Wall clock time and date at job start Tue Mar 31 2020 20:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47013 * 2 1 4 4 C 1.53000 * 109.47504 * 239.99656 * 2 1 3 5 5 C 1.50706 * 109.46991 * 119.99531 * 2 1 3 6 6 N 1.30443 * 125.98850 * 237.28470 * 5 2 1 7 7 N 1.39932 * 108.89505 * 180.02562 * 6 5 2 8 8 H 0.97003 * 125.74995 * 180.02562 * 7 6 5 9 9 C 1.34253 * 108.49564 * 359.75015 * 7 6 5 10 10 C 1.38044 * 107.41578 * 0.39648 * 9 7 6 11 11 C 1.47435 * 126.41907 * 179.87543 * 10 9 7 12 12 O 1.21604 * 119.99803 * 185.70586 * 11 10 9 13 13 N 1.34772 * 119.99523 * 5.70038 * 11 10 9 14 14 C 1.46502 * 120.00086 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47518 * 180.02562 * 14 13 11 16 16 C 1.53350 * 109.41771 * 295.12632 * 15 14 13 17 17 C 1.53189 * 109.15139 * 178.67597 * 16 15 14 18 18 N 1.46927 * 108.89230 * 54.57700 * 17 16 15 19 19 C 1.36932 * 120.63017 * 126.34541 * 18 17 16 20 20 H 1.08002 * 120.00560 * 328.27069 * 19 18 17 21 21 C 1.38820 * 120.00102 * 148.27134 * 19 18 17 22 22 N 1.31617 * 119.99731 * 344.30771 * 21 19 18 23 23 Si 1.86798 * 120.00179 * 164.31202 * 21 19 18 24 24 H 1.48501 * 109.47046 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47056 * 119.99737 * 23 21 19 26 26 H 1.48494 * 109.47142 * 240.00028 * 23 21 19 27 27 C 1.46929 * 118.73945 * 306.32093 * 18 17 16 28 28 C 1.53036 * 109.46154 * 175.00034 * 15 14 13 29 29 H 1.08994 * 109.47817 * 311.41468 * 1 2 3 30 30 H 1.09002 * 109.47101 * 71.41808 * 1 2 3 31 31 H 1.09000 * 109.46910 * 191.41178 * 1 2 3 32 32 H 1.09001 * 109.47275 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47114 * 299.99766 * 3 2 1 34 34 H 1.09001 * 109.47020 * 59.99476 * 3 2 1 35 35 H 1.08996 * 109.46946 * 305.62496 * 4 2 1 36 36 H 1.09001 * 109.46559 * 65.61899 * 4 2 1 37 37 H 1.09000 * 109.46952 * 185.61983 * 4 2 1 38 38 H 1.08000 * 126.29365 * 180.24271 * 9 7 6 39 39 H 0.96999 * 120.00262 * 0.02562 * 13 11 10 40 40 H 1.09005 * 109.47258 * 59.99528 * 14 13 11 41 41 H 1.09002 * 109.46626 * 300.00030 * 14 13 11 42 42 H 1.09002 * 109.46023 * 55.02213 * 15 14 13 43 43 H 1.08997 * 109.68647 * 58.70940 * 16 15 14 44 44 H 1.09005 * 109.47306 * 298.51449 * 16 15 14 45 45 H 1.08997 * 109.58821 * 294.71905 * 17 16 15 46 46 H 1.09004 * 109.59050 * 174.43650 * 17 16 15 47 47 H 0.96998 * 119.99678 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.58806 * 173.39740 * 27 18 17 49 49 H 1.09006 * 109.58449 * 293.68127 * 27 18 17 50 50 H 1.08999 * 109.49968 * 61.42723 * 28 15 14 51 51 H 1.09005 * 109.49922 * 301.33490 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2306 6 7 2.8256 -0.2075 2.1357 7 7 3.0623 -1.1748 3.1187 8 1 3.6184 -1.0595 3.9052 9 6 2.3853 -2.2875 2.7931 10 6 1.7270 -2.0379 1.6057 11 6 0.8620 -2.9783 0.8700 12 8 0.4211 -2.6722 -0.2212 13 7 0.5603 -4.1771 1.4068 14 6 -0.2987 -5.1118 0.6756 15 6 -0.4829 -6.3872 1.5004 16 6 0.8671 -7.1001 1.6452 17 6 0.6819 -8.3581 2.4995 18 7 -0.3781 -9.1844 1.9059 19 6 -0.1508 -10.5011 1.6061 20 1 0.8356 -10.8247 1.3083 21 6 -1.1883 -11.4200 1.6849 22 7 -2.2929 -11.1115 2.3306 23 14 -1.0166 -13.0943 0.8746 24 1 0.3112 -13.1921 0.2170 25 1 -1.1391 -14.1574 1.9043 26 1 -2.0856 -13.2642 -0.1419 27 6 -1.6867 -8.5714 1.6407 28 6 -1.4785 -7.3111 0.7952 29 1 -0.3634 0.6797 0.7706 30 1 -0.3633 0.3275 -0.9741 31 1 -0.3633 -1.0074 0.2033 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9563 0.8899 35 1 1.5969 -1.7157 -1.3009 36 1 1.7612 -0.1527 -2.1363 37 1 3.1254 -0.8092 -1.2002 38 1 2.3620 -3.2093 3.3554 39 1 0.9118 -4.4210 2.2773 40 1 0.1645 -5.3600 -0.2794 41 1 -1.2703 -4.6502 0.4990 42 1 -0.8642 -6.1288 2.4883 43 1 1.5836 -6.4351 2.1274 44 1 1.2373 -7.3810 0.6592 45 1 0.3990 -8.0733 3.5128 46 1 1.6140 -8.9227 2.5255 47 1 -3.0177 -11.7538 2.3860 48 1 -2.3169 -9.2757 1.0978 49 1 -2.1640 -8.3062 2.5842 50 1 -1.0863 -7.5898 -0.1829 51 1 -2.4303 -6.7942 0.6721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340695210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:03 Heat of formation + Delta-G solvation = 20.102355 kcal Electronic energy + Delta-G solvation = -29448.193794 eV Core-core repulsion = 25576.163520 eV Total energy + Delta-G solvation = -3872.030274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.52630 -40.33109 -39.18362 -37.68867 -36.19036 -34.40856 -32.64169 -31.95058 -31.56004 -31.11610 -28.36149 -28.04090 -27.89822 -25.82080 -24.09993 -23.69340 -23.51022 -22.47892 -21.13743 -20.60427 -19.50308 -19.12696 -18.62130 -17.35051 -16.86925 -16.53004 -16.44647 -15.94033 -15.80762 -15.61656 -15.27478 -15.18754 -15.02591 -14.91409 -14.75873 -14.33930 -13.97451 -13.90687 -13.62175 -13.43357 -12.99555 -12.96420 -12.93258 -12.76278 -12.58683 -12.33327 -12.24859 -12.19506 -12.01184 -11.97241 -11.87860 -11.80599 -11.56152 -11.40832 -11.13000 -11.02811 -10.58817 -10.50905 -10.49342 -9.97205 -9.64324 -8.59238 -7.85893 -5.34066 0.60623 1.16178 1.45657 1.48376 1.58119 1.84291 2.38950 2.52012 2.52763 3.29116 3.43067 3.72330 3.76222 3.91933 4.01128 4.10148 4.13844 4.15724 4.17016 4.41260 4.51482 4.57165 4.60139 4.60807 4.77224 4.80865 4.83842 4.85676 4.94187 4.98291 4.99385 5.05880 5.08078 5.13675 5.16944 5.19765 5.23876 5.35100 5.37024 5.44449 5.49634 5.50988 5.57679 5.58170 5.69325 5.78884 5.85210 6.31253 6.43832 6.54892 6.78228 7.18848 7.47060 7.90715 8.42705 9.19914 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026317 B = 0.002215 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.702492 B =12638.219796 C =13113.728937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.014 3.986 3 C -0.130 4.130 4 C -0.147 4.147 5 C 0.133 3.867 6 N -0.321 5.321 7 N -0.450 5.450 8 H 0.460 0.540 9 C 0.131 3.869 10 C -0.315 4.315 11 C 0.586 3.414 12 O -0.558 6.558 13 N -0.713 5.713 14 C 0.141 3.859 15 C -0.077 4.077 16 C -0.113 4.113 17 C 0.139 3.861 18 N -0.612 5.612 19 C -0.261 4.261 20 H 0.062 0.938 21 C -0.049 4.049 22 N -0.933 5.933 23 Si 0.962 3.038 24 H -0.267 1.267 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.180 3.820 28 C -0.122 4.122 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.229 0.771 39 H 0.409 0.591 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.019 0.981 46 H 0.049 0.951 47 H 0.249 0.751 48 H 0.042 0.958 49 H -0.001 1.001 50 H 0.049 0.951 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.185 23.065 1.386 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.012 3.988 3 C -0.187 4.187 4 C -0.204 4.204 5 C -0.035 4.035 6 N -0.143 5.143 7 N -0.155 5.155 8 H 0.308 0.692 9 C -0.023 4.023 10 C -0.330 4.330 11 C 0.375 3.625 12 O -0.440 6.440 13 N -0.364 5.364 14 C 0.017 3.983 15 C -0.096 4.096 16 C -0.152 4.152 17 C 0.014 3.986 18 N -0.336 5.336 19 C -0.392 4.392 20 H 0.079 0.921 21 C -0.244 4.244 22 N -0.579 5.579 23 Si 0.791 3.209 24 H -0.192 1.192 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.054 3.946 28 C -0.162 4.162 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.246 0.754 39 H 0.246 0.754 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.036 0.964 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.018 0.982 50 H 0.068 0.932 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.441 24.206 1.036 26.382 hybrid contribution -0.319 -2.100 0.360 2.154 sum 10.122 22.106 1.396 24.354 Atomic orbital electron populations 1.22000 0.93049 1.03257 1.01608 1.19009 0.95978 0.94536 0.89312 1.21769 1.00902 0.93979 1.02085 1.22069 0.99768 1.02988 0.95599 1.22545 0.93346 0.92214 0.95353 1.77111 1.21964 1.14128 1.01074 1.46174 1.38626 1.09012 1.21712 0.69218 1.23757 0.90593 0.93482 0.94515 1.20294 1.13864 0.97145 1.01725 1.17443 0.79446 0.80839 0.84753 1.90596 1.55129 1.76330 1.21908 1.45722 1.51735 1.15862 1.23112 1.21208 0.94102 0.88165 0.94810 1.21187 0.96218 0.93024 0.99196 1.21981 0.96358 0.96659 1.00195 1.21089 0.91326 0.91986 0.94192 1.44294 1.10323 1.07215 1.71740 1.19474 0.96345 0.85028 1.38340 0.92058 1.25853 0.97792 1.01007 0.99786 1.70168 1.07418 1.36378 1.43953 0.85286 0.77725 0.80139 0.77776 1.19154 1.21868 1.21789 1.20506 0.86997 0.92060 0.95018 1.21964 0.98822 0.96439 0.98936 0.93492 0.91809 0.91073 0.92844 0.91186 0.92839 0.90134 0.91633 0.94070 0.75425 0.75376 0.92569 0.92000 0.90437 0.89309 0.93307 0.96352 0.93243 0.94172 0.93963 0.98244 0.93195 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.19 71.98 0.59 -2.53 16 2 C 0.01 0.30 0.75 -52.93 -0.04 0.26 16 3 C -0.13 -2.37 7.93 71.98 0.57 -1.80 16 4 C -0.15 -3.27 8.25 71.98 0.59 -2.68 16 5 C 0.13 2.91 5.64 43.52 0.25 3.15 16 6 N -0.32 -6.38 11.93 -46.67 -0.56 -6.93 16 7 N -0.45 -5.22 7.29 -56.32 -0.41 -5.63 16 8 H 0.46 1.88 8.96 -213.42 -1.91 -0.03 16 9 C 0.13 1.44 11.52 84.28 0.97 2.41 16 10 C -0.32 -6.13 5.92 -20.15 -0.12 -6.25 16 11 C 0.59 13.44 7.29 86.67 0.63 14.07 16 12 O -0.56 -16.09 10.30 -4.04 -0.04 -16.14 16 13 N -0.71 -13.68 5.26 -466.37 -2.45 -16.13 16 14 C 0.14 3.37 5.06 86.38 0.44 3.80 16 15 C -0.08 -2.09 2.19 -10.67 -0.02 -2.12 16 16 C -0.11 -3.16 5.27 30.77 0.16 -3.00 16 17 C 0.14 5.25 6.50 86.36 0.56 5.81 16 18 N -0.61 -29.64 2.98 -699.09 -2.08 -31.72 16 19 C -0.26 -14.18 9.55 84.04 0.80 -13.38 16 20 H 0.06 3.27 7.88 -2.91 -0.02 3.25 16 21 C -0.05 -2.70 4.92 84.86 0.42 -2.28 16 22 N -0.93 -54.86 11.39 21.65 0.25 -54.61 16 23 Si 0.96 44.64 29.58 68.60 2.03 46.67 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 27 C 0.18 8.35 5.27 86.36 0.46 8.80 16 28 C -0.12 -4.24 5.36 30.67 0.16 -4.07 16 29 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 30 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 31 H 0.07 1.86 4.56 -2.39 -0.01 1.85 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 2.17 4.76 -2.39 -0.01 2.16 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.23 0.32 7.49 -2.91 -0.02 0.29 16 39 H 0.41 5.37 6.60 -92.71 -0.61 4.76 16 40 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.09 1.76 7.16 -2.39 -0.02 1.74 16 44 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 47 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 48 H 0.04 2.26 6.31 -2.39 -0.02 2.25 16 49 H 0.00 -0.03 8.14 -2.38 -0.02 -0.04 16 50 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -72.64 391.67 1.57 -71.07 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -1.58 Total: 13.23 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 6.42 Total: 0.20 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -5.25 Total: -115.02 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.04 Total: -16.14 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -72.64 1.57 -71.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340695210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.168 kcal (2) G-P(sol) polarization free energy of solvation -72.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds