Wall clock time and date at job start Tue Mar 31 2020 19:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47190 * 2 1 4 4 C 1.50706 * 109.47303 * 120.00232 * 2 1 3 5 5 C 1.35415 * 126.39840 * 324.68659 * 4 2 1 6 6 C 1.41422 * 105.49924 * 179.89816 * 5 4 2 7 7 C 1.47913 * 126.50409 * 180.13653 * 6 5 4 8 8 O 1.35243 * 119.99623 * 180.30265 * 7 6 5 9 9 N 1.30042 * 120.00423 * 0.30388 * 7 6 5 10 10 C 1.46498 * 120.00146 * 187.03167 * 9 7 6 11 11 C 1.53000 * 109.46567 * 246.15497 * 10 9 7 12 12 C 1.53038 * 109.46191 * 295.06312 * 11 10 9 13 13 C 1.53192 * 109.31675 * 178.61523 * 12 11 10 14 14 N 1.46923 * 108.77305 * 54.63649 * 13 12 11 15 15 C 1.36941 * 120.62803 * 126.41175 * 14 13 12 16 16 H 1.07996 * 120.00523 * 325.13121 * 15 14 13 17 17 C 1.38822 * 119.99588 * 145.12656 * 15 14 13 18 18 N 1.31617 * 119.99956 * 340.42330 * 17 15 14 19 19 Si 1.86793 * 119.99623 * 160.42466 * 17 15 14 20 20 H 1.48501 * 109.47469 * 60.00341 * 19 17 15 21 21 H 1.48503 * 109.46882 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47361 * 299.99877 * 19 17 15 23 23 C 1.46923 * 118.74187 * 306.39271 * 14 13 12 24 24 C 1.53045 * 109.46308 * 174.99704 * 11 10 9 25 25 N 1.31707 * 106.98386 * 0.37170 * 6 5 4 26 26 N 1.28471 * 110.09964 * 359.76738 * 25 6 5 27 27 C 1.46500 * 124.89290 * 179.97438 * 26 25 6 28 28 H 1.09000 * 109.46933 * 299.99663 * 1 2 3 29 29 H 1.08995 * 109.46928 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47325 * 59.99535 * 1 2 3 31 31 H 1.09001 * 109.47430 * 240.00162 * 2 1 3 32 32 H 1.09000 * 109.46908 * 60.00321 * 3 2 1 33 33 H 1.08998 * 109.47053 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47366 * 300.00439 * 3 2 1 35 35 H 1.08001 * 127.24887 * 0.02562 * 5 4 2 36 36 H 0.96709 * 114.00047 * 185.57981 * 8 7 6 37 37 H 1.09004 * 109.47235 * 6.14838 * 10 9 7 38 38 H 1.08990 * 109.47723 * 126.15520 * 10 9 7 39 39 H 1.09003 * 109.46404 * 55.02191 * 11 10 9 40 40 H 1.09000 * 109.49949 * 298.56909 * 12 11 10 41 41 H 1.09006 * 109.49459 * 58.66072 * 12 11 10 42 42 H 1.08999 * 109.58829 * 294.84989 * 13 12 11 43 43 H 1.08997 * 109.70505 * 174.49480 * 13 12 11 44 44 H 0.96998 * 119.99398 * 179.97438 * 18 17 15 45 45 H 1.09005 * 109.58347 * 293.82310 * 23 14 13 46 46 H 1.08997 * 109.70730 * 173.46406 * 23 14 13 47 47 H 1.09004 * 109.49499 * 301.33822 * 24 11 10 48 48 H 1.09001 * 109.49169 * 61.42856 * 24 11 10 49 49 H 1.08998 * 109.46579 * 270.02268 * 27 26 25 50 50 H 1.08997 * 109.46893 * 30.02325 * 27 26 25 51 51 H 1.09003 * 109.47002 * 150.02271 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.4617 -0.6919 2.4584 6 6 2.2889 -1.5006 3.2718 7 6 2.0893 -1.8006 4.7064 8 8 2.9707 -2.5902 5.3611 9 7 1.0662 -1.3052 5.3381 10 6 0.9496 -1.4730 6.7887 11 6 -0.2534 -2.3642 7.1039 12 6 -1.5396 -1.6561 6.6719 13 6 -2.7389 -2.5655 6.9572 14 7 -2.7110 -2.9547 8.3736 15 6 -3.8044 -2.7554 9.1736 16 1 -4.4320 -1.8893 9.0245 17 6 -4.1061 -3.6670 10.1763 18 7 -3.6092 -4.8848 10.1297 19 14 -5.2173 -3.1649 11.5913 20 1 -6.5447 -2.7636 11.0601 21 1 -5.3827 -4.3108 12.5213 22 1 -4.6084 -2.0215 12.3173 23 6 -1.4877 -3.5620 8.9154 24 6 -0.3024 -2.6416 8.6082 25 7 3.2736 -1.9317 2.5107 26 7 3.1386 -1.4794 1.3159 27 6 4.0537 -1.7576 0.2061 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 0.5629 -0.1711 2.7537 36 1 2.7128 -2.7987 6.2695 37 1 1.8570 -1.9375 7.1749 38 1 0.8126 -0.4986 7.2574 39 1 -0.1589 -3.3063 6.5638 40 1 -1.6476 -0.7258 7.2296 41 1 -1.4940 -1.4379 5.6049 42 1 -2.6788 -3.4564 6.3321 43 1 -3.6645 -2.0309 6.7433 44 1 -3.8197 -5.5215 10.8305 45 1 -1.3255 -4.5343 8.4500 46 1 -1.5850 -3.6849 9.9940 47 1 0.6238 -3.1249 8.9193 48 1 -0.4220 -1.7020 9.1476 49 1 4.8362 -0.9992 0.1818 50 1 4.5043 -2.7404 0.3444 51 1 3.5013 -1.7401 -0.7334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330923955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:57 Heat of formation + Delta-G solvation = 64.640232 kcal Electronic energy + Delta-G solvation = -28856.067538 eV Core-core repulsion = 24985.968571 eV Total energy + Delta-G solvation = -3870.098967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.85617 -39.36244 -37.49887 -36.09750 -34.39362 -33.90215 -32.50656 -30.71969 -29.83876 -29.72168 -28.25391 -27.53719 -26.38857 -24.35969 -23.38496 -22.44823 -21.98482 -20.98046 -20.10652 -19.67751 -19.01928 -17.38656 -17.25089 -16.66215 -16.47597 -15.92482 -14.88558 -14.81498 -14.54512 -14.29138 -14.02827 -13.94570 -13.64580 -13.49436 -13.46512 -13.22279 -13.05553 -12.97485 -12.83283 -12.57851 -12.50561 -12.12059 -11.96291 -11.73755 -11.59829 -11.24567 -11.18144 -10.96422 -10.81626 -10.66790 -10.58274 -10.23286 -10.13669 -9.95744 -9.82602 -9.65312 -9.37532 -9.20032 -9.04151 -8.51061 -8.39346 -6.49889 -5.73685 -3.20346 1.42017 1.94254 2.22433 3.20079 3.39437 3.41807 3.47216 3.49278 3.94414 4.14091 4.41136 4.44191 4.55236 4.63860 4.75266 4.89486 5.00965 5.06024 5.18639 5.27521 5.32401 5.38062 5.40268 5.47701 5.49856 5.50632 5.65115 5.67194 5.70950 5.83825 5.86600 5.88370 5.98563 6.13102 6.22808 6.27687 6.35705 6.46809 6.60317 6.63211 6.65949 6.73774 6.86157 6.90000 6.99331 7.15924 7.35360 7.60537 7.82424 7.88526 8.24471 8.56138 9.28260 9.91183 10.54054 11.33837 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.002187 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.434961 B =12802.676267 C =13620.602328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.022 4.022 3 C -0.144 4.144 4 C 0.012 3.988 5 C -0.169 4.169 6 C 0.080 3.920 7 C 0.415 3.585 8 O -0.516 6.516 9 N -0.552 5.552 10 C 0.049 3.951 11 C -0.072 4.072 12 C -0.116 4.116 13 C 0.144 3.856 14 N -0.590 5.590 15 C -0.258 4.258 16 H 0.060 0.940 17 C 0.009 3.991 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.177 3.823 24 C -0.136 4.136 25 N -0.261 5.261 26 N -0.287 5.287 27 C 0.087 3.913 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.165 0.835 36 H 0.400 0.600 37 H 0.031 0.969 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.013 0.987 43 H 0.052 0.948 44 H 0.254 0.746 45 H 0.018 0.982 46 H 0.070 0.930 47 H 0.045 0.955 48 H 0.057 0.943 49 H 0.083 0.917 50 H 0.096 0.904 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.153 9.925 -22.337 29.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 C -0.202 4.202 4 C -0.112 4.112 5 C -0.197 4.197 6 C -0.078 4.078 7 C 0.189 3.811 8 O -0.313 6.313 9 N -0.291 5.291 10 C -0.079 4.079 11 C -0.091 4.091 12 C -0.156 4.156 13 C 0.018 3.982 14 N -0.313 5.313 15 C -0.388 4.388 16 H 0.078 0.922 17 C -0.191 4.191 18 N -0.539 5.539 19 Si 0.728 3.272 20 H -0.208 1.208 21 H -0.217 1.217 22 H -0.210 1.210 23 C 0.051 3.949 24 C -0.176 4.176 25 N -0.095 5.095 26 N -0.074 5.074 27 C -0.053 4.053 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.182 0.818 36 H 0.258 0.742 37 H 0.049 0.951 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.036 0.964 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.115 0.885 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.862 9.466 -22.889 29.964 hybrid contribution -0.748 -0.080 1.864 2.010 sum 16.114 9.385 -21.025 28.103 Atomic orbital electron populations 1.21836 0.92845 1.02781 1.02757 1.19662 0.96934 0.95319 0.92319 1.21852 1.00894 0.94656 1.02778 1.21378 0.91088 1.00513 0.98175 1.21430 1.03108 1.04590 0.90619 1.19066 0.95721 1.02998 0.90020 1.20883 0.83611 0.87405 0.89156 1.84853 1.49419 1.65543 1.31528 1.72602 1.19115 1.27271 1.10162 1.22287 0.97631 1.01533 0.86479 1.21096 0.93782 0.97185 0.97044 1.21915 0.94848 0.98874 0.99926 1.20948 0.95380 0.95081 0.86774 1.43963 1.10825 1.72374 1.04139 1.19049 1.04800 1.03459 1.11496 0.92189 1.25186 0.98466 0.94316 1.01129 1.70073 1.47734 1.02883 1.33254 0.86451 0.80708 0.77474 0.82606 1.20779 1.21711 1.20956 1.20594 0.83328 0.91889 0.99081 1.22247 0.99769 1.01459 0.94140 1.73610 1.23710 1.20855 0.91284 1.45242 1.19435 1.35016 1.07705 1.22109 0.92889 1.04207 0.86109 0.91474 0.92049 0.91834 0.90359 0.91695 0.92856 0.91740 0.81782 0.74212 0.95124 0.89067 0.92258 0.92688 0.92167 0.96912 0.92970 0.93665 0.96428 0.91139 0.93601 0.92397 0.89873 0.88548 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.79 37.16 0.33 -0.56 16 2 C -0.02 -0.14 3.10 -91.77 -0.28 -0.42 16 3 C -0.14 -0.77 9.18 37.16 0.34 -0.43 16 4 C 0.01 0.12 5.84 -82.21 -0.48 -0.36 16 5 C -0.17 -2.03 9.93 -39.38 -0.39 -2.43 16 6 C 0.08 1.15 7.17 -82.75 -0.59 0.55 16 7 C 0.42 6.22 7.99 -14.35 -0.11 6.10 16 8 O -0.52 -7.31 13.53 -17.42 -0.24 -7.55 16 9 N -0.55 -8.41 9.74 -59.24 -0.58 -8.99 16 10 C 0.05 0.72 5.53 -4.04 -0.02 0.70 16 11 C -0.07 -1.26 2.36 -90.58 -0.21 -1.47 16 12 C -0.12 -2.19 5.26 -26.61 -0.14 -2.33 16 13 C 0.14 3.24 6.52 -3.71 -0.02 3.21 16 14 N -0.59 -15.33 2.95 -172.33 -0.51 -15.84 16 15 C -0.26 -7.31 9.48 -15.05 -0.14 -7.45 16 16 H 0.06 1.68 7.90 -52.49 -0.41 1.26 16 17 C 0.01 0.25 4.80 -17.43 -0.08 0.17 16 18 N -0.90 -26.74 11.90 55.49 0.66 -26.08 16 19 Si 0.90 22.05 29.60 -169.99 -5.03 17.01 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C 0.18 4.30 5.30 -3.72 -0.02 4.28 16 24 C -0.14 -2.59 5.36 -26.61 -0.14 -2.73 16 25 N -0.26 -3.56 11.98 33.44 0.40 -3.16 16 26 N -0.29 -2.88 3.70 -63.85 -0.24 -3.11 16 27 C 0.09 0.44 11.11 59.85 0.66 1.11 16 28 H 0.07 0.45 7.36 -51.93 -0.38 0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.35 6.86 -51.93 -0.36 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.16 1.88 7.48 -52.49 -0.39 1.49 16 36 H 0.40 4.56 6.02 45.56 0.27 4.83 16 37 H 0.03 0.38 5.55 -51.93 -0.29 0.10 16 38 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 1.16 7.93 -51.93 -0.41 0.74 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 1.88 6.68 -51.93 -0.35 1.53 16 47 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 49 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.09 0.24 6.88 -51.93 -0.36 -0.12 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -34.31 405.08 -8.87 -43.19 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -8.13 Total: 0.49 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.32 Total: -2.06 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.26 Total: -57.18 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.24 Total: -7.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.31 -8.87 -43.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330923955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.826 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds