Wall clock time and date at job start Tue Mar 31 2020 20:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47013 * 2 1 4 4 C 1.53000 * 109.47504 * 239.99656 * 2 1 3 5 5 C 1.50706 * 109.46991 * 119.99531 * 2 1 3 6 6 N 1.30443 * 125.98850 * 237.28470 * 5 2 1 7 7 N 1.39932 * 108.89505 * 180.02562 * 6 5 2 8 8 H 0.97003 * 125.74995 * 180.02562 * 7 6 5 9 9 C 1.34253 * 108.49564 * 359.75015 * 7 6 5 10 10 C 1.38044 * 107.41578 * 0.39648 * 9 7 6 11 11 C 1.47435 * 126.41907 * 179.87543 * 10 9 7 12 12 O 1.21604 * 119.99803 * 185.70586 * 11 10 9 13 13 N 1.34772 * 119.99523 * 5.70038 * 11 10 9 14 14 C 1.46502 * 120.00086 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47518 * 180.02562 * 14 13 11 16 16 C 1.53350 * 109.41771 * 295.12632 * 15 14 13 17 17 C 1.53189 * 109.15139 * 178.67597 * 16 15 14 18 18 N 1.46927 * 108.89230 * 54.57700 * 17 16 15 19 19 C 1.36932 * 120.63017 * 126.34541 * 18 17 16 20 20 H 1.08002 * 120.00560 * 328.27069 * 19 18 17 21 21 C 1.38820 * 120.00102 * 148.27134 * 19 18 17 22 22 N 1.31617 * 119.99731 * 344.30771 * 21 19 18 23 23 Si 1.86798 * 120.00179 * 164.31202 * 21 19 18 24 24 H 1.48501 * 109.47046 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47056 * 119.99737 * 23 21 19 26 26 H 1.48494 * 109.47142 * 240.00028 * 23 21 19 27 27 C 1.46929 * 118.73945 * 306.32093 * 18 17 16 28 28 C 1.53036 * 109.46154 * 175.00034 * 15 14 13 29 29 H 1.08994 * 109.47817 * 311.41468 * 1 2 3 30 30 H 1.09002 * 109.47101 * 71.41808 * 1 2 3 31 31 H 1.09000 * 109.46910 * 191.41178 * 1 2 3 32 32 H 1.09001 * 109.47275 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47114 * 299.99766 * 3 2 1 34 34 H 1.09001 * 109.47020 * 59.99476 * 3 2 1 35 35 H 1.08996 * 109.46946 * 305.62496 * 4 2 1 36 36 H 1.09001 * 109.46559 * 65.61899 * 4 2 1 37 37 H 1.09000 * 109.46952 * 185.61983 * 4 2 1 38 38 H 1.08000 * 126.29365 * 180.24271 * 9 7 6 39 39 H 0.96999 * 120.00262 * 0.02562 * 13 11 10 40 40 H 1.09005 * 109.47258 * 59.99528 * 14 13 11 41 41 H 1.09002 * 109.46626 * 300.00030 * 14 13 11 42 42 H 1.09002 * 109.46023 * 55.02213 * 15 14 13 43 43 H 1.08997 * 109.68647 * 58.70940 * 16 15 14 44 44 H 1.09005 * 109.47306 * 298.51449 * 16 15 14 45 45 H 1.08997 * 109.58821 * 294.71905 * 17 16 15 46 46 H 1.09004 * 109.59050 * 174.43650 * 17 16 15 47 47 H 0.96998 * 119.99678 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.58806 * 173.39740 * 27 18 17 49 49 H 1.09006 * 109.58449 * 293.68127 * 27 18 17 50 50 H 1.08999 * 109.49968 * 61.42723 * 28 15 14 51 51 H 1.09005 * 109.49922 * 301.33490 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2306 6 7 2.8256 -0.2075 2.1357 7 7 3.0623 -1.1748 3.1187 8 1 3.6184 -1.0595 3.9052 9 6 2.3853 -2.2875 2.7931 10 6 1.7270 -2.0379 1.6057 11 6 0.8620 -2.9783 0.8700 12 8 0.4211 -2.6722 -0.2212 13 7 0.5603 -4.1771 1.4068 14 6 -0.2987 -5.1118 0.6756 15 6 -0.4829 -6.3872 1.5004 16 6 0.8671 -7.1001 1.6452 17 6 0.6819 -8.3581 2.4995 18 7 -0.3781 -9.1844 1.9059 19 6 -0.1508 -10.5011 1.6061 20 1 0.8356 -10.8247 1.3083 21 6 -1.1883 -11.4200 1.6849 22 7 -2.2929 -11.1115 2.3306 23 14 -1.0166 -13.0943 0.8746 24 1 0.3112 -13.1921 0.2170 25 1 -1.1391 -14.1574 1.9043 26 1 -2.0856 -13.2642 -0.1419 27 6 -1.6867 -8.5714 1.6407 28 6 -1.4785 -7.3111 0.7952 29 1 -0.3634 0.6797 0.7706 30 1 -0.3633 0.3275 -0.9741 31 1 -0.3633 -1.0074 0.2033 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9563 0.8899 35 1 1.5969 -1.7157 -1.3009 36 1 1.7612 -0.1527 -2.1363 37 1 3.1254 -0.8092 -1.2002 38 1 2.3620 -3.2093 3.3554 39 1 0.9118 -4.4210 2.2773 40 1 0.1645 -5.3600 -0.2794 41 1 -1.2703 -4.6502 0.4990 42 1 -0.8642 -6.1288 2.4883 43 1 1.5836 -6.4351 2.1274 44 1 1.2373 -7.3810 0.6592 45 1 0.3990 -8.0733 3.5128 46 1 1.6140 -8.9227 2.5255 47 1 -3.0177 -11.7538 2.3860 48 1 -2.3169 -9.2757 1.0978 49 1 -2.1640 -8.3062 2.5842 50 1 -1.0863 -7.5898 -0.1829 51 1 -2.4303 -6.7942 0.6721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340695210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:05 Heat of formation + Delta-G solvation = 40.639998 kcal Electronic energy + Delta-G solvation = -29447.303215 eV Core-core repulsion = 25576.163520 eV Total energy + Delta-G solvation = -3871.139695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.81115 -39.34102 -37.81192 -36.83092 -34.84981 -32.90301 -31.28647 -31.11328 -30.37423 -29.68701 -27.26874 -27.16706 -26.73435 -24.23102 -23.11178 -22.78230 -22.12997 -21.08221 -20.22144 -19.19930 -18.67365 -18.37720 -16.82769 -16.43579 -15.65566 -15.56395 -15.14766 -14.96988 -14.80349 -14.27341 -14.17910 -14.09390 -13.78345 -13.55198 -13.44088 -13.15339 -12.97657 -12.39724 -12.34957 -12.20136 -12.16028 -11.91055 -11.54917 -11.40226 -11.28655 -11.21633 -11.05684 -10.98885 -10.76490 -10.61231 -10.52731 -10.24973 -10.19547 -9.96965 -9.77990 -9.68750 -9.55121 -9.41596 -9.11591 -8.81265 -8.49334 -6.63537 -5.81116 -3.26878 1.24622 1.97325 2.40057 3.29579 3.35501 3.37528 3.43725 3.45780 4.13886 4.34123 4.47950 4.72451 4.91695 4.97645 5.06441 5.16761 5.22533 5.26095 5.33940 5.37255 5.40321 5.59346 5.61145 5.67471 5.81875 5.85960 5.87585 5.92015 5.95269 6.02021 6.04175 6.05458 6.14355 6.28906 6.30436 6.34765 6.43006 6.47520 6.58667 6.63821 6.73608 6.75710 6.79541 6.80270 6.96786 7.26501 7.33960 7.59378 7.61982 7.79237 8.33905 8.45899 9.20431 9.82874 10.41695 11.27382 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026317 B = 0.002215 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.702492 B =12638.219796 C =13113.728937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.018 3.982 3 C -0.137 4.137 4 C -0.153 4.153 5 C 0.149 3.851 6 N -0.297 5.297 7 N -0.464 5.464 8 H 0.443 0.557 9 C 0.103 3.897 10 C -0.283 4.283 11 C 0.587 3.413 12 O -0.530 6.530 13 N -0.722 5.722 14 C 0.126 3.874 15 C -0.090 4.090 16 C -0.126 4.126 17 C 0.145 3.855 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.063 0.937 21 C 0.005 3.995 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.288 1.288 27 C 0.174 3.826 28 C -0.132 4.132 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.186 0.814 39 H 0.396 0.604 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.015 0.985 46 H 0.052 0.948 47 H 0.253 0.747 48 H 0.081 0.919 49 H 0.018 0.982 50 H 0.058 0.942 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.504 21.826 0.592 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 C -0.195 4.195 4 C -0.210 4.210 5 C -0.020 4.020 6 N -0.118 5.118 7 N -0.168 5.168 8 H 0.288 0.712 9 C -0.050 4.050 10 C -0.298 4.298 11 C 0.375 3.625 12 O -0.409 6.409 13 N -0.373 5.373 14 C 0.003 3.997 15 C -0.109 4.109 16 C -0.166 4.166 17 C 0.019 3.981 18 N -0.314 5.314 19 C -0.384 4.384 20 H 0.081 0.919 21 C -0.194 4.194 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.048 3.952 28 C -0.172 4.172 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.203 0.797 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.033 0.967 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.099 0.901 49 H 0.037 0.963 50 H 0.076 0.924 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.708 22.933 0.209 24.531 hybrid contribution 0.152 -1.734 0.529 1.819 sum 8.859 21.199 0.738 22.987 Atomic orbital electron populations 1.22083 0.92666 1.04380 1.01342 1.18991 0.96257 0.93834 0.89306 1.21840 1.01217 0.94736 1.01658 1.22160 1.00190 1.03855 0.94815 1.22456 0.92888 0.91586 0.95056 1.77175 1.21567 1.12788 1.00305 1.46132 1.39108 1.09595 1.21930 0.71228 1.23189 0.93179 0.92627 0.95973 1.20330 1.12141 0.97412 0.99966 1.17223 0.79634 0.80644 0.85034 1.90598 1.54018 1.75755 1.20541 1.45943 1.52093 1.16517 1.22727 1.21567 0.93838 0.88816 0.95523 1.21359 0.97482 0.93118 0.98933 1.22126 0.95119 0.97998 1.01340 1.20892 0.92926 0.90878 0.93447 1.44005 1.09099 1.07363 1.70958 1.19177 0.96460 0.83539 1.39245 0.91922 1.25142 0.97821 0.97660 0.98778 1.70030 1.06759 1.35422 1.42296 0.86254 0.77632 0.84112 0.78942 1.20220 1.21714 1.21511 1.20702 0.87878 0.90918 0.95701 1.22162 0.96814 0.98024 1.00217 0.93796 0.92181 0.89279 0.92511 0.92316 0.92611 0.88202 0.92498 0.93803 0.79740 0.77027 0.91509 0.91704 0.91388 0.93587 0.92154 0.96718 0.92980 0.93676 0.90064 0.96345 0.92355 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.19 37.16 0.30 -1.35 16 2 C 0.02 0.20 0.75 -155.66 -0.12 0.09 16 3 C -0.14 -1.32 7.93 37.16 0.29 -1.02 16 4 C -0.15 -1.73 8.25 37.16 0.31 -1.43 16 5 C 0.15 1.73 5.64 -82.02 -0.46 1.26 16 6 N -0.30 -3.24 11.93 33.90 0.40 -2.83 16 7 N -0.46 -3.45 7.29 30.85 0.22 -3.22 16 8 H 0.44 1.70 8.96 -182.72 -1.64 0.07 16 9 C 0.10 0.77 11.52 -16.56 -0.19 0.58 16 10 C -0.28 -3.08 5.92 -105.06 -0.62 -3.70 16 11 C 0.59 7.26 7.29 -12.52 -0.09 7.17 16 12 O -0.53 -7.78 10.30 5.27 0.05 -7.73 16 13 N -0.72 -8.01 5.26 -61.38 -0.32 -8.33 16 14 C 0.13 1.64 5.06 -4.04 -0.02 1.62 16 15 C -0.09 -1.32 2.19 -90.42 -0.20 -1.52 16 16 C -0.13 -1.95 5.27 -26.45 -0.14 -2.09 16 17 C 0.15 2.84 6.50 -3.71 -0.02 2.82 16 18 N -0.59 -14.27 2.98 -172.32 -0.51 -14.78 16 19 C -0.25 -6.84 9.55 -15.06 -0.14 -6.98 16 20 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 21 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 22 N -0.90 -25.77 11.39 55.49 0.63 -25.14 16 23 Si 0.90 21.39 29.58 -169.99 -5.03 16.37 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.17 3.96 5.27 -3.71 -0.02 3.94 16 28 C -0.13 -2.34 5.36 -26.61 -0.14 -2.49 16 29 H 0.04 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.09 1.17 4.56 -51.93 -0.24 0.93 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 1.34 4.76 -51.93 -0.25 1.09 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.19 0.67 7.49 -52.49 -0.39 0.28 16 39 H 0.40 3.47 6.60 -40.82 -0.27 3.20 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.56 7.16 -51.93 -0.37 0.19 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 47 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.08 2.10 6.31 -51.93 -0.33 1.77 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 391.67 15.07 5.90 5.90 Total: -1.00 -32.20 391.67 -9.78 -41.98 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -9.78 Total: 0.83 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -1.35 Total: -3.04 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.43 Total: -54.31 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.05 Total: -7.73 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.20 -9.78 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340695210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.623 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds