Wall clock time and date at job start Tue Mar 31 2020 20:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47140 * 2 1 4 4 C 1.53001 * 109.47002 * 239.99958 * 2 1 3 5 5 C 1.50703 * 109.47371 * 119.99873 * 2 1 3 6 6 N 1.30448 * 125.98740 * 241.03352 * 5 2 1 7 7 N 1.39941 * 108.89134 * 179.97438 * 6 5 2 8 8 H 0.97001 * 125.74837 * 179.97438 * 7 6 5 9 9 C 1.34257 * 108.49487 * 359.73086 * 7 6 5 10 10 C 1.38038 * 107.41561 * 0.42934 * 9 7 6 11 11 C 1.47426 * 126.41553 * 179.83749 * 10 9 7 12 12 O 1.21606 * 120.00444 * 176.12504 * 11 10 9 13 13 N 1.34775 * 120.00066 * 356.40612 * 11 10 9 14 14 C 1.46504 * 120.00523 * 179.72507 * 13 11 10 15 15 C 1.52996 * 109.47284 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.49630 * 55.00055 * 15 14 13 17 17 C 1.53042 * 109.49373 * 175.06362 * 15 14 13 18 18 C 1.53039 * 109.53629 * 181.31947 * 17 15 14 19 19 C 1.53194 * 109.31289 * 298.63697 * 18 17 15 20 20 N 1.46926 * 108.77794 * 54.63243 * 19 18 17 21 21 C 1.36935 * 120.62761 * 126.38949 * 20 19 18 22 22 H 1.08002 * 119.99826 * 210.41697 * 21 20 19 23 23 C 1.38813 * 120.00178 * 30.41922 * 21 20 19 24 24 N 1.31616 * 119.99834 * 12.07658 * 23 21 20 25 25 Si 1.86801 * 119.99837 * 192.07480 * 23 21 20 26 26 H 1.48497 * 109.47370 * 90.00157 * 25 23 21 27 27 H 1.48502 * 109.46787 * 209.99812 * 25 23 21 28 28 H 1.48502 * 109.47178 * 329.99454 * 25 23 21 29 29 C 1.46930 * 118.76183 * 306.41880 * 20 19 18 30 30 H 1.09005 * 109.46858 * 310.00430 * 1 2 3 31 31 H 1.09001 * 109.47180 * 70.00084 * 1 2 3 32 32 H 1.08999 * 109.46980 * 190.00616 * 1 2 3 33 33 H 1.09003 * 109.46957 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47044 * 299.99737 * 3 2 1 35 35 H 1.08993 * 109.46931 * 60.00298 * 3 2 1 36 36 H 1.08997 * 109.47278 * 291.14534 * 4 2 1 37 37 H 1.08999 * 109.46842 * 51.14847 * 4 2 1 38 38 H 1.09010 * 109.46718 * 171.14606 * 4 2 1 39 39 H 1.07998 * 126.29307 * 180.29865 * 9 7 6 40 40 H 0.97002 * 120.00140 * 359.72095 * 13 11 10 41 41 H 1.08997 * 109.46666 * 299.99953 * 14 13 11 42 42 H 1.09003 * 109.46918 * 59.99460 * 14 13 11 43 43 H 1.08998 * 109.46199 * 301.33302 * 17 15 14 44 44 H 1.08996 * 109.46267 * 61.31346 * 17 15 14 45 45 H 1.09001 * 109.50171 * 58.58455 * 18 17 15 46 46 H 1.09001 * 109.49958 * 178.68343 * 18 17 15 47 47 H 1.09006 * 109.58566 * 174.42398 * 19 18 17 48 48 H 1.09001 * 109.58563 * 294.70148 * 19 18 17 49 49 H 0.96997 * 119.99764 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.56043 * 293.77907 * 29 20 19 51 51 H 1.09004 * 109.61404 * 173.35685 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2305 6 7 2.7698 -0.1867 2.1705 7 7 3.0274 -1.1620 3.1405 8 1 3.5528 -1.0353 3.9459 9 6 2.4203 -2.3010 2.7709 10 6 1.7867 -2.0601 1.5684 11 6 0.9963 -3.0281 0.7863 12 8 0.4278 -2.6709 -0.2276 13 7 0.8992 -4.3078 1.1980 14 6 0.1088 -5.2684 0.4242 15 6 0.1635 -6.6383 1.1033 16 1 -0.1609 -6.5438 2.1396 17 6 -0.7595 -7.6111 0.3658 18 6 -0.7308 -8.9727 1.0639 19 6 0.6944 -9.5331 1.0230 20 7 1.6100 -8.5396 1.6003 21 6 2.4577 -8.8815 2.6199 22 1 2.7494 -8.1417 3.3507 23 6 2.9420 -10.1790 2.7143 24 7 2.7865 -11.0142 1.7091 25 14 3.8146 -10.7394 4.2680 26 1 2.8221 -11.3058 5.2163 27 1 4.8192 -11.7776 3.9243 28 1 4.4963 -9.5805 4.8984 29 6 1.5988 -7.1719 1.0635 30 1 -0.3633 0.6607 0.7872 31 1 -0.3633 0.3515 -0.9657 32 1 -0.3633 -1.0120 0.1786 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.8115 -1.7844 -1.1737 37 1 1.5532 -0.3069 -2.1321 38 1 3.1185 -0.5863 -1.3318 39 1 2.4281 -3.2347 3.3136 40 1 1.3526 -4.5928 2.0068 41 1 -0.9257 -4.9293 0.3721 42 1 0.5168 -5.3463 -0.5836 43 1 -1.7774 -7.2214 0.3719 44 1 -0.4200 -7.7240 -0.6638 45 1 -1.0464 -8.8567 2.1007 46 1 -1.4061 -9.6583 0.5521 47 1 0.7416 -10.4544 1.6036 48 1 0.9773 -9.7372 -0.0097 49 1 3.1246 -11.9209 1.7752 50 1 1.9569 -7.1809 0.0340 51 1 2.2423 -6.5352 1.6707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295766693.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:06 Heat of formation + Delta-G solvation = 20.661146 kcal Electronic energy + Delta-G solvation = -29741.141757 eV Core-core repulsion = 25869.135714 eV Total energy + Delta-G solvation = -3872.006043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.53773 -40.32578 -39.19699 -37.68346 -36.04857 -34.59297 -32.37325 -32.22216 -31.93177 -30.93808 -28.03628 -27.99656 -27.22749 -26.72373 -24.05436 -23.70969 -23.57278 -22.35550 -21.16623 -20.53809 -19.46986 -19.13355 -18.58542 -17.35854 -16.83126 -16.57907 -16.47707 -15.95285 -15.90673 -15.65953 -15.39269 -15.06843 -14.97276 -14.93888 -14.49348 -14.43457 -13.94037 -13.83085 -13.63594 -13.56867 -13.00460 -12.98731 -12.84580 -12.80371 -12.48781 -12.33937 -12.32019 -12.18355 -12.02217 -11.91534 -11.87414 -11.75493 -11.51807 -11.45391 -11.18990 -11.04882 -10.56295 -10.51089 -10.50328 -9.97124 -9.64960 -8.60184 -7.82549 -5.32748 0.58324 1.15588 1.48980 1.50048 1.58366 1.82487 2.39761 2.52311 2.53243 3.33095 3.42267 3.66139 3.71247 4.04937 4.09087 4.09909 4.10178 4.16482 4.17103 4.40025 4.47205 4.51020 4.54899 4.65996 4.71640 4.84518 4.86260 4.87396 4.95966 5.00541 5.01153 5.04978 5.06733 5.13626 5.16438 5.16994 5.22408 5.30894 5.39720 5.45601 5.50612 5.52826 5.58534 5.61857 5.70340 5.79657 5.84193 6.28657 6.44200 6.53455 6.75832 7.19275 7.43803 7.90129 8.43102 9.23169 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.002795 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.722701 B =10015.801595 C =11294.286376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.014 3.986 3 C -0.130 4.130 4 C -0.142 4.142 5 C 0.134 3.866 6 N -0.319 5.319 7 N -0.450 5.450 8 H 0.459 0.541 9 C 0.128 3.872 10 C -0.315 4.315 11 C 0.587 3.413 12 O -0.555 6.555 13 N -0.717 5.717 14 C 0.142 3.858 15 C -0.100 4.100 16 H 0.078 0.922 17 C -0.097 4.097 18 C -0.130 4.130 19 C 0.173 3.827 20 N -0.610 5.610 21 C -0.257 4.257 22 H 0.074 0.926 23 C -0.054 4.054 24 N -0.939 5.939 25 Si 0.967 3.033 26 H -0.287 1.287 27 H -0.301 1.301 28 H -0.263 1.263 29 C 0.154 3.846 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.223 0.777 40 H 0.407 0.593 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.051 0.949 48 H -0.010 1.010 49 H 0.248 0.752 50 H 0.003 0.997 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 20.454 1.639 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 C -0.187 4.187 4 C -0.200 4.200 5 C -0.034 4.034 6 N -0.141 5.141 7 N -0.156 5.156 8 H 0.307 0.693 9 C -0.026 4.026 10 C -0.330 4.330 11 C 0.376 3.624 12 O -0.436 6.436 13 N -0.368 5.368 14 C 0.018 3.982 15 C -0.120 4.120 16 H 0.096 0.904 17 C -0.135 4.135 18 C -0.169 4.169 19 C 0.047 3.953 20 N -0.333 5.333 21 C -0.387 4.387 22 H 0.092 0.908 23 C -0.249 4.249 24 N -0.586 5.586 25 Si 0.796 3.204 26 H -0.214 1.214 27 H -0.228 1.228 28 H -0.188 1.188 29 C 0.028 3.972 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.239 0.761 40 H 0.243 0.757 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.008 0.992 49 H 0.057 0.943 50 H 0.021 0.979 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.964 21.606 1.348 22.008 hybrid contribution 0.890 -1.809 1.098 2.296 sum -3.074 19.797 2.446 20.183 Atomic orbital electron populations 1.22011 0.92738 1.03551 1.01557 1.19019 0.96230 0.94500 0.89036 1.21768 1.00790 0.93973 1.02190 1.22011 0.99550 1.02609 0.95833 1.22598 0.93640 0.91854 0.95326 1.77102 1.22136 1.13870 1.00976 1.46172 1.41004 1.07349 1.21041 0.69280 1.23707 0.91176 0.93203 0.94557 1.20317 1.15410 0.96195 1.01069 1.17392 0.79640 0.81424 0.83962 1.90623 1.48204 1.78345 1.26468 1.45803 1.52781 1.08790 1.29415 1.21211 0.95670 0.86778 0.94532 1.21707 0.97072 0.93023 1.00188 0.90375 1.21333 0.99370 0.94350 0.98489 1.22004 0.97489 0.97302 1.00136 1.20620 0.87449 0.92676 0.94533 1.44284 1.41974 1.06978 1.40033 1.19571 1.20698 0.95841 1.02612 0.90839 1.25907 1.00265 0.98690 1.00052 1.70168 1.50951 1.06088 1.31382 0.85268 0.77783 0.77862 0.79527 1.21373 1.22773 1.18765 1.21029 0.94676 0.85885 0.95608 0.93538 0.91641 0.90749 0.92998 0.91037 0.92720 0.91138 0.91490 0.93785 0.76077 0.75725 0.90914 0.92627 0.90223 0.92847 0.92818 0.91578 0.93067 0.99206 0.94334 0.97908 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.20 71.98 0.59 -2.60 16 2 C 0.01 0.33 0.75 -52.93 -0.04 0.29 16 3 C -0.13 -2.51 7.93 71.98 0.57 -1.94 16 4 C -0.14 -3.38 8.19 71.98 0.59 -2.79 16 5 C 0.13 3.21 5.64 43.52 0.25 3.45 16 6 N -0.32 -7.09 11.93 -46.67 -0.56 -7.65 16 7 N -0.45 -6.72 7.29 -56.32 -0.41 -7.13 16 8 H 0.46 3.46 8.96 -213.42 -1.91 1.55 16 9 C 0.13 1.93 11.52 84.27 0.97 2.90 16 10 C -0.31 -7.06 5.88 -20.15 -0.12 -7.18 16 11 C 0.59 14.89 7.20 86.66 0.62 15.51 16 12 O -0.56 -16.64 10.41 -4.05 -0.04 -16.69 16 13 N -0.72 -16.22 5.32 -466.37 -2.48 -18.70 16 14 C 0.14 3.56 5.07 86.38 0.44 4.00 16 15 C -0.10 -2.86 2.37 -10.72 -0.03 -2.88 16 16 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 17 C -0.10 -2.85 5.17 30.62 0.16 -2.69 16 18 C -0.13 -4.59 6.08 30.67 0.19 -4.41 16 19 C 0.17 8.13 5.27 86.36 0.45 8.59 16 20 N -0.61 -28.88 2.99 -699.09 -2.09 -30.97 16 21 C -0.26 -13.29 9.58 84.03 0.81 -12.49 16 22 H 0.07 3.57 7.86 -2.91 -0.02 3.55 16 23 C -0.05 -2.93 5.02 84.86 0.43 -2.50 16 24 N -0.94 -54.82 11.06 21.65 0.24 -54.58 16 25 Si 0.97 43.16 29.57 68.60 2.03 45.18 16 26 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 29 C 0.15 5.73 5.60 86.36 0.48 6.21 16 30 H 0.05 0.98 8.11 -2.38 -0.02 0.96 16 31 H 0.06 1.34 8.04 -2.39 -0.02 1.32 16 32 H 0.07 2.00 4.72 -2.39 -0.01 1.99 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 2.00 4.67 -2.39 -0.01 1.99 16 37 H 0.07 1.42 8.05 -2.39 -0.02 1.40 16 38 H 0.04 1.00 8.13 -2.38 -0.02 0.98 16 39 H 0.22 1.56 7.47 -2.91 -0.02 1.54 16 40 H 0.41 7.63 6.64 -92.71 -0.62 7.02 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.05 2.76 6.07 -2.38 -0.01 2.75 16 48 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 49 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 50 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 51 H 0.06 2.06 7.14 -2.39 -0.02 2.05 16 Total: -1.00 -69.73 391.22 1.46 -68.27 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -1.59 Total: 20.79 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 6.36 Total: 1.48 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -5.30 Total: -119.04 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.04 Total: -16.69 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -69.73 1.46 -68.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295766693.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.934 kcal (2) G-P(sol) polarization free energy of solvation -69.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds