Wall clock time and date at job start Tue Mar 31 2020 18:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34668 * 125.99253 * 2 1 4 4 N 1.36883 * 106.82028 * 180.12332 * 3 2 1 5 5 C 1.46499 * 126.39843 * 179.84399 * 4 3 2 6 6 C 1.53005 * 109.47169 * 174.21113 * 5 4 3 7 7 C 1.53005 * 109.47062 * 54.21489 * 5 4 3 8 8 C 1.50695 * 109.47155 * 294.21434 * 5 4 3 9 9 O 1.21279 * 119.99977 * 354.36608 * 8 5 4 10 10 N 1.34776 * 120.00049 * 174.36535 * 8 5 4 11 11 C 1.46502 * 120.00314 * 179.97438 * 10 8 5 12 12 H 1.09001 * 110.81403 * 31.66715 * 11 10 8 13 13 C 1.54883 * 110.75663 * 268.33261 * 11 10 8 14 14 C 1.54265 * 104.19847 * 203.74379 * 13 11 10 15 15 C 1.53876 * 106.59848 * 23.60257 * 14 13 11 16 16 C 1.54269 * 106.59821 * 0.02562 * 15 14 13 17 17 H 1.09006 * 110.48831 * 95.19501 * 16 15 14 18 18 C 1.52990 * 110.49012 * 217.70783 * 16 15 14 19 19 N 1.46504 * 109.47345 * 293.54895 * 18 16 15 20 20 C 1.36932 * 120.00393 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99827 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00033 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00412 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00118 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47282 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.46871 * 299.99805 * 24 22 20 27 27 H 1.48509 * 109.47185 * 59.99537 * 24 22 20 28 28 C 1.35037 * 107.20266 * 359.57948 * 4 3 2 29 29 N 1.30501 * 108.70357 * 0.26561 * 28 4 3 30 30 H 1.09006 * 109.46509 * 270.33064 * 1 2 3 31 31 H 1.09004 * 109.47209 * 30.32272 * 1 2 3 32 32 H 1.08999 * 109.47581 * 150.32742 * 1 2 3 33 33 H 1.08002 * 126.59421 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.46969 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47092 * 300.00567 * 6 5 4 36 36 H 1.09003 * 109.46542 * 59.99954 * 6 5 4 37 37 H 1.08997 * 109.47226 * 299.99738 * 7 5 4 38 38 H 1.08998 * 109.47230 * 60.00021 * 7 5 4 39 39 H 1.09000 * 109.47197 * 179.97438 * 7 5 4 40 40 H 0.97007 * 120.00157 * 0.02562 * 10 8 5 41 41 H 1.08998 * 110.49130 * 85.05919 * 13 11 10 42 42 H 1.09007 * 110.59776 * 322.47418 * 13 11 10 43 43 H 1.09004 * 110.02908 * 264.32889 * 14 13 11 44 44 H 1.08998 * 110.07986 * 142.91537 * 14 13 11 45 45 H 1.08994 * 110.03620 * 240.71920 * 15 14 13 46 46 H 1.09000 * 110.03160 * 119.28565 * 15 14 13 47 47 H 1.08994 * 109.47858 * 173.54701 * 18 16 15 48 48 H 1.08996 * 109.47060 * 53.54261 * 18 16 15 49 49 H 0.97006 * 119.99483 * 359.97438 * 19 18 16 50 50 H 0.97008 * 119.99138 * 0.02562 * 23 22 20 51 51 H 1.08010 * 125.65233 * 180.29790 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2984 1.0896 0.0000 4 7 3.5913 0.6401 -0.0028 5 6 4.7996 1.4683 -0.0071 6 6 6.0321 0.5731 0.1363 7 6 4.7465 2.4540 1.1620 8 6 4.8811 2.2313 -1.3041 9 8 4.0725 2.0210 -2.1831 10 7 5.8525 3.1474 -1.4871 11 6 5.9321 3.8888 -2.7482 12 1 4.9396 4.0362 -3.1741 13 6 6.8589 3.1624 -3.7544 14 6 7.3260 4.2781 -4.7120 15 6 7.1920 5.6033 -3.9415 16 6 6.6488 5.2466 -2.5423 17 1 7.4674 5.1445 -1.8298 18 6 5.6559 6.3089 -2.0666 19 7 6.3609 7.5749 -1.8515 20 6 5.6723 8.6778 -1.4219 21 1 4.6093 8.6144 -1.2419 22 6 6.3405 9.8772 -1.2176 23 7 7.6361 9.9544 -1.4363 24 14 5.4010 11.3819 -0.6322 25 1 6.3370 12.5263 -0.4919 26 1 4.3465 11.7225 -1.6208 27 1 4.7727 11.0928 0.6820 28 6 3.5449 -0.7095 0.0050 29 7 2.2952 -1.0853 0.0066 30 1 -0.3632 0.0059 1.0277 31 1 -0.3634 0.8871 -0.5189 32 1 -0.3634 -0.8929 -0.5087 33 1 1.9752 2.1201 -0.0004 34 1 6.9312 1.1894 0.1327 35 1 5.9732 0.0212 1.0744 36 1 6.0700 -0.1291 -0.6965 37 1 3.8685 3.0918 1.0599 38 1 4.6876 1.9021 2.1001 39 1 5.6457 3.0700 1.1591 40 1 6.4995 3.3154 -0.7842 41 1 6.3053 2.3984 -4.3001 42 1 7.7117 2.7197 -3.2397 43 1 6.6939 4.2970 -5.5998 44 1 8.3653 4.1155 -4.9973 45 1 6.4950 6.2652 -4.4553 46 1 8.1665 6.0833 -3.8520 47 1 5.1973 5.9852 -1.1323 48 1 4.8825 6.4476 -2.8220 49 1 7.3157 7.6319 -2.0134 50 1 8.1239 9.1730 -1.7407 51 1 4.4004 -1.3688 0.0098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753890607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:11 Heat of formation + Delta-G solvation = 23.549688 kcal Electronic energy + Delta-G solvation = -29690.768085 eV Core-core repulsion = 25818.887299 eV Total energy + Delta-G solvation = -3871.880786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.45390 -40.30051 -38.35766 -36.12248 -34.85205 -33.91135 -31.82688 -31.53577 -30.89096 -28.48354 -28.41011 -27.74500 -26.39023 -24.62090 -24.00215 -22.53387 -21.85678 -20.65988 -20.42395 -19.96348 -19.42680 -18.08400 -17.25894 -17.06668 -16.38766 -15.40704 -15.39237 -15.18667 -14.69100 -14.31356 -14.26551 -14.12068 -13.75754 -13.68050 -13.54274 -13.52464 -13.28970 -13.17799 -12.95365 -12.83021 -12.68459 -12.48525 -12.38448 -12.17882 -12.13673 -11.83143 -11.26596 -11.12973 -10.83786 -10.78937 -10.62405 -10.53736 -10.30036 -10.23909 -10.04037 -10.02087 -9.55745 -9.31572 -9.11436 -8.93807 -8.37748 -7.06451 -6.15973 -3.15781 1.87713 2.22349 2.40900 2.91818 3.06673 3.48140 3.51309 3.68835 3.97668 4.14451 4.15602 4.45075 4.48239 4.61501 4.62888 4.70071 4.86243 4.89079 4.98773 5.08280 5.10365 5.20520 5.27087 5.29097 5.36889 5.40569 5.45527 5.52610 5.57204 5.58114 5.62483 5.64627 5.73995 5.81137 5.89856 5.90676 5.94675 6.03534 6.12557 6.16566 6.26865 6.36669 6.43266 6.59190 6.68102 6.72351 7.01367 7.22867 7.75377 7.88843 8.00077 8.70502 9.17117 10.03499 10.18381 11.32590 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012321 B = 0.002834 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.972856 B = 9878.834343 C =11145.527823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.009 4.009 3 C -0.028 4.028 4 N -0.436 5.436 5 C 0.143 3.857 6 C -0.157 4.157 7 C -0.157 4.157 8 C 0.509 3.491 9 O -0.519 6.519 10 N -0.709 5.709 11 C 0.147 3.853 12 H 0.099 0.901 13 C -0.131 4.131 14 C -0.122 4.122 15 C -0.113 4.113 16 C -0.103 4.103 17 H 0.077 0.923 18 C 0.168 3.832 19 N -0.742 5.742 20 C -0.332 4.332 21 H 0.063 0.937 22 C -0.044 4.044 23 N -0.944 5.944 24 Si 1.079 2.921 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.182 3.818 29 N -0.490 5.490 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.167 0.833 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.401 0.599 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.017 0.983 48 H 0.021 0.979 49 H 0.367 0.633 50 H 0.254 0.746 51 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 -20.875 2.783 21.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.137 4.137 3 C -0.160 4.160 4 N -0.119 5.119 5 C 0.054 3.946 6 C -0.215 4.215 7 C -0.215 4.215 8 C 0.292 3.708 9 O -0.393 6.393 10 N -0.360 5.360 11 C 0.042 3.958 12 H 0.117 0.883 13 C -0.170 4.170 14 C -0.160 4.160 15 C -0.151 4.151 16 C -0.122 4.122 17 H 0.096 0.904 18 C 0.040 3.960 19 N -0.387 5.387 20 C -0.463 4.463 21 H 0.081 0.919 22 C -0.242 4.242 23 N -0.589 5.589 24 Si 0.910 3.090 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.223 1.223 28 C -0.100 4.100 29 N -0.209 5.209 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.185 0.815 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.236 0.764 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.035 0.965 48 H 0.038 0.962 49 H 0.200 0.800 50 H 0.065 0.935 51 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.131 -20.138 2.591 20.544 hybrid contribution 0.840 -0.621 -0.199 1.063 sum -2.291 -20.758 2.393 21.021 Atomic orbital electron populations 1.19988 0.87837 1.02545 1.01867 1.20634 0.96408 0.88435 1.08268 1.22298 0.82717 1.00363 1.10666 1.45156 1.05474 1.07051 1.54245 1.20801 0.85739 0.92710 0.95356 1.22150 0.94909 1.00149 1.04248 1.22221 1.04602 0.98419 0.96279 1.20382 0.81555 0.80405 0.88436 1.90782 1.40013 1.65023 1.43495 1.45936 1.31471 1.39719 1.18902 1.22099 1.00502 0.90263 0.82955 0.88271 1.22698 0.98971 0.98064 0.97296 1.22093 1.01113 0.94556 0.98236 1.22074 1.01892 0.96721 0.94399 1.22439 0.98461 0.93426 0.97916 0.90447 1.20597 0.93009 0.85497 0.96894 1.42327 1.07545 1.06692 1.82157 1.20020 0.93633 0.90707 1.41924 0.91886 1.25765 0.97339 1.00031 1.01052 1.70902 1.07087 1.31853 1.49085 0.83256 0.74283 0.75777 0.75721 1.20986 1.22227 1.22271 1.24780 0.97052 0.81774 1.06363 1.70161 1.00309 1.30433 1.19986 0.91698 0.91462 0.91383 0.81542 0.89354 0.89818 0.90647 0.90739 0.90248 0.89625 0.76393 0.91517 0.91470 0.91755 0.91751 0.90867 0.91384 0.96519 0.96162 0.80002 0.93477 0.78266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.42 36.00 0.38 -0.28 16 2 C -0.01 -0.12 7.09 -82.85 -0.59 -0.71 16 3 C -0.03 -0.35 9.99 -16.56 -0.17 -0.51 16 4 N -0.44 -4.85 2.29 -105.82 -0.24 -5.09 16 5 C 0.14 1.27 1.08 -132.97 -0.14 1.13 16 6 C -0.16 -0.89 7.35 37.16 0.27 -0.62 16 7 C -0.16 -1.19 8.30 37.16 0.31 -0.88 16 8 C 0.51 6.02 6.44 -10.99 -0.07 5.94 16 9 O -0.52 -8.38 15.52 5.56 0.09 -8.30 16 10 N -0.71 -7.47 5.01 -51.87 -0.26 -7.73 16 11 C 0.15 1.84 2.69 -65.93 -0.18 1.67 16 12 H 0.10 1.49 7.47 -51.93 -0.39 1.10 16 13 C -0.13 -1.46 6.51 -25.08 -0.16 -1.62 16 14 C -0.12 -1.38 6.80 -25.61 -0.17 -1.56 16 15 C -0.11 -1.59 6.05 -25.61 -0.15 -1.74 16 16 C -0.10 -1.48 2.55 -88.95 -0.23 -1.71 16 17 H 0.08 1.07 8.02 -51.93 -0.42 0.66 16 18 C 0.17 3.23 5.57 -4.04 -0.02 3.21 16 19 N -0.74 -17.96 5.44 -59.92 -0.33 -18.29 16 20 C -0.33 -9.23 9.99 -15.06 -0.15 -9.38 16 21 H 0.06 1.75 7.83 -52.49 -0.41 1.33 16 22 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 23 N -0.94 -28.62 13.70 55.49 0.76 -27.86 16 24 Si 1.08 25.60 29.92 -169.99 -5.09 20.52 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.18 2.06 11.52 -90.38 -1.04 1.02 16 29 N -0.49 -6.78 11.25 -10.87 -0.12 -6.90 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.17 1.91 8.00 -52.49 -0.42 1.49 16 34 H 0.09 0.36 7.97 -51.93 -0.41 -0.05 16 35 H 0.08 0.36 8.06 -51.93 -0.42 -0.06 16 36 H 0.07 0.45 7.67 -51.93 -0.40 0.05 16 37 H 0.07 0.67 7.80 -51.93 -0.41 0.26 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.53 7.27 -51.93 -0.38 0.15 16 40 H 0.40 3.31 7.49 -40.82 -0.31 3.00 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.17 7.77 -51.93 -0.40 0.76 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 49 H 0.37 9.00 6.35 -40.82 -0.26 8.74 16 50 H 0.25 7.53 6.77 -40.82 -0.28 7.25 16 51 H 0.20 1.53 7.15 -52.48 -0.38 1.15 16 LS Contribution 407.40 15.07 6.14 6.14 Total: -1.00 -35.87 407.40 -9.98 -45.84 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -8.71 Total: 9.09 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -2.22 Total: -7.42 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -0.19 Total: -65.87 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.09 Total: 20.52 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.87 -9.98 -45.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753890607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.393 kcal (2) G-P(sol) polarization free energy of solvation -35.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds