Wall clock time and date at job start Tue Mar 31 2020 18:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30496 * 125.65288 * 2 1 4 4 C 1.34124 * 109.25702 * 180.02562 * 3 2 1 5 5 C 1.34666 * 108.02153 * 359.73322 * 4 3 2 6 6 N 1.35044 * 125.64702 * 180.02562 * 2 1 3 7 7 C 1.46507 * 126.39937 * 359.96543 * 6 2 1 8 8 C 1.52997 * 109.46951 * 84.99896 * 7 6 2 9 9 C 1.52999 * 109.46854 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.46967 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00183 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99820 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.63423 * 359.71882 * 12 10 9 14 14 C 1.53624 * 108.54394 * 126.36414 * 13 12 10 15 15 C 1.53045 * 109.24098 * 54.86125 * 14 13 12 16 16 N 1.46493 * 109.46200 * 178.48959 * 15 14 13 17 17 C 1.46505 * 120.00178 * 60.06850 * 16 15 14 18 18 C 1.36933 * 120.00264 * 240.06768 * 16 15 14 19 19 H 1.08005 * 119.99596 * 20.40112 * 18 16 15 20 20 C 1.38805 * 120.00504 * 200.39912 * 18 16 15 21 21 N 1.31620 * 120.00060 * 14.97872 * 20 18 16 22 22 Si 1.86803 * 120.00486 * 194.97688 * 20 18 16 23 23 H 1.48495 * 109.46990 * 85.00189 * 22 20 18 24 24 H 1.48500 * 109.47302 * 205.00670 * 22 20 18 25 25 H 1.48502 * 109.46762 * 325.00122 * 22 20 18 26 26 C 1.53042 * 109.53508 * 298.51245 * 15 14 13 27 27 C 1.46930 * 120.62766 * 179.97438 * 12 10 9 28 28 H 1.09005 * 109.46904 * 269.95794 * 1 2 3 29 29 H 1.09003 * 109.47007 * 29.95694 * 1 2 3 30 30 H 1.08999 * 109.47119 * 149.95701 * 1 2 3 31 31 H 1.08002 * 125.98626 * 180.02562 * 4 3 2 32 32 H 1.08004 * 126.59280 * 180.27882 * 5 4 3 33 33 H 1.08995 * 109.46842 * 324.99625 * 7 6 2 34 34 H 1.08998 * 109.46776 * 205.00113 * 7 6 2 35 35 H 1.09004 * 109.47356 * 60.00134 * 8 7 6 36 36 H 1.08995 * 109.47075 * 300.00302 * 8 7 6 37 37 H 1.08991 * 109.47421 * 59.99966 * 9 8 7 38 38 H 1.09008 * 109.47170 * 299.99835 * 9 8 7 39 39 H 1.08994 * 109.58573 * 246.20460 * 13 12 10 40 40 H 1.09006 * 109.58255 * 6.62860 * 13 12 10 41 41 H 1.09000 * 109.63480 * 294.87313 * 14 13 12 42 42 H 1.08994 * 109.43313 * 174.72398 * 14 13 12 43 43 H 1.08994 * 109.45939 * 58.52780 * 15 14 13 44 44 H 1.08991 * 109.47177 * 95.10659 * 17 16 15 45 45 H 1.09003 * 109.46928 * 215.11665 * 17 16 15 46 46 H 1.09006 * 109.46846 * 335.10814 * 17 16 15 47 47 H 0.97003 * 120.00610 * 180.02562 * 21 20 18 48 48 H 1.09007 * 109.49670 * 301.40949 * 26 15 14 49 49 H 1.09000 * 109.52581 * 181.33363 * 26 15 14 50 50 H 1.08994 * 109.59079 * 353.37976 * 27 12 10 51 51 H 1.09004 * 109.58440 * 113.65805 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0006 5 6 3.5926 -0.6643 0.0050 6 7 2.2940 -1.0974 -0.0005 7 6 1.8424 -2.4911 -0.0004 8 6 1.5649 -2.9373 -1.4373 9 6 1.0927 -4.3926 -1.4371 10 6 0.8199 -4.8324 -2.8525 11 8 0.9864 -4.0579 -3.7709 12 7 0.3911 -6.0863 -3.0977 13 6 0.1906 -7.0379 -1.9963 14 6 -1.2369 -7.5979 -2.0881 15 6 -1.4564 -8.1937 -3.4806 16 7 -2.8044 -8.7614 -3.5617 17 6 -3.9742 -7.9036 -3.3566 18 6 -2.9712 -10.0940 -3.8291 19 1 -2.1588 -10.7849 -3.6580 20 6 -4.1842 -10.5570 -4.3200 21 7 -5.0652 -9.7077 -4.8048 22 14 -4.5664 -12.3853 -4.2927 23 1 -5.1243 -12.7546 -2.9670 24 1 -5.5583 -12.6995 -5.3522 25 1 -3.3203 -13.1551 -4.5373 26 6 -1.3006 -7.0972 -4.5368 27 6 0.1204 -6.5295 -4.4722 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5132 30 1 -0.3633 -0.8896 -0.5145 31 1 4.4098 1.3410 -0.0003 32 1 4.4776 -1.2833 0.0104 33 1 0.9300 -2.5773 0.5895 34 1 2.6167 -3.1238 0.4335 35 1 2.4775 -2.8511 -2.0272 36 1 0.7908 -2.3045 -1.8711 37 1 0.1802 -4.4785 -0.8474 38 1 1.8667 -5.0258 -1.0031 39 1 0.9113 -7.8512 -2.0804 40 1 0.3234 -6.5264 -1.0429 41 1 -1.9563 -6.7968 -1.9177 42 1 -1.3710 -8.3743 -1.3350 43 1 -0.7209 -8.9778 -3.6601 44 1 -4.3451 -7.5582 -4.3215 45 1 -4.7550 -8.4693 -2.8483 46 1 -3.6926 -7.0448 -2.7471 47 1 -5.9131 -10.0311 -5.1475 48 1 -2.0194 -6.3008 -4.3433 49 1 -1.4802 -7.5166 -5.5267 50 1 0.2068 -5.6827 -5.1529 51 1 0.8370 -7.3005 -4.7553 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725425708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:52 Heat of formation + Delta-G solvation = 41.485509 kcal Electronic energy + Delta-G solvation = -28849.267825 eV Core-core repulsion = 24978.164794 eV Total energy + Delta-G solvation = -3871.103031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.33384 -40.19423 -37.72323 -35.83072 -35.12330 -32.73022 -32.09918 -31.96857 -30.80483 -29.79961 -27.64737 -26.89277 -26.05779 -24.87620 -23.29932 -22.65996 -21.79641 -21.60516 -20.03029 -19.77776 -18.55830 -17.49707 -16.97598 -16.77178 -16.23079 -15.73216 -15.68290 -15.07388 -14.99238 -14.34706 -14.09390 -14.01986 -13.88321 -13.57908 -13.39857 -13.34802 -13.14167 -13.06725 -12.72434 -12.57534 -12.52809 -12.41030 -12.19598 -11.93387 -11.74725 -11.52458 -11.28679 -11.00460 -10.91729 -10.82778 -10.44859 -10.29422 -10.21030 -10.18121 -9.91161 -9.88403 -9.77784 -9.62980 -8.62119 -8.57990 -8.52530 -6.83209 -5.76439 -3.20752 1.78173 2.44553 2.59053 2.93055 3.03686 3.34575 3.40773 3.42235 4.17756 4.21880 4.25297 4.41664 4.44048 4.62413 4.76302 4.79517 4.87259 4.97990 5.02604 5.15886 5.17483 5.19683 5.23664 5.31220 5.34779 5.43550 5.48450 5.53356 5.54652 5.62861 5.71493 5.81657 5.83533 5.95343 6.05465 6.08435 6.17883 6.29487 6.46325 6.53044 6.54134 6.72141 6.90724 6.93172 6.94122 7.34118 7.44413 7.68256 7.76423 7.88459 8.15591 8.34268 9.18925 9.83139 10.31378 11.28328 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.027832 B = 0.001949 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.796044 B =14361.111487 C =14617.997211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.207 3.793 3 N -0.496 5.496 4 C -0.030 4.030 5 C -0.059 4.059 6 N -0.454 5.454 7 C 0.102 3.898 8 C -0.119 4.119 9 C -0.138 4.138 10 C 0.513 3.487 11 O -0.549 6.549 12 N -0.606 5.606 13 C 0.109 3.891 14 C -0.148 4.148 15 C 0.179 3.821 16 N -0.596 5.596 17 C 0.164 3.836 18 C -0.256 4.256 19 H 0.069 0.931 20 C 0.000 4.000 21 N -0.906 5.906 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.280 1.280 26 C -0.144 4.144 27 C 0.113 3.887 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.173 0.827 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.028 0.972 45 H 0.041 0.959 46 H -0.003 1.003 47 H 0.252 0.748 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.085 0.915 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.903 12.741 11.974 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.055 4.055 3 N -0.215 5.215 4 C -0.178 4.178 5 C -0.191 4.191 6 N -0.137 5.137 7 C -0.020 4.020 8 C -0.158 4.158 9 C -0.178 4.178 10 C 0.301 3.699 11 O -0.427 6.427 12 N -0.339 5.339 13 C -0.015 4.015 14 C -0.188 4.188 15 C 0.071 3.929 16 N -0.318 5.318 17 C 0.020 3.980 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.198 4.198 21 N -0.551 5.551 22 Si 0.734 3.266 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.185 4.185 27 C -0.010 4.010 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.185 0.815 32 H 0.190 0.810 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.016 0.984 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.094 0.906 50 H 0.103 0.897 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.463 13.746 11.405 22.983 hybrid contribution 0.046 -2.022 -0.057 2.023 sum 14.508 11.724 11.348 21.834 Atomic orbital electron populations 1.20228 0.84982 1.04328 1.03452 1.23333 0.95765 0.81375 1.05065 1.70244 1.02323 1.28409 1.20506 1.22274 0.94792 0.92819 1.07928 1.22701 0.87082 0.96912 1.12452 1.45422 1.06513 1.07347 1.54372 1.21957 1.02044 0.79308 0.98715 1.21694 1.03774 0.95371 0.94933 1.21591 1.03646 0.97041 0.95528 1.20459 0.76910 0.81488 0.91075 1.90698 1.52915 1.52539 1.46529 1.48202 1.65282 1.11708 1.08669 1.21927 0.98446 0.92220 0.88873 1.22563 0.94197 1.00857 1.01181 1.20267 0.88838 0.93142 0.90685 1.43980 0.99255 1.06370 1.82166 1.20739 0.88682 0.90867 0.97756 1.19214 0.98894 0.83048 1.37342 0.91344 1.24971 0.98334 0.97610 0.98875 1.70087 1.08898 1.32739 1.43414 0.86282 0.77859 0.85193 0.77246 1.21519 1.21788 1.20603 1.22499 0.94254 0.99675 1.02041 1.21691 0.97476 0.99642 0.82141 0.90198 0.89118 0.90627 0.81456 0.80995 0.88755 0.88740 0.90314 0.90213 0.88389 0.88633 0.91278 0.90406 0.91902 0.90737 0.91937 0.95364 0.94046 0.98406 0.93740 0.92262 0.90617 0.89700 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.04 36.01 0.36 -0.17 16 2 C 0.21 2.17 7.90 -155.42 -1.23 0.95 16 3 N -0.50 -6.25 11.25 -10.82 -0.12 -6.37 16 4 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 5 C -0.06 -0.52 11.58 -16.56 -0.19 -0.71 16 6 N -0.45 -4.01 2.75 -113.90 -0.31 -4.32 16 7 C 0.10 0.60 5.68 -4.04 -0.02 0.58 16 8 C -0.12 -0.95 4.83 -26.73 -0.13 -1.08 16 9 C -0.14 -1.04 4.05 -27.88 -0.11 -1.15 16 10 C 0.51 6.45 7.70 -10.99 -0.08 6.37 16 11 O -0.55 -9.05 15.40 5.56 0.09 -8.96 16 12 N -0.61 -7.71 2.97 -172.53 -0.51 -8.22 16 13 C 0.11 1.16 6.37 -3.49 -0.02 1.14 16 14 C -0.15 -2.14 5.34 -26.38 -0.14 -2.28 16 15 C 0.18 3.30 2.55 -67.89 -0.17 3.13 16 16 N -0.60 -14.03 2.81 -173.44 -0.49 -14.52 16 17 C 0.16 3.89 8.03 59.85 0.48 4.37 16 18 C -0.26 -6.71 9.61 -15.06 -0.14 -6.85 16 19 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 20 C 0.00 0.01 5.06 -17.43 -0.09 -0.08 16 21 N -0.91 -25.89 10.67 55.49 0.59 -25.30 16 22 Si 0.90 21.30 29.58 -169.99 -5.03 16.27 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.14 -2.50 5.34 -26.63 -0.14 -2.64 16 27 C 0.11 1.64 6.43 -3.73 -0.02 1.61 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.48 7.36 -51.93 -0.38 0.09 16 31 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.17 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.09 0.41 7.92 -51.93 -0.41 0.00 16 34 H 0.09 0.38 8.13 -51.93 -0.42 -0.04 16 35 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.08 0.79 7.63 -51.93 -0.40 0.39 16 37 H 0.10 0.59 7.70 -51.93 -0.40 0.19 16 38 H 0.10 0.51 7.93 -51.92 -0.41 0.10 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.59 5.93 -51.93 -0.31 0.28 16 41 H 0.06 0.96 6.72 -51.93 -0.35 0.61 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.16 7.85 -51.93 -0.41 0.76 16 44 H 0.03 0.74 7.40 -51.93 -0.38 0.35 16 45 H 0.04 1.06 7.22 -51.93 -0.37 0.69 16 46 H 0.00 -0.05 6.47 -51.93 -0.34 -0.39 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.06 1.10 7.72 -51.93 -0.40 0.70 16 49 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 50 H 0.08 1.31 7.01 -51.93 -0.36 0.95 16 51 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 401.28 15.07 6.05 6.05 Total: -1.00 -34.20 401.28 -10.31 -44.51 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.70 Total: -1.79 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.87 Total: 2.65 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.84 Total: -58.74 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.20 -10.31 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725425708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.997 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds