Wall clock time and date at job start Tue Mar 31 2020 18:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50696 * 109.47133 * 2 1 4 4 N 1.30453 * 125.99203 * 269.96104 * 3 2 1 5 5 N 1.39933 * 108.89943 * 180.02562 * 4 3 2 6 6 C 1.46497 * 125.75393 * 179.97438 * 5 4 3 7 7 C 1.34259 * 108.49028 * 359.97438 * 5 4 3 8 8 C 1.38042 * 107.41806 * 0.02562 * 7 5 4 9 9 C 1.47429 * 126.41284 * 180.26258 * 8 7 5 10 10 O 1.21605 * 119.99874 * 217.23039 * 9 8 7 11 11 N 1.34779 * 120.00214 * 37.22772 * 9 8 7 12 12 C 1.46928 * 120.63075 * 5.03750 * 11 9 8 13 13 C 1.53624 * 108.54245 * 126.36429 * 12 11 9 14 14 C 1.53042 * 109.24283 * 54.85782 * 13 12 11 15 15 C 1.53040 * 109.53520 * 298.51027 * 14 13 12 16 16 C 1.46929 * 120.63160 * 185.31220 * 11 9 8 17 17 H 1.09002 * 109.58249 * 113.80289 * 16 11 9 18 18 C 1.52997 * 109.58645 * 353.37920 * 16 11 9 19 19 H 1.09000 * 109.47450 * 55.96145 * 18 16 11 20 20 C 1.52995 * 109.47173 * 175.96332 * 18 16 11 21 21 N 1.46508 * 109.47049 * 295.96482 * 18 16 11 22 22 C 1.36936 * 119.99857 * 155.00186 * 21 18 16 23 23 H 1.07993 * 120.00186 * 359.97438 * 22 21 18 24 24 C 1.38814 * 119.99798 * 179.97438 * 22 21 18 25 25 N 1.31617 * 119.99701 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00139 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46792 * 89.99768 * 26 24 22 28 28 H 1.48493 * 109.46977 * 210.00154 * 26 24 22 29 29 H 1.48499 * 109.46745 * 330.00183 * 26 24 22 30 30 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47195 * 299.99682 * 1 2 3 32 32 H 1.08999 * 109.47588 * 59.99845 * 1 2 3 33 33 H 1.09002 * 109.47195 * 240.00318 * 2 1 3 34 34 H 1.08999 * 109.47588 * 120.00155 * 2 1 3 35 35 H 1.09006 * 109.47124 * 90.01884 * 6 5 4 36 36 H 1.08999 * 109.47437 * 210.02264 * 6 5 4 37 37 H 1.09005 * 109.47314 * 330.02781 * 6 5 4 38 38 H 1.07998 * 126.28893 * 180.02562 * 7 5 4 39 39 H 1.08999 * 109.58446 * 246.20160 * 12 11 9 40 40 H 1.09002 * 109.58398 * 6.62470 * 12 11 9 41 41 H 1.08998 * 109.63420 * 294.86497 * 13 12 11 42 42 H 1.09000 * 109.42971 * 174.72800 * 13 12 11 43 43 H 1.08993 * 109.45974 * 178.48655 * 14 13 12 44 44 H 1.09000 * 109.45910 * 58.52994 * 14 13 12 45 45 H 1.08998 * 109.49736 * 301.41267 * 15 14 13 46 46 H 1.08999 * 109.49252 * 181.31315 * 15 14 13 47 47 H 1.09004 * 109.47052 * 66.32215 * 20 18 16 48 48 H 1.08998 * 109.47444 * 186.31390 * 20 18 16 49 49 H 1.08995 * 109.47169 * 306.32043 * 20 18 16 50 50 H 0.96996 * 119.99554 * 335.00308 * 21 18 16 51 51 H 0.97007 * 119.99979 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2885 2.1433 -1.0555 5 7 2.7346 3.4043 -0.6442 6 6 3.1251 4.5046 -1.5290 7 6 2.7445 3.4355 0.6980 8 6 2.3085 2.2037 1.1432 9 6 2.1537 1.7857 2.5485 10 8 2.4268 0.6474 2.8778 11 7 1.7096 2.6652 3.4682 12 6 1.2715 4.0094 3.0683 13 6 -0.1455 4.2438 3.6136 14 6 -0.1499 4.0055 5.1254 15 6 0.2439 2.5555 5.4160 16 6 1.6600 2.3000 4.8905 17 1 2.3722 2.9077 5.4488 18 6 2.0076 0.8188 5.0522 19 1 2.9806 0.6227 4.6018 20 6 2.0537 0.4653 6.5400 21 7 0.9884 0.0027 4.3876 22 6 1.3002 -1.2550 3.9446 23 1 2.2975 -1.6451 4.0848 24 6 0.3344 -2.0285 3.3155 25 7 -0.8808 -1.5528 3.1443 26 14 0.7599 -3.7439 2.7105 27 1 0.4915 -4.7295 3.7883 28 1 -0.0703 -4.0701 1.5233 29 1 2.1968 -3.7955 2.3391 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.2532 5.1208 -1.7490 36 1 3.8854 5.1127 -1.0389 37 1 3.5270 4.0992 -2.4576 38 1 3.0393 4.2708 1.3158 39 1 1.9526 4.7535 3.4810 40 1 1.2627 4.0823 1.9807 41 1 -0.8409 3.5546 3.1346 42 1 -0.4487 5.2700 3.4061 43 1 -1.1476 4.1970 5.5202 44 1 0.5639 4.6781 5.6011 45 1 -0.4552 1.8822 4.9201 46 1 0.2179 2.3802 6.4915 47 1 1.0542 0.5540 6.9657 48 1 2.4099 -0.5579 6.6595 49 1 2.7298 1.1478 7.0548 50 1 0.0929 0.3532 4.2614 51 1 -1.5558 -2.0935 2.7049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566529708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:42 Heat of formation + Delta-G solvation = 74.015760 kcal Electronic energy + Delta-G solvation = -32279.840986 eV Core-core repulsion = 28410.148572 eV Total energy + Delta-G solvation = -3869.692413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.42013 -40.94509 -37.91967 -36.73323 -35.57183 -34.03117 -33.58829 -32.54977 -31.34871 -30.82343 -29.54809 -27.77310 -26.18479 -25.60179 -24.71437 -24.27009 -22.96571 -21.75956 -21.49323 -20.41182 -19.60940 -18.90409 -17.71695 -17.07848 -16.64390 -16.54757 -16.19884 -15.86208 -15.59820 -15.50752 -15.30798 -15.07482 -14.80857 -14.49972 -14.33279 -14.00814 -13.97796 -13.81890 -13.60168 -13.49929 -13.30954 -13.08049 -12.92258 -12.82420 -12.73726 -12.57449 -12.36654 -12.22455 -12.07016 -12.03415 -11.87524 -11.64197 -11.59775 -11.38932 -11.26376 -11.12513 -10.66252 -10.21151 -9.61828 -9.43380 -9.10013 -8.39547 -7.60356 -4.75923 0.75797 1.33299 1.46189 1.48327 1.55022 1.58792 2.31669 2.76011 2.76638 3.47488 3.72912 3.79628 3.89885 4.04169 4.09185 4.10451 4.19776 4.25345 4.38139 4.41752 4.47691 4.48764 4.50865 4.52485 4.59034 4.69425 4.73608 4.74064 4.77563 4.79869 4.92552 4.99445 5.03296 5.06649 5.11544 5.16798 5.22351 5.23800 5.33452 5.38169 5.40867 5.53644 5.60224 5.65748 5.70546 5.81126 6.05473 6.13974 6.60854 6.66765 6.93576 7.68043 7.90212 8.46907 8.72469 9.63691 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009366 B = 0.006700 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.887424 B = 4178.159584 C = 6183.393032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.043 4.043 3 C 0.115 3.885 4 N -0.330 5.330 5 N -0.361 5.361 6 C 0.089 3.911 7 C 0.108 3.892 8 C -0.299 4.299 9 C 0.560 3.440 10 O -0.499 6.499 11 N -0.608 5.608 12 C 0.102 3.898 13 C -0.132 4.132 14 C -0.108 4.108 15 C -0.127 4.127 16 C 0.153 3.847 17 H 0.094 0.906 18 C 0.169 3.831 19 H 0.052 0.948 20 C -0.159 4.159 21 N -0.697 5.697 22 C -0.144 4.144 23 H 0.044 0.956 24 C -0.073 4.073 25 N -0.965 5.965 26 Si 0.927 3.073 27 H -0.301 1.301 28 H -0.301 1.301 29 H -0.288 1.288 30 H 0.041 0.959 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.090 0.910 38 H 0.227 0.773 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.030 0.970 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.032 0.968 46 H 0.075 0.925 47 H 0.043 0.957 48 H 0.026 0.974 49 H 0.069 0.931 50 H 0.368 0.632 51 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 23.289 -2.767 24.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.082 4.082 3 C -0.050 4.050 4 N -0.153 5.153 5 N -0.139 5.139 6 C -0.050 4.050 7 C -0.043 4.043 8 C -0.314 4.314 9 C 0.347 3.653 10 O -0.372 6.372 11 N -0.344 5.344 12 C -0.020 4.020 13 C -0.170 4.170 14 C -0.146 4.146 15 C -0.165 4.165 16 C 0.050 3.950 17 H 0.112 0.888 18 C 0.060 3.940 19 H 0.070 0.930 20 C -0.219 4.219 21 N -0.337 5.337 22 C -0.277 4.277 23 H 0.062 0.938 24 C -0.263 4.263 25 N -0.621 5.621 26 Si 0.762 3.238 27 H -0.230 1.230 28 H -0.229 1.229 29 H -0.214 1.214 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.144 0.856 37 H 0.108 0.892 38 H 0.243 0.757 39 H 0.118 0.882 40 H 0.104 0.896 41 H 0.049 0.951 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.051 0.949 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.046 0.954 49 H 0.088 0.912 50 H 0.201 0.799 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 7.630 22.687 -4.054 24.276 hybrid contribution -0.593 -1.875 0.265 1.984 sum 7.037 20.812 -3.789 22.294 Atomic orbital electron populations 1.21230 0.93967 1.00787 1.00168 1.19872 0.96326 0.89516 1.02530 1.22231 0.96406 0.96355 0.90056 1.77034 1.23456 0.92201 1.22588 1.48659 1.48631 1.11139 1.05509 1.22382 1.03009 0.85149 0.94468 1.23525 0.97700 0.97977 0.85115 1.20511 1.19952 0.96520 0.94424 1.17689 0.78818 0.84722 0.84089 1.91065 1.48249 1.18732 1.79162 1.47789 1.65600 1.14727 1.06261 1.22196 0.95691 0.83086 1.00983 1.21966 0.96604 1.02155 0.96287 1.21468 1.02134 0.95098 0.95871 1.21899 0.96153 0.97666 1.00829 1.21487 0.97077 0.95576 0.80909 0.88833 1.20682 0.94043 0.88971 0.90266 0.93050 1.22420 1.00648 1.00136 0.98705 1.42411 1.09421 1.14048 1.67832 1.19017 0.93504 0.90796 1.24427 0.93768 1.24788 0.96524 0.99876 1.05160 1.69740 1.02803 1.36924 1.52609 0.85757 0.76407 0.84252 0.77390 1.22951 1.22874 1.21448 0.93960 0.94677 0.92540 0.90871 0.91103 0.88722 0.85639 0.89168 0.75724 0.88238 0.89639 0.95093 0.88299 0.91719 0.89405 0.94900 0.90597 0.93791 0.95447 0.91195 0.79858 0.95503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.55 9.89 71.98 0.71 -3.83 16 2 C -0.04 -1.87 6.31 29.84 0.19 -1.68 16 3 C 0.12 4.43 6.51 43.51 0.28 4.71 16 4 N -0.33 -11.01 12.50 -46.68 -0.58 -11.60 16 5 N -0.36 -8.24 3.98 -367.78 -1.46 -9.71 16 6 C 0.09 0.91 11.44 127.77 1.46 2.37 16 7 C 0.11 2.44 9.06 84.28 0.76 3.20 16 8 C -0.30 -10.30 5.34 -20.15 -0.11 -10.41 16 9 C 0.56 21.91 7.16 86.66 0.62 22.53 16 10 O -0.50 -24.45 8.20 -4.05 -0.03 -24.48 16 11 N -0.61 -18.74 2.96 -798.03 -2.36 -21.10 16 12 C 0.10 2.09 5.41 86.51 0.47 2.56 16 13 C -0.13 -2.78 6.10 30.82 0.19 -2.59 16 14 C -0.11 -2.27 5.88 30.62 0.18 -2.09 16 15 C -0.13 -3.76 4.85 30.67 0.15 -3.61 16 16 C 0.15 4.77 2.73 44.97 0.12 4.89 16 17 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 18 C 0.17 6.94 1.88 44.99 0.08 7.03 16 19 H 0.05 2.40 6.07 -2.50 -0.02 2.39 16 20 C -0.16 -5.78 9.09 71.98 0.65 -5.13 16 21 N -0.70 -35.85 3.49 -322.94 -1.13 -36.97 16 22 C -0.14 -8.45 7.87 84.03 0.66 -7.79 16 23 H 0.04 2.71 7.83 -2.91 -0.02 2.68 16 24 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 25 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 26 Si 0.93 50.63 29.55 68.60 2.03 52.66 16 27 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 28 H -0.30 -16.54 7.11 99.48 0.71 -15.84 16 29 H -0.29 -15.58 7.11 99.48 0.71 -14.88 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.07 3.67 6.72 -2.39 -0.02 3.65 16 35 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.09 0.96 8.14 -2.38 -0.02 0.95 16 38 H 0.23 2.68 7.05 -2.91 -0.02 2.66 16 39 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.09 1.70 4.57 -2.39 -0.01 1.69 16 41 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.03 1.29 6.11 -2.39 -0.01 1.28 16 46 H 0.08 2.11 7.01 -2.39 -0.02 2.09 16 47 H 0.04 1.60 7.02 -2.38 -0.02 1.58 16 48 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.37 20.40 5.72 -92.71 -0.53 19.87 16 51 H 0.24 14.77 8.31 -92.70 -0.77 14.00 16 Total: -1.00 -81.66 388.61 4.03 -77.63 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.39 Total: 27.71 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 6.90 Total: 6.19 kcal Atomic # 7 Polarization: -134.46 SS G_CDS: -5.26 Total: -139.71 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.03 Total: -24.48 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.03 Total: 52.66 kcal Total: -81.66 4.03 -77.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566529708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.648 kcal (2) G-P(sol) polarization free energy of solvation -81.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds