Wall clock time and date at job start Tue Mar 31 2020 18:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30505 * 125.65215 * 2 1 4 4 C 1.34128 * 109.25804 * 180.02562 * 3 2 1 5 5 C 1.34671 * 108.01815 * 359.72669 * 4 3 2 6 6 N 1.35043 * 125.65192 * 180.02562 * 2 1 3 7 7 C 1.46507 * 126.39530 * 359.96416 * 6 2 1 8 8 C 1.50701 * 109.46829 * 85.00121 * 7 6 2 9 9 O 1.21283 * 120.00081 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99801 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99743 * 181.93442 * 10 8 7 12 12 C 1.53001 * 109.47314 * 47.01678 * 11 10 8 13 13 N 1.46499 * 109.47124 * 54.14034 * 12 11 10 14 14 C 1.36934 * 119.99729 * 177.74662 * 13 12 11 15 15 H 1.08003 * 120.00324 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99738 * 180.02562 * 14 13 12 17 17 N 1.31614 * 120.00046 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99797 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47502 * 59.99542 * 18 16 14 20 20 H 1.48503 * 109.46887 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47144 * 299.99304 * 18 16 14 22 22 C 1.53006 * 109.46829 * 167.01430 * 11 10 8 23 23 C 1.52998 * 109.47216 * 60.00309 * 22 11 10 24 24 C 1.52992 * 109.47478 * 59.99579 * 23 22 11 25 25 C 1.52995 * 109.47575 * 300.00477 * 24 23 22 26 26 C 1.52997 * 109.47371 * 59.99576 * 25 24 23 27 27 H 1.09005 * 109.47419 * 60.00217 * 26 25 24 28 28 C 1.52999 * 109.47590 * 180.02562 * 26 25 24 29 29 H 1.09005 * 109.47246 * 269.95928 * 1 2 3 30 30 H 1.09001 * 109.47504 * 29.96271 * 1 2 3 31 31 H 1.09001 * 109.47175 * 149.95949 * 1 2 3 32 32 H 1.07998 * 125.99057 * 180.02562 * 4 3 2 33 33 H 1.07995 * 126.58947 * 180.28199 * 5 4 3 34 34 H 1.08990 * 109.47230 * 325.00116 * 7 6 2 35 35 H 1.08995 * 109.46897 * 204.99833 * 7 6 2 36 36 H 0.97001 * 119.99798 * 1.94529 * 10 8 7 37 37 H 1.08999 * 109.46965 * 174.14748 * 12 11 10 38 38 H 1.09003 * 109.46517 * 294.13970 * 12 11 10 39 39 H 0.97000 * 119.99925 * 357.75206 * 13 12 11 40 40 H 0.96997 * 120.00184 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.47222 * 180.02562 * 22 11 10 42 42 H 1.08994 * 109.47006 * 300.00254 * 22 11 10 43 43 H 1.08998 * 109.47209 * 180.02562 * 23 22 11 44 44 H 1.09004 * 109.46802 * 299.99983 * 23 22 11 45 45 H 1.09007 * 109.47252 * 60.00190 * 24 23 22 46 46 H 1.09003 * 109.47714 * 180.02562 * 24 23 22 47 47 H 1.09004 * 109.46996 * 299.99774 * 25 24 23 48 48 H 1.09001 * 109.47840 * 179.97438 * 25 24 23 49 49 H 1.09003 * 109.47468 * 172.19314 * 28 26 25 50 50 H 1.09006 * 109.46820 * 292.19156 * 28 26 25 51 51 H 1.08994 * 109.46937 * 52.18962 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6819 -0.0006 5 6 3.5925 -0.6643 0.0052 6 7 2.2941 -1.0973 -0.0005 7 6 1.8425 -2.4911 -0.0004 8 6 1.5692 -2.9306 -1.4157 9 8 1.7357 -2.1561 -2.3341 10 7 1.1407 -4.1847 -1.6610 11 6 0.9156 -4.6252 -3.0399 12 6 2.1115 -4.2232 -3.9055 13 7 3.3443 -4.7384 -3.3046 14 6 4.5458 -4.5410 -3.9312 15 1 4.5845 -4.0059 -4.8685 16 6 5.7138 -5.0297 -3.3621 17 7 5.6666 -5.6822 -2.2201 18 14 7.3529 -4.7598 -4.2165 19 1 7.6042 -3.3029 -4.3566 20 1 8.4384 -5.3736 -3.4101 21 1 7.3193 -5.3879 -5.5617 22 6 0.7533 -6.1464 -3.0692 23 6 -0.4427 -6.5484 -2.2038 24 6 -1.7112 -5.8895 -2.7490 25 6 -1.5490 -4.3685 -2.7198 26 6 -0.3531 -3.9664 -3.5852 27 1 -0.5205 -4.2942 -4.6113 28 6 -0.1904 -2.4453 -3.5555 29 1 -0.3634 -0.0007 1.0277 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3633 -0.8896 -0.5145 32 1 4.4098 1.3410 -0.0003 33 1 4.4775 -1.2832 0.0106 34 1 0.9300 -2.5773 0.5894 35 1 2.6167 -3.1238 0.4334 36 1 0.9812 -4.7955 -0.9245 37 1 1.9927 -4.6403 -4.9055 38 1 2.1649 -3.1364 -3.9690 39 1 3.3094 -5.2194 -2.4630 40 1 6.4827 -6.0240 -1.8226 41 1 0.5862 -6.4743 -4.0953 42 1 1.6570 -6.6157 -2.6807 43 1 -0.5580 -7.6321 -2.2243 44 1 -0.2752 -6.2205 -1.1778 45 1 -1.8788 -6.2173 -3.7750 46 1 -2.5632 -6.1755 -2.1322 47 1 -1.3815 -4.0406 -1.6938 48 1 -2.4526 -3.8990 -3.1086 49 1 0.7381 -2.1693 -4.0554 50 1 -1.0318 -1.9799 -4.0690 51 1 -0.1617 -2.1032 -2.5211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714185708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:06 Heat of formation + Delta-G solvation = 48.453226 kcal Electronic energy + Delta-G solvation = -31737.946114 eV Core-core repulsion = 27867.145226 eV Total energy + Delta-G solvation = -3870.800888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.92433 -40.72780 -37.84708 -34.70445 -33.83212 -33.26133 -32.45125 -31.57945 -31.31921 -29.55618 -27.64896 -26.59596 -26.24939 -25.04575 -23.00724 -21.62761 -21.25210 -21.04386 -20.50877 -19.48237 -18.85689 -17.44365 -17.19104 -16.93496 -15.80367 -15.29114 -15.05937 -14.85045 -14.35516 -14.22839 -13.95024 -13.85826 -13.70348 -13.52288 -13.34208 -13.07892 -12.82258 -12.75261 -12.53501 -12.48684 -12.28234 -12.20642 -11.83885 -11.72288 -11.50534 -11.37857 -11.15789 -10.89637 -10.81973 -10.76522 -10.44673 -10.16034 -10.04031 -9.81403 -9.75287 -9.68739 -9.64229 -9.07446 -8.67819 -8.44214 -8.05556 -6.82020 -5.75517 -3.00314 2.21340 2.84189 2.89962 3.41466 3.45264 3.49188 3.51151 3.53667 4.60763 4.64137 4.67168 4.76850 4.80520 4.83259 4.87623 5.00330 5.06234 5.18704 5.21488 5.45043 5.49130 5.50416 5.54614 5.58398 5.60892 5.66715 5.67439 5.73055 5.85867 5.94641 6.01337 6.05935 6.06210 6.16174 6.20146 6.23116 6.31653 6.35834 6.43207 6.51771 6.58794 6.63103 6.75081 6.99666 7.02441 7.19342 7.37538 7.73397 7.81777 8.34508 8.44703 8.55902 9.56340 10.14406 10.50243 11.47761 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007645 B = 0.006218 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3661.581550 B = 4501.654457 C = 7293.770328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.209 3.791 3 N -0.495 5.495 4 C -0.035 4.035 5 C -0.034 4.034 6 N -0.435 5.435 7 C 0.083 3.917 8 C 0.498 3.502 9 O -0.490 6.490 10 N -0.707 5.707 11 C 0.184 3.816 12 C 0.132 3.868 13 N -0.722 5.722 14 C -0.225 4.225 15 H 0.066 0.934 16 C -0.016 4.016 17 N -0.939 5.939 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.109 4.109 26 C -0.093 4.093 27 H 0.072 0.928 28 C -0.139 4.139 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.393 0.607 37 H 0.017 0.983 38 H 0.063 0.937 39 H 0.380 0.620 40 H 0.253 0.747 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.081 0.919 50 H 0.028 0.972 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.399 1.500 6.381 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.053 4.053 3 N -0.215 5.215 4 C -0.182 4.182 5 C -0.167 4.167 6 N -0.117 5.117 7 C -0.044 4.044 8 C 0.282 3.718 9 O -0.364 6.364 10 N -0.361 5.361 11 C 0.098 3.902 12 C 0.004 3.996 13 N -0.366 5.366 14 C -0.356 4.356 15 H 0.084 0.916 16 C -0.211 4.211 17 N -0.589 5.589 18 Si 0.735 3.265 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.146 4.146 26 C -0.113 4.113 27 H 0.091 0.909 28 C -0.195 4.195 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.184 0.816 33 H 0.191 0.809 34 H 0.128 0.872 35 H 0.140 0.860 36 H 0.228 0.772 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.214 0.786 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.075 0.925 49 H 0.100 0.900 50 H 0.047 0.953 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.450 2.800 5.572 17.593 hybrid contribution 1.468 -1.446 0.094 2.063 sum -14.982 1.353 5.666 16.075 Atomic orbital electron populations 1.20114 0.85599 1.03907 1.02662 1.23074 0.95329 0.81363 1.05502 1.70176 1.02362 1.28189 1.20752 1.22136 0.94577 0.92729 1.08752 1.22748 0.86902 0.96870 1.10185 1.44735 1.06713 1.05783 1.54510 1.21690 1.03504 0.81988 0.97233 1.20191 0.78439 0.82835 0.90356 1.90789 1.48326 1.53227 1.44020 1.45778 1.68681 1.12911 1.08695 1.20603 0.95000 0.93310 0.81311 1.21320 0.85113 0.99638 0.93494 1.42157 1.01100 1.67023 1.26366 1.19170 0.84824 1.28452 1.03186 0.91601 1.24625 0.97489 1.01444 0.97528 1.69621 1.27007 1.43231 1.19053 0.86310 0.83999 0.77657 0.78540 1.21399 1.21808 1.21440 1.21791 0.98669 0.94120 1.01183 1.21558 0.94911 1.00046 0.99150 1.21552 0.97336 0.95655 1.01125 1.21545 0.97661 0.95320 1.00123 1.21496 0.93891 0.96726 0.99170 0.90925 1.22307 1.01288 0.93640 1.02311 0.90675 0.89404 0.91248 0.81616 0.80874 0.87159 0.86017 0.77218 0.96500 0.91950 0.78608 0.93764 0.90707 0.90080 0.91940 0.92392 0.92088 0.92482 0.92248 0.92484 0.90038 0.95345 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.04 36.00 0.36 -0.35 16 2 C 0.21 3.19 7.89 -155.41 -1.23 1.96 16 3 N -0.50 -8.60 11.25 -10.82 -0.12 -8.72 16 4 C -0.04 -0.57 11.87 -17.81 -0.21 -0.79 16 5 C -0.03 -0.56 11.58 -16.56 -0.19 -0.75 16 6 N -0.43 -6.49 2.24 -115.19 -0.26 -6.75 16 7 C 0.08 1.01 6.16 -5.19 -0.03 0.98 16 8 C 0.50 7.44 6.05 -10.98 -0.07 7.37 16 9 O -0.49 -9.19 9.77 5.56 0.05 -9.13 16 10 N -0.71 -9.33 3.53 -47.60 -0.17 -9.50 16 11 C 0.18 2.68 0.32 -131.81 -0.04 2.64 16 12 C 0.13 2.66 4.40 -4.04 -0.02 2.64 16 13 N -0.72 -17.47 5.04 -59.91 -0.30 -17.77 16 14 C -0.22 -6.29 9.99 -15.06 -0.15 -6.44 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 16 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 17 N -0.94 -27.48 13.06 55.49 0.72 -26.76 16 18 Si 0.90 22.72 29.55 -169.99 -5.02 17.69 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C -0.12 -1.61 4.72 -26.73 -0.13 -1.74 16 23 C -0.12 -1.20 5.75 -26.74 -0.15 -1.35 16 24 C -0.12 -1.11 5.92 -26.74 -0.16 -1.27 16 25 C -0.11 -1.12 5.04 -26.74 -0.13 -1.25 16 26 C -0.09 -1.20 2.07 -90.62 -0.19 -1.39 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 28 C -0.14 -2.02 7.30 37.16 0.27 -1.75 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.71 7.66 -51.93 -0.40 0.31 16 32 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 34 H 0.11 0.92 7.92 -51.93 -0.41 0.51 16 35 H 0.12 1.41 8.13 -51.93 -0.42 0.99 16 36 H 0.39 4.20 6.98 -40.82 -0.29 3.92 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 1.40 4.22 -51.93 -0.22 1.19 16 39 H 0.38 9.39 6.58 -40.82 -0.27 9.12 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.30 7.29 -51.93 -0.38 0.92 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.53 6.63 -51.93 -0.34 0.18 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.59 7.60 -51.93 -0.39 0.20 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.08 1.46 5.06 -51.93 -0.26 1.19 16 50 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 0.83 5.32 -51.93 -0.28 0.56 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -34.12 387.44 -9.70 -43.81 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -8.28 Total: 13.30 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.16 Total: -2.02 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -0.13 Total: -69.49 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.05 Total: -9.13 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.12 -9.70 -43.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714185708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.267 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds