Wall clock time and date at job start Tue Mar 31 2020 17:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39866 * 125.89814 * 2 1 4 4 C 1.35319 * 107.91812 * 179.72071 * 3 2 1 5 5 N 1.34946 * 107.74796 * 0.41696 * 4 3 2 6 6 C 1.46497 * 126.03935 * 179.84147 * 5 4 3 7 7 H 1.09007 * 109.47297 * 154.72371 * 6 5 4 8 8 C 1.52996 * 109.47312 * 34.72029 * 6 5 4 9 9 C 1.52997 * 109.47084 * 274.71913 * 6 5 4 10 10 C 1.50709 * 109.47221 * 185.00006 * 9 6 5 11 11 O 1.21279 * 119.99860 * 0.02562 * 10 9 6 12 12 N 1.34778 * 120.00093 * 179.97438 * 10 9 6 13 13 C 1.46494 * 119.99839 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47070 * 184.52405 * 13 12 10 15 15 N 1.46501 * 110.53950 * 301.86790 * 14 13 12 16 16 C 1.36931 * 119.99924 * 301.04148 * 15 14 13 17 17 H 1.08001 * 120.00200 * 354.68997 * 16 15 14 18 18 C 1.38814 * 119.99751 * 174.69293 * 16 15 14 19 19 N 1.31615 * 120.00181 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47299 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46789 * 119.99760 * 20 18 16 23 23 H 1.48501 * 109.47324 * 239.99913 * 20 18 16 24 24 C 1.54889 * 110.48669 * 64.48257 * 14 13 12 25 25 C 1.54887 * 102.75114 * 156.61985 * 24 14 13 26 26 C 1.54272 * 104.19493 * 322.05917 * 25 24 14 27 27 C 1.53874 * 106.59867 * 23.60605 * 26 25 24 28 28 N 1.30842 * 125.89825 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47441 * 270.00342 * 1 2 3 30 30 H 1.09006 * 109.47366 * 30.00214 * 1 2 3 31 31 H 1.09008 * 109.47359 * 150.00196 * 1 2 3 32 32 H 1.08000 * 126.04167 * 359.97438 * 3 2 1 33 33 H 1.08001 * 126.12716 * 180.26649 * 4 3 2 34 34 H 1.08998 * 109.47005 * 300.00387 * 8 6 5 35 35 H 1.09005 * 109.46741 * 59.99678 * 8 6 5 36 36 H 1.09001 * 109.47743 * 179.97438 * 8 6 5 37 37 H 1.08995 * 109.47596 * 64.99989 * 9 6 5 38 38 H 1.09004 * 109.47298 * 304.99718 * 9 6 5 39 39 H 0.97001 * 119.99943 * 0.02562 * 12 10 9 40 40 H 1.08997 * 109.47286 * 64.51903 * 13 12 10 41 41 H 1.09000 * 109.47211 * 304.52323 * 13 12 10 42 42 H 0.96997 * 119.99547 * 121.03406 * 15 14 13 43 43 H 0.97000 * 119.99873 * 179.97438 * 19 18 16 44 44 H 1.09003 * 110.75829 * 274.93645 * 24 14 13 45 45 H 1.09001 * 110.75662 * 38.30851 * 24 14 13 46 46 H 1.09001 * 110.48500 * 80.73417 * 25 24 14 47 47 H 1.08996 * 110.48998 * 203.37635 * 25 24 14 48 48 H 1.09001 * 110.02908 * 264.32585 * 26 25 24 49 49 H 1.09000 * 110.03354 * 142.89481 * 26 25 24 50 50 H 1.08998 * 110.03322 * 240.71575 * 27 26 25 51 51 H 1.09003 * 110.02982 * 119.28344 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0063 5 7 3.6087 -0.6341 0.0008 6 6 4.7899 -1.5008 0.0013 7 1 4.5316 -2.4668 0.4353 8 6 5.8996 -0.8500 0.8293 9 6 5.2762 -1.7010 -1.4355 10 6 6.4142 -2.6889 -1.4476 11 8 6.7982 -3.1844 -0.4094 12 7 7.0046 -3.0225 -2.6124 13 6 8.1113 -3.9823 -2.6240 14 6 8.6709 -4.0982 -4.0433 15 7 7.6219 -4.5155 -4.9770 16 6 6.9631 -5.6999 -4.7817 17 1 7.2737 -6.3666 -3.9909 18 6 5.8960 -6.0436 -5.6003 19 7 5.5172 -5.2309 -6.5637 20 14 4.9977 -7.6597 -5.3344 21 1 5.6132 -8.3866 -4.1952 22 1 3.5689 -7.3882 -5.0336 23 1 5.0962 -8.4888 -6.5625 24 6 9.2925 -2.7525 -4.4924 25 6 10.2931 -3.1880 -5.5916 26 6 10.8827 -4.5121 -5.0633 27 6 9.8514 -5.0907 -4.0788 28 7 2.2742 -1.0599 0.0005 29 1 -0.3634 0.0001 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.9923 2.1598 -0.0004 33 1 4.4891 1.3485 0.0120 34 1 6.1579 0.1159 0.3953 35 1 5.5531 -0.7074 1.8529 36 1 6.7783 -1.4950 0.8301 37 1 5.6179 -0.7481 -1.8395 38 1 4.4578 -2.0821 -2.0463 39 1 6.6973 -2.6264 -3.4428 40 1 7.7505 -4.9568 -2.2950 41 1 8.8968 -3.6394 -1.9506 42 1 7.3941 -3.9526 -5.7334 43 1 4.7717 -5.4713 -7.1359 44 1 8.5290 -2.0927 -4.9046 45 1 9.8136 -2.2721 -3.6643 46 1 9.7745 -3.3515 -6.5364 47 1 11.0781 -2.4413 -5.7105 48 1 11.8246 -4.3222 -4.5485 49 1 11.0412 -5.2060 -5.8888 50 1 10.2927 -5.1817 -3.0863 51 1 9.5093 -6.0655 -4.4266 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753666732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:30 Heat of formation + Delta-G solvation = 34.092487 kcal Electronic energy + Delta-G solvation = -29411.160758 eV Core-core repulsion = 25539.737141 eV Total energy + Delta-G solvation = -3871.423616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.30874 -39.64269 -38.30050 -35.59712 -34.12227 -33.31810 -31.80239 -30.68526 -30.00265 -28.87293 -28.33001 -27.46294 -27.27210 -24.39572 -23.43718 -22.73576 -20.63719 -20.14373 -19.79870 -19.62296 -18.66357 -17.47114 -17.12053 -16.29031 -15.83598 -15.64355 -15.15796 -14.85748 -14.59680 -14.35685 -14.09706 -13.99447 -13.73209 -13.45681 -13.38086 -13.25029 -12.85529 -12.80606 -12.56731 -12.52280 -12.23438 -12.12241 -11.67659 -11.48124 -11.40004 -11.22013 -11.12550 -10.86269 -10.81906 -10.65448 -10.57661 -10.56796 -10.37140 -10.01001 -9.83729 -9.70575 -9.57635 -9.24168 -8.96183 -8.58885 -8.51221 -7.06512 -5.85440 -3.14689 1.87097 2.38991 2.75437 2.91522 3.39134 3.47078 3.47499 3.67280 4.38034 4.52671 4.62059 4.70932 4.80346 4.97458 5.06690 5.08899 5.15455 5.18437 5.25487 5.34865 5.45928 5.50356 5.50720 5.59137 5.61627 5.67392 5.73106 5.74386 5.77105 5.87692 5.88250 5.97205 6.04329 6.06670 6.10343 6.14505 6.21913 6.29263 6.40910 6.52211 6.61185 6.66002 6.70529 6.77034 6.93432 7.02107 7.04784 7.66640 7.75195 7.94559 8.33050 8.56545 9.45358 9.98661 10.34186 11.36566 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003168 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.809397 B = 8835.537005 C =10504.998374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.064 3.936 3 C -0.277 4.277 4 C 0.057 3.943 5 N -0.363 5.363 6 C 0.177 3.823 7 H 0.111 0.889 8 C -0.165 4.165 9 C -0.154 4.154 10 C 0.517 3.483 11 O -0.556 6.556 12 N -0.696 5.696 13 C 0.120 3.880 14 C 0.188 3.812 15 N -0.709 5.709 16 C -0.234 4.234 17 H 0.070 0.930 18 C -0.007 4.007 19 N -0.930 5.930 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.123 4.123 25 C -0.118 4.118 26 C -0.114 4.114 27 C -0.133 4.133 28 N -0.293 5.293 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.170 0.830 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.405 0.595 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 14.125 10.069 17.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.102 4.102 3 C -0.307 4.307 4 C -0.090 4.090 5 N -0.145 5.145 6 C 0.075 3.925 7 H 0.129 0.871 8 C -0.223 4.223 9 C -0.195 4.195 10 C 0.302 3.698 11 O -0.436 6.436 12 N -0.345 5.345 13 C -0.006 4.006 14 C 0.096 3.904 15 N -0.350 5.350 16 C -0.365 4.365 17 H 0.088 0.912 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.732 3.268 21 H -0.205 1.205 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.161 4.161 25 C -0.156 4.156 26 C -0.152 4.152 27 C -0.173 4.173 28 N -0.115 5.115 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.162 0.838 33 H 0.187 0.813 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.240 0.760 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.779 12.228 10.827 16.429 hybrid contribution -0.790 0.294 -0.733 1.117 sum 0.988 12.522 10.095 16.114 Atomic orbital electron populations 1.20150 0.86926 1.03214 1.02685 1.22362 0.96921 0.90911 1.00021 1.21346 0.91683 0.99608 1.18034 1.22471 0.99476 0.85450 1.01561 1.48899 1.05120 1.04531 1.55943 1.20948 0.81446 0.94636 0.95452 0.87127 1.22311 0.99153 1.01508 0.99372 1.22048 0.98932 1.00594 0.97973 1.20069 0.83139 0.82508 0.84114 1.90638 1.65296 1.55594 1.32063 1.45753 1.35310 1.44528 1.08916 1.21839 0.87807 0.92444 0.98471 1.20629 0.89062 0.92050 0.88680 1.42385 1.40227 1.23565 1.28872 1.19113 1.08675 0.95757 1.12967 0.91196 1.24681 0.98782 0.98401 0.98489 1.69651 1.30041 1.36833 1.21298 0.86219 0.79769 0.83559 0.77278 1.20547 1.21898 1.21910 1.22688 0.98189 0.97017 0.98205 1.22265 0.97823 0.96478 0.99000 1.21989 0.97611 0.96832 0.98732 1.22611 0.95774 1.01088 0.97829 1.77381 0.86598 1.22885 1.24676 0.90795 0.90606 0.90968 0.83829 0.81253 0.92270 0.91891 0.87763 0.88659 0.87909 0.76006 0.91648 0.92635 0.78106 0.93573 0.91756 0.91669 0.91329 0.92812 0.93065 0.92409 0.93099 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.45 36.00 0.38 -0.28 16 2 C 0.06 0.82 7.22 -82.41 -0.59 0.22 16 3 C -0.28 -3.07 10.74 -40.01 -0.43 -3.50 16 4 C 0.06 0.62 10.59 -17.22 -0.18 0.44 16 5 N -0.36 -4.84 3.53 -54.87 -0.19 -5.03 16 6 C 0.18 2.29 3.05 -67.94 -0.21 2.08 16 7 H 0.11 1.65 7.96 -51.92 -0.41 1.24 16 8 C -0.17 -1.77 8.57 37.16 0.32 -1.45 16 9 C -0.15 -2.02 5.50 -27.88 -0.15 -2.18 16 10 C 0.52 8.21 7.55 -10.98 -0.08 8.12 16 11 O -0.56 -10.09 13.97 5.56 0.08 -10.02 16 12 N -0.70 -11.41 5.24 -60.30 -0.32 -11.73 16 13 C 0.12 2.10 4.28 -4.04 -0.02 2.08 16 14 C 0.19 3.27 0.52 -130.16 -0.07 3.20 16 15 N -0.71 -15.46 4.73 -45.70 -0.22 -15.67 16 16 C -0.23 -5.93 8.43 -15.06 -0.13 -6.06 16 17 H 0.07 1.79 7.29 -52.49 -0.38 1.41 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 19 N -0.93 -26.43 13.06 55.49 0.72 -25.71 16 20 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 C -0.12 -1.79 5.49 -24.74 -0.14 -1.93 16 25 C -0.12 -1.68 6.79 -25.07 -0.17 -1.85 16 26 C -0.11 -1.66 6.80 -25.61 -0.17 -1.84 16 27 C -0.13 -2.22 6.00 -25.61 -0.15 -2.37 16 28 N -0.29 -4.48 12.58 33.67 0.42 -4.06 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.17 1.29 7.26 -52.49 -0.38 0.91 16 34 H 0.06 0.51 7.15 -51.93 -0.37 0.14 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 1.29 5.95 -51.93 -0.31 0.98 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.40 6.57 8.07 -40.82 -0.33 6.24 16 40 H 0.07 1.33 7.49 -51.93 -0.39 0.94 16 41 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 42 H 0.38 9.04 7.70 -40.82 -0.31 8.72 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 45 H 0.06 0.85 8.05 -51.93 -0.42 0.44 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.05 0.77 7.84 -51.93 -0.41 0.36 16 51 H 0.08 1.49 7.17 -51.93 -0.37 1.12 16 LS Contribution 407.37 15.07 6.14 6.14 Total: -1.00 -30.64 407.37 -9.00 -39.64 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -8.71 Total: 15.02 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.90 Total: -5.59 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: 0.42 Total: -62.20 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.64 -9.00 -39.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753666732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.733 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds