Wall clock time and date at job start Tue Mar 31 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30296 * 126.34488 * 2 1 4 4 N 1.28525 * 110.05386 * 180.02562 * 3 2 1 5 5 C 1.31220 * 109.85927 * 359.74090 * 4 3 2 6 6 N 1.38583 * 126.47567 * 180.26042 * 5 4 3 7 7 C 1.46843 * 111.00004 * 264.55948 * 6 5 4 8 8 C 1.53040 * 109.52239 * 185.83511 * 7 6 5 9 9 C 1.53112 * 109.27975 * 300.82218 * 8 7 6 10 10 C 1.50708 * 109.52163 * 177.56098 * 9 8 7 11 11 H 1.08002 * 119.99736 * 240.31742 * 10 9 8 12 12 C 1.37869 * 120.00191 * 60.31754 * 10 9 8 13 13 N 1.31518 * 120.00001 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00149 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47419 * 89.99809 * 14 12 10 16 16 H 1.48505 * 109.47046 * 210.00155 * 14 12 10 17 17 H 1.48499 * 109.46933 * 329.99512 * 14 12 10 18 18 C 1.53116 * 109.16053 * 57.65535 * 9 8 7 19 19 C 1.46848 * 110.99997 * 28.77210 * 6 5 4 20 20 N 1.36452 * 107.05218 * 0.40218 * 5 4 3 21 21 C 1.46504 * 127.13431 * 179.87437 * 20 5 4 22 22 C 1.53003 * 109.46841 * 92.16075 * 21 20 5 23 23 C 1.52994 * 109.82693 * 299.18362 * 22 21 20 24 24 C 1.54502 * 109.82494 * 178.21471 * 22 21 20 25 25 C 1.55301 * 102.20046 * 219.13320 * 24 22 21 26 26 C 1.54954 * 100.98179 * 34.13155 * 25 24 22 27 27 O 1.43240 * 109.82892 * 60.07289 * 22 21 20 28 28 H 1.09002 * 109.47431 * 269.96152 * 1 2 3 29 29 H 1.08995 * 109.46989 * 29.97038 * 1 2 3 30 30 H 1.09005 * 109.46717 * 149.96490 * 1 2 3 31 31 H 1.08990 * 109.46396 * 305.85483 * 7 6 5 32 32 H 1.09004 * 109.45839 * 65.82586 * 7 6 5 33 33 H 1.09000 * 109.50183 * 180.88023 * 8 7 6 34 34 H 1.08997 * 109.50235 * 60.76721 * 8 7 6 35 35 H 1.09001 * 109.52703 * 297.74784 * 9 8 7 36 36 H 0.96996 * 120.00203 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.50435 * 182.40457 * 18 9 8 38 38 H 1.08998 * 109.50381 * 62.28898 * 18 9 8 39 39 H 1.09006 * 109.46134 * 294.17498 * 19 6 5 40 40 H 1.08997 * 109.46638 * 54.14076 * 19 6 5 41 41 H 1.09001 * 109.47057 * 332.16184 * 21 20 5 42 42 H 1.08995 * 109.46877 * 212.15839 * 21 20 5 43 43 H 1.08998 * 109.47624 * 179.43515 * 23 22 21 44 44 H 1.09001 * 109.46875 * 299.43849 * 23 22 21 45 45 H 1.09004 * 109.47175 * 59.43140 * 23 22 21 46 46 H 1.09003 * 110.89230 * 100.94995 * 24 22 21 47 47 H 1.09005 * 110.85089 * 337.29632 * 24 22 21 48 48 H 1.09002 * 111.12805 * 276.19144 * 25 24 22 49 49 H 1.09002 * 111.12495 * 152.07124 * 25 24 22 50 50 H 1.09000 * 110.30807 * 82.44736 * 26 25 24 51 51 H 1.08992 * 110.30814 * 204.52194 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0495 0.0000 4 7 3.5128 0.6890 -0.0005 5 6 3.5945 -0.6207 0.0047 6 7 4.7580 -1.3736 0.0109 7 6 5.1331 -1.7738 -1.3512 8 6 6.3341 -2.7205 -1.2936 9 6 7.5054 -2.0104 -0.6094 10 6 8.6719 -2.9578 -0.4960 11 1 9.0664 -3.2146 0.4761 12 6 9.2355 -3.4966 -1.6330 13 7 8.7555 -3.1834 -2.8167 14 14 10.6810 -4.6714 -1.4924 15 1 10.1779 -6.0642 -1.3818 16 1 11.5377 -4.5488 -2.6991 17 1 11.4765 -4.3350 -0.2844 18 6 7.0730 -1.5613 0.7891 19 6 5.8507 -0.6481 0.6712 20 7 2.3174 -1.1013 -0.0005 21 6 1.9010 -2.5059 -0.0001 22 6 1.6973 -2.9770 1.4412 23 6 3.0104 -2.8564 2.2171 24 6 1.2146 -4.4447 1.4495 25 6 0.1684 -4.4397 2.5972 26 6 -0.4244 -3.0156 2.4500 27 8 0.6850 -2.1846 2.0729 28 1 -0.3634 -0.0007 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5144 31 1 4.2930 -2.2812 -1.8250 32 1 5.3961 -0.8885 -1.9303 33 1 6.6221 -3.0050 -2.3057 34 1 6.0676 -3.6123 -0.7263 35 1 7.7975 -1.1402 -1.1973 36 1 9.1517 -3.5627 -3.6167 37 1 7.8890 -1.0174 1.2652 38 1 6.8182 -2.4347 1.3893 39 1 6.1103 0.2319 0.0825 40 1 5.5317 -0.3379 1.6662 41 1 2.6712 -3.1133 -0.4755 42 1 0.9662 -2.6078 -0.5513 43 1 2.8564 -3.1839 3.2452 44 1 3.7692 -3.4815 1.7464 45 1 3.3412 -1.8178 2.2123 46 1 2.0369 -5.1231 1.6770 47 1 0.7472 -4.7048 0.4996 48 1 0.6488 -4.5668 3.5673 49 1 -0.5946 -5.2013 2.4366 50 1 -1.1884 -3.0023 1.6726 51 1 -0.8446 -2.6809 3.3983 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434613607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:52 Heat of formation + Delta-G solvation = 32.631966 kcal Electronic energy + Delta-G solvation = -31204.030499 eV Core-core repulsion = 27332.543550 eV Total energy + Delta-G solvation = -3871.486949 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.73540 -40.05016 -38.31373 -35.20679 -34.11168 -32.76440 -32.00625 -31.50122 -30.53255 -29.98915 -27.37224 -26.97947 -25.96066 -25.53570 -22.72550 -22.33244 -22.17778 -21.08425 -20.65890 -19.90260 -18.59952 -17.07432 -16.92519 -16.42388 -16.38989 -15.83662 -15.69066 -14.86501 -14.57551 -14.35867 -14.07449 -13.78033 -13.55635 -13.42366 -13.03563 -12.85262 -12.79752 -12.61773 -12.55970 -12.46542 -12.33187 -12.07673 -11.95871 -11.59083 -11.50931 -11.38673 -11.18252 -11.04548 -10.94305 -10.92507 -10.56879 -10.29738 -10.29128 -10.25886 -10.08252 -9.62513 -9.51721 -9.10556 -8.92062 -8.78370 -8.34882 -7.93518 -6.01700 -4.07014 2.02795 2.45525 3.15780 3.28539 3.36054 3.39295 3.46823 4.06438 4.13788 4.32550 4.42071 4.48118 4.52416 4.59586 4.72530 4.88083 4.96021 5.12947 5.17358 5.28676 5.33594 5.36292 5.39004 5.42043 5.51473 5.57224 5.64690 5.71263 5.76852 5.78685 5.83014 5.84664 6.02891 6.05035 6.12471 6.22768 6.28997 6.34065 6.37156 6.57096 6.76676 6.77218 6.86824 6.94984 7.07818 7.34014 7.36041 7.68709 7.73447 7.96725 8.06179 8.42054 8.96657 9.09243 9.57878 11.04719 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.003496 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.248365 B = 8007.237366 C = 9070.309955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.181 3.819 3 N -0.296 5.296 4 N -0.324 5.324 5 C 0.365 3.635 6 N -0.456 5.456 7 C 0.064 3.936 8 C -0.101 4.101 9 C 0.046 3.954 10 C -0.510 4.510 11 H 0.055 0.945 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.106 4.106 19 C 0.077 3.923 20 N -0.464 5.464 21 C 0.111 3.889 22 C 0.096 3.904 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.154 4.154 26 C 0.048 3.952 27 O -0.365 6.365 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.099 0.901 34 H 0.045 0.955 35 H 0.025 0.975 36 H 0.260 0.740 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.059 0.941 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.744 -3.528 7.451 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 N -0.137 5.137 4 N -0.168 5.168 5 C 0.009 3.991 6 N -0.182 5.182 7 C -0.062 4.062 8 C -0.140 4.140 9 C 0.028 3.972 10 C -0.548 4.548 11 H 0.074 0.926 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.718 3.282 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.144 4.144 19 C -0.050 4.050 20 N -0.158 5.158 21 C -0.013 4.013 22 C 0.055 3.945 23 C -0.203 4.203 24 C -0.181 4.181 25 C -0.191 4.191 26 C -0.028 4.028 27 O -0.284 6.284 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.064 0.936 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.101 0.899 50 H 0.077 0.923 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.323 -2.322 7.534 21.799 hybrid contribution 0.468 -1.715 -0.456 1.835 sum -19.855 -4.037 7.078 21.462 Atomic orbital electron populations 1.20055 0.84306 1.03091 1.03735 1.24582 0.96324 0.82371 1.05432 1.73941 0.96608 1.24185 1.18935 1.74635 1.11877 1.08008 1.22275 1.22756 0.85497 0.88928 1.01934 1.58971 1.00407 1.38229 1.20591 1.22445 0.99410 0.99595 0.84759 1.21721 0.91703 0.96054 1.04478 1.18710 0.92848 0.95689 0.89964 1.21176 1.14373 1.26633 0.92601 0.92632 1.24960 0.96970 0.96589 0.95427 1.69859 1.41473 1.44366 0.97416 0.86632 0.82730 0.81310 0.77543 1.20791 1.21327 1.19951 1.21738 0.93762 0.97849 1.01040 1.22098 0.89795 0.95696 0.97378 1.46002 1.05928 1.07748 1.56126 1.22251 1.02221 0.79382 0.97426 1.22482 0.90423 0.90118 0.91445 1.22006 0.94770 1.03969 0.99532 1.23164 0.99857 0.95493 0.99598 1.23237 0.98689 0.97713 0.99500 1.23382 0.89672 0.89646 1.00142 1.88536 1.28164 1.33319 1.78423 0.89609 0.89611 0.91353 0.92929 0.94221 0.88315 0.93589 0.95648 0.93039 0.92309 0.92400 0.93365 0.91909 0.87220 0.89163 0.92517 0.90158 0.91628 0.89050 0.90231 0.90237 0.89866 0.92291 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.53 9.66 36.01 0.35 -0.19 16 2 C 0.18 2.73 7.71 -154.02 -1.19 1.54 16 3 N -0.30 -5.58 12.18 32.99 0.40 -5.17 16 4 N -0.32 -6.56 11.57 30.32 0.35 -6.21 16 5 C 0.37 6.54 5.28 -318.87 -1.68 4.85 16 6 N -0.46 -8.18 4.23 -174.55 -0.74 -8.92 16 7 C 0.06 1.23 5.40 -3.83 -0.02 1.21 16 8 C -0.10 -2.22 5.12 -26.65 -0.14 -2.36 16 9 C 0.05 1.10 2.16 -91.65 -0.20 0.91 16 10 C -0.51 -13.44 8.56 -34.44 -0.29 -13.73 16 11 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 12 C 0.06 1.64 5.31 -17.82 -0.09 1.55 16 13 N -0.89 -24.63 11.37 55.43 0.63 -24.00 16 14 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 18 C -0.11 -2.14 5.32 -26.66 -0.14 -2.29 16 19 C 0.08 1.46 5.00 -3.84 -0.02 1.44 16 20 N -0.46 -6.88 2.42 -114.08 -0.28 -7.15 16 21 C 0.11 1.24 5.05 -4.04 -0.02 1.22 16 22 C 0.10 0.98 1.02 -89.83 -0.09 0.89 16 23 C -0.15 -1.81 8.12 37.15 0.30 -1.51 16 24 C -0.14 -1.05 6.10 -24.72 -0.15 -1.20 16 25 C -0.15 -0.96 7.15 -24.48 -0.18 -1.14 16 26 C 0.05 0.35 7.78 38.19 0.30 0.64 16 27 O -0.37 -3.94 9.33 -35.23 -0.33 -4.26 16 28 H 0.09 0.83 7.86 -51.93 -0.41 0.42 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.55 7.32 -51.93 -0.38 0.17 16 31 H 0.05 0.91 7.60 -51.93 -0.39 0.51 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 2.44 6.18 -51.93 -0.32 2.12 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 40 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 41 H 0.11 1.26 7.64 -51.93 -0.40 0.86 16 42 H 0.09 0.80 7.32 -51.93 -0.38 0.42 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.02 6.40 -51.93 -0.33 0.69 16 46 H 0.09 0.67 7.83 -51.93 -0.41 0.26 16 47 H 0.08 0.48 7.85 -51.93 -0.41 0.08 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -30.96 392.60 -11.21 -42.18 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.88 Total: 0.07 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -3.27 Total: -8.16 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.37 Total: -51.45 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.33 Total: -4.26 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.96 -11.21 -42.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434613607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.809 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds