Wall clock time and date at job start Tue Mar 31 2020 19:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47190 * 2 1 4 4 C 1.50706 * 109.47303 * 120.00232 * 2 1 3 5 5 C 1.35415 * 126.39840 * 324.68659 * 4 2 1 6 6 C 1.41422 * 105.49924 * 179.89816 * 5 4 2 7 7 C 1.47913 * 126.50409 * 180.13653 * 6 5 4 8 8 O 1.35243 * 119.99623 * 180.30265 * 7 6 5 9 9 N 1.30042 * 120.00423 * 0.30388 * 7 6 5 10 10 C 1.46498 * 120.00146 * 187.03167 * 9 7 6 11 11 C 1.53000 * 109.46567 * 246.15497 * 10 9 7 12 12 C 1.53038 * 109.46191 * 295.06312 * 11 10 9 13 13 C 1.53192 * 109.31675 * 178.61523 * 12 11 10 14 14 N 1.46923 * 108.77305 * 54.63649 * 13 12 11 15 15 C 1.36941 * 120.62803 * 126.41175 * 14 13 12 16 16 H 1.07996 * 120.00523 * 325.13121 * 15 14 13 17 17 C 1.38822 * 119.99588 * 145.12656 * 15 14 13 18 18 N 1.31617 * 119.99956 * 340.42330 * 17 15 14 19 19 Si 1.86793 * 119.99623 * 160.42466 * 17 15 14 20 20 H 1.48501 * 109.47469 * 60.00341 * 19 17 15 21 21 H 1.48503 * 109.46882 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47361 * 299.99877 * 19 17 15 23 23 C 1.46923 * 118.74187 * 306.39271 * 14 13 12 24 24 C 1.53045 * 109.46308 * 174.99704 * 11 10 9 25 25 N 1.31707 * 106.98386 * 0.37170 * 6 5 4 26 26 N 1.28471 * 110.09964 * 359.76738 * 25 6 5 27 27 C 1.46500 * 124.89290 * 179.97438 * 26 25 6 28 28 H 1.09000 * 109.46933 * 299.99663 * 1 2 3 29 29 H 1.08995 * 109.46928 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47325 * 59.99535 * 1 2 3 31 31 H 1.09001 * 109.47430 * 240.00162 * 2 1 3 32 32 H 1.09000 * 109.46908 * 60.00321 * 3 2 1 33 33 H 1.08998 * 109.47053 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47366 * 300.00439 * 3 2 1 35 35 H 1.08001 * 127.24887 * 0.02562 * 5 4 2 36 36 H 0.96709 * 114.00047 * 185.57981 * 8 7 6 37 37 H 1.09004 * 109.47235 * 6.14838 * 10 9 7 38 38 H 1.08990 * 109.47723 * 126.15520 * 10 9 7 39 39 H 1.09003 * 109.46404 * 55.02191 * 11 10 9 40 40 H 1.09000 * 109.49949 * 298.56909 * 12 11 10 41 41 H 1.09006 * 109.49459 * 58.66072 * 12 11 10 42 42 H 1.08999 * 109.58829 * 294.84989 * 13 12 11 43 43 H 1.08997 * 109.70505 * 174.49480 * 13 12 11 44 44 H 0.96998 * 119.99398 * 179.97438 * 18 17 15 45 45 H 1.09005 * 109.58347 * 293.82310 * 23 14 13 46 46 H 1.08997 * 109.70730 * 173.46406 * 23 14 13 47 47 H 1.09004 * 109.49499 * 301.33822 * 24 11 10 48 48 H 1.09001 * 109.49169 * 61.42856 * 24 11 10 49 49 H 1.08998 * 109.46579 * 270.02268 * 27 26 25 50 50 H 1.08997 * 109.46893 * 30.02325 * 27 26 25 51 51 H 1.09003 * 109.47002 * 150.02271 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.4617 -0.6919 2.4584 6 6 2.2889 -1.5006 3.2718 7 6 2.0893 -1.8006 4.7064 8 8 2.9707 -2.5902 5.3611 9 7 1.0662 -1.3052 5.3381 10 6 0.9496 -1.4730 6.7887 11 6 -0.2534 -2.3642 7.1039 12 6 -1.5396 -1.6561 6.6719 13 6 -2.7389 -2.5655 6.9572 14 7 -2.7110 -2.9547 8.3736 15 6 -3.8044 -2.7554 9.1736 16 1 -4.4320 -1.8893 9.0245 17 6 -4.1061 -3.6670 10.1763 18 7 -3.6092 -4.8848 10.1297 19 14 -5.2173 -3.1649 11.5913 20 1 -6.5447 -2.7636 11.0601 21 1 -5.3827 -4.3108 12.5213 22 1 -4.6084 -2.0215 12.3173 23 6 -1.4877 -3.5620 8.9154 24 6 -0.3024 -2.6416 8.6082 25 7 3.2736 -1.9317 2.5107 26 7 3.1386 -1.4794 1.3159 27 6 4.0537 -1.7576 0.2061 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 0.5629 -0.1711 2.7537 36 1 2.7128 -2.7987 6.2695 37 1 1.8570 -1.9375 7.1749 38 1 0.8126 -0.4986 7.2574 39 1 -0.1589 -3.3063 6.5638 40 1 -1.6476 -0.7258 7.2296 41 1 -1.4940 -1.4379 5.6049 42 1 -2.6788 -3.4564 6.3321 43 1 -3.6645 -2.0309 6.7433 44 1 -3.8197 -5.5215 10.8305 45 1 -1.3255 -4.5343 8.4500 46 1 -1.5850 -3.6849 9.9940 47 1 0.6238 -3.1249 8.9193 48 1 -0.4220 -1.7020 9.1476 49 1 4.8362 -0.9992 0.1818 50 1 4.5043 -2.7404 0.3444 51 1 3.5013 -1.7401 -0.7334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330923955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:55 Heat of formation + Delta-G solvation = 40.073432 kcal Electronic energy + Delta-G solvation = -28857.132834 eV Core-core repulsion = 24985.968571 eV Total energy + Delta-G solvation = -3871.164263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.66950 -40.53557 -39.13886 -36.64686 -35.93071 -34.80921 -34.00381 -32.47263 -31.48354 -30.59803 -29.39261 -27.97322 -27.65592 -25.92169 -24.38781 -23.81505 -23.38842 -22.30706 -21.17412 -20.71791 -20.43883 -18.69137 -18.40532 -18.02570 -17.22658 -16.88523 -16.81630 -15.96677 -15.49554 -15.44726 -15.34978 -15.17352 -14.83787 -14.71857 -14.60659 -14.46694 -14.20082 -13.93074 -13.71860 -13.56064 -13.39940 -13.33142 -12.99135 -12.94599 -12.75361 -12.56274 -12.52370 -12.39276 -12.07117 -12.03948 -11.90684 -11.77512 -11.70799 -11.64828 -11.26306 -11.18104 -10.76488 -10.55933 -10.45599 -9.85709 -9.53968 -8.61012 -7.89069 -5.40709 0.41023 1.14300 1.45532 1.48091 1.55440 1.56219 2.16701 2.44561 2.50381 2.96772 3.23466 3.55203 3.71079 3.79433 3.81912 3.98158 4.06240 4.12486 4.22819 4.35804 4.39185 4.46208 4.52290 4.53592 4.58906 4.64240 4.67886 4.74929 4.76221 4.79483 4.88272 4.91901 4.98973 5.03356 5.04957 5.08937 5.20886 5.25864 5.29732 5.32104 5.38228 5.41447 5.43922 5.46329 5.49738 5.65402 5.67281 5.72396 5.92764 6.41044 6.93702 7.14523 7.19531 7.83681 8.41579 9.15780 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.002187 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.434961 B =12802.676267 C =13620.602328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.027 3.973 5 C -0.189 4.189 6 C 0.045 3.955 7 C 0.417 3.583 8 O -0.521 6.521 9 N -0.569 5.569 10 C 0.057 3.943 11 C -0.063 4.063 12 C -0.101 4.101 13 C 0.141 3.859 14 N -0.608 5.608 15 C -0.273 4.273 16 H 0.060 0.940 17 C -0.043 4.043 18 N -0.931 5.931 19 Si 0.967 3.033 20 H -0.274 1.274 21 H -0.293 1.293 22 H -0.276 1.276 23 C 0.182 3.818 24 C -0.122 4.122 25 N -0.288 5.288 26 N -0.280 5.280 27 C 0.073 3.927 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.161 0.839 36 H 0.409 0.591 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.000 1.000 43 H 0.049 0.951 44 H 0.251 0.749 45 H -0.008 1.008 46 H 0.040 0.960 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.102 0.898 50 H 0.098 0.902 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.387 11.570 -24.226 31.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 C -0.199 4.199 4 C -0.098 4.098 5 C -0.218 4.218 6 C -0.111 4.111 7 C 0.192 3.808 8 O -0.320 6.320 9 N -0.309 5.309 10 C -0.072 4.072 11 C -0.082 4.082 12 C -0.140 4.140 13 C 0.016 3.984 14 N -0.332 5.332 15 C -0.403 4.403 16 H 0.077 0.923 17 C -0.240 4.240 18 N -0.576 5.576 19 Si 0.794 3.206 20 H -0.199 1.199 21 H -0.219 1.219 22 H -0.201 1.201 23 C 0.056 3.944 24 C -0.161 4.161 25 N -0.123 5.123 26 N -0.068 5.068 27 C -0.065 4.065 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.179 0.821 36 H 0.269 0.731 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.018 0.982 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.010 0.990 46 H 0.058 0.942 47 H 0.093 0.907 48 H 0.078 0.922 49 H 0.120 0.880 50 H 0.117 0.883 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 18.118 11.123 -24.792 32.659 hybrid contribution -1.099 -0.626 2.287 2.613 sum 17.019 10.497 -22.505 30.105 Atomic orbital electron populations 1.21846 0.92960 1.02258 1.03213 1.19826 0.96753 0.95730 0.91546 1.21835 1.01097 0.93902 1.03066 1.21855 0.90175 0.99255 0.98543 1.21526 1.03444 1.05219 0.91589 1.19275 0.97036 1.04665 0.90154 1.21152 0.83332 0.86669 0.89676 1.84853 1.49459 1.65396 1.32298 1.72625 1.19708 1.28371 1.10229 1.22112 0.97071 1.01206 0.86771 1.20948 0.94573 0.97175 0.95553 1.21728 0.93820 0.97843 1.00627 1.21060 0.97196 0.95218 0.84930 1.44254 1.11006 1.72533 1.05405 1.19373 1.05448 1.03373 1.12109 0.92253 1.25987 1.00319 0.94178 1.03503 1.70217 1.49477 1.03914 1.33947 0.85368 0.79036 0.77010 0.79186 1.19907 1.21873 1.20145 1.20467 0.85015 0.92116 0.96824 1.22038 0.98414 1.00293 0.95382 1.73537 1.24067 1.21948 0.92736 1.45721 1.19793 1.33747 1.07524 1.22587 0.93237 1.05052 0.85660 0.92617 0.93057 0.89833 0.87675 0.93139 0.92508 0.89762 0.82120 0.73138 0.92608 0.88591 0.93484 0.92685 0.90991 0.98167 0.93237 0.93999 0.98950 0.94183 0.90708 0.92225 0.87995 0.88289 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 8.79 71.98 0.63 -0.89 16 2 C -0.02 -0.18 3.10 -11.54 -0.04 -0.22 16 3 C -0.14 -1.14 9.18 71.98 0.66 -0.48 16 4 C 0.03 0.47 5.84 41.42 0.24 0.72 16 5 C -0.19 -4.52 9.93 22.40 0.22 -4.29 16 6 C 0.05 1.29 7.17 42.51 0.30 1.60 16 7 C 0.42 12.34 7.99 87.52 0.70 13.04 16 8 O -0.52 -14.41 13.53 -85.26 -1.15 -15.56 16 9 N -0.57 -16.95 9.74 -455.54 -4.44 -21.38 16 10 C 0.06 1.58 5.53 86.38 0.48 2.06 16 11 C -0.06 -2.16 2.36 -10.77 -0.03 -2.19 16 12 C -0.10 -3.77 5.26 30.67 0.16 -3.61 16 13 C 0.14 6.47 6.52 86.36 0.56 7.03 16 14 N -0.61 -32.37 2.95 -699.12 -2.06 -34.42 16 15 C -0.27 -15.72 9.48 84.04 0.80 -14.92 16 16 H 0.06 3.36 7.90 -2.91 -0.02 3.34 16 17 C -0.04 -2.50 4.80 84.86 0.41 -2.10 16 18 N -0.93 -57.10 11.90 21.65 0.26 -56.84 16 19 Si 0.97 45.91 29.60 68.60 2.03 47.94 16 20 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 C 0.18 9.05 5.30 86.36 0.46 9.51 16 24 C -0.12 -4.54 5.36 30.67 0.16 -4.38 16 25 N -0.29 -7.67 11.98 -48.13 -0.58 -8.25 16 26 N -0.28 -5.16 3.70 -355.91 -1.32 -6.47 16 27 C 0.07 0.53 11.11 127.77 1.42 1.95 16 28 H 0.05 0.71 7.36 -2.39 -0.02 0.69 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.11 0.49 6.86 -2.39 -0.02 0.47 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.16 3.77 7.48 -2.91 -0.02 3.75 16 36 H 0.41 8.78 6.02 -74.05 -0.45 8.34 16 37 H 0.06 1.27 5.55 -2.38 -0.01 1.25 16 38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.52 7.72 -2.38 -0.02 2.51 16 42 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.05 2.24 7.93 -2.39 -0.02 2.22 16 44 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 45 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 46 H 0.04 2.20 6.68 -2.39 -0.02 2.19 16 47 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 48 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.12 0.12 6.88 -2.39 -0.02 0.11 16 Total: -1.00 -76.55 405.08 0.37 -76.19 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.47 Total: 15.98 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 7.15 Total: 2.83 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -8.13 Total: -127.37 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -1.15 Total: -15.56 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -76.55 0.37 -76.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330923955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.259 kcal (2) G-P(sol) polarization free energy of solvation -76.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds