 1.87983 2.39986 2.76254 2.92971 3.38965 3.47005 3.47388 3.69019 4.39025 4.52725 4.63312 4.71759 4.81289 4.97578 5.05932 5.07360 5.15506 5.18486 5.26591 5.35929 5.47024 5.51059 5.51539 5.59907 5.63769 5.68208 5.71555 5.75266 5.77849 5.88556 5.89649 5.90190 6.04411 6.05157 6.11131 6.12948 6.20805 6.26917 6.38838 6.51249 6.55227 6.66840 6.72403 6.76900 6.93984 7.02298 7.04764 7.66941 7.76063 7.96818 8.32876 8.58378 9.44867 9.98080 10.33333 11.35989 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.003252 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.098181 B = 8609.290197 C =10416.462899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.064 3.936 3 C -0.277 4.277 4 C 0.057 3.943 5 N -0.363 5.363 6 C 0.177 3.823 7 H 0.111 0.889 8 C -0.165 4.165 9 C -0.154 4.154 10 C 0.517 3.483 11 O -0.556 6.556 12 N -0.695 5.695 13 C 0.120 3.880 14 C 0.189 3.811 15 N -0.712 5.712 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.007 4.007 19 N -0.930 5.930 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.125 4.125 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.132 4.132 28 N -0.293 5.293 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.170 0.830 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.405 0.595 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.054 0.946 50 H 0.078 0.922 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 13.686 -10.071 17.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C -0.307 4.307 4 C -0.090 4.090 5 N -0.145 5.145 6 C 0.075 3.925 7 H 0.129 0.871 8 C -0.223 4.223 9 C -0.195 4.195 10 C 0.302 3.698 11 O -0.437 6.437 12 N -0.344 5.344 13 C -0.006 4.006 14 C 0.096 3.904 15 N -0.353 5.353 16 C -0.366 4.366 17 H 0.088 0.912 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.163 4.163 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.172 4.172 28 N -0.115 5.115 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.162 0.838 33 H 0.187 0.813 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.113 0.887 39 H 0.241 0.759 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.097 0.903 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.178 11.806 -10.839 16.175 hybrid contribution -0.863 0.364 0.719 1.181 sum 1.315 12.171 -10.120 15.883 Atomic orbital electron populations 1.20146 0.86930 1.03214 1.02678 1.22362 0.96919 0.90911 1.00031 1.21345 0.91682 0.99605 1.18045 1.22468 0.99472 0.85452 1.01562 1.48901 1.05122 1.04530 1.55932 1.20950 0.81438 0.94627 0.95461 0.87126 1.22311 0.99151 1.01500 0.99374 1.22046 0.98963 1.00591 0.97946 1.20065 0.83148 0.82511 0.84119 1.90636 1.65284 1.55671 1.32079 1.45764 1.35262 1.44482 1.08941 1.21881 0.87787 0.92403 0.98489 1.20468 0.89094 0.92062 0.88749 1.42580 1.37714 1.26480 1.28571 1.19125 1.06277 0.97495 1.13699 0.91195 1.24690 0.98546 0.98472 0.98619 1.69657 1.29125 1.36917 1.22120 0.86225 0.80138 0.83195 0.77305 1.20536 1.21904 1.21888 1.22422 0.95531 0.97217 1.01117 1.22304 0.96305 0.96901 1.00345 1.22387 0.98152 0.94751 1.00178 1.22832 0.95967 1.00587 0.97833 1.77381 0.86602 1.22887 1.24664 0.90803 0.90968 0.90606 0.83832 0.81260 0.91894 0.92286 0.87769 0.87900 0.88678 0.75906 0.92694 0.91725 0.78130 0.93571 0.92119 0.91340 0.92293 0.92365 0.91407 0.92705 0.90305 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.45 36.00 0.38 -0.28 16 2 C 0.06 0.82 7.22 -82.41 -0.59 0.23 16 3 C -0.28 -3.11 10.74 -40.01 -0.43 -3.54 16 4 C 0.06 0.63 10.59 -17.22 -0.18 0.45 16 5 N -0.36 -4.90 3.53 -54.86 -0.19 -5.09 16 6 C 0.18 2.32 3.05 -67.93 -0.21 2.11 16 7 H 0.11 1.67 7.95 -51.93 -0.41 1.26 16 8 C -0.17 -1.79 8.58 37.16 0.32 -1.47 16 9 C -0.15 -2.06 5.50 -27.88 -0.15 -2.21 16 10 C 0.52 8.32 7.55 -10.99 -0.08 8.23 16 11 O -0.56 -10.19 13.96 5.56 0.08 -10.12 16 12 N -0.70 -11.57 5.09 -60.29 -0.31 -11.88 16 13 C 0.12 2.12 3.98 -4.04 -0.02 2.10 16 14 C 0.19 3.28 0.68 -130.70 -0.09 3.19 16 15 N -0.71 -15.54 4.64 -46.20 -0.21 -15.75 16 16 C -0.23 -5.94 8.39 -15.06 -0.13 -6.07 16 17 H 0.07 1.79 7.23 -52.49 -0.38 1.41 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 19 N -0.93 -26.40 13.07 55.49 0.73 -25.68 16 20 Si 0.90 22.04 29.55 -169.99 -5.02 17.01 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 C -0.12 -1.83 5.92 -25.61 -0.15 -1.98 16 25 C -0.12 -1.58 6.83 -25.07 -0.17 -1.75 16 26 C -0.12 -1.70 6.91 -24.74 -0.17 -1.87 16 27 C -0.13 -2.20 5.95 -25.07 -0.15 -2.35 16 28 N -0.29 -4.53 12.58 33.67 0.42 -4.10 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 33 H 0.17 1.31 7.26 -52.49 -0.38 0.93 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.52 7.16 -51.93 -0.37 0.14 16 36 H 0.10 1.30 5.95 -51.93 -0.31 0.99 16 37 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.41 6.74 8.00 -40.82 -0.33 6.41 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.32 7.46 -51.93 -0.39 0.93 16 42 H 0.38 9.03 7.28 -40.82 -0.30 8.73 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.06 0.82 7.54 -51.93 -0.39 0.43 16 45 H 0.07 1.05 7.44 -51.93 -0.39 0.67 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 48 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 1.51 7.16 -51.93 -0.37 1.14 16 51 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 LS Contribution 405.78 15.07 6.12 6.12 Total: -1.00 -30.57 405.78 -8.95 -39.52 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -8.63 Total: 15.46 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.93 Total: -5.50 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: 0.43 Total: -62.49 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.12 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.57 -8.95 -39.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753666731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.181 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds