Wall clock time and date at job start Tue Mar 31 2020 20:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34946 * 126.03768 * 2 1 4 4 C 1.35321 * 107.74753 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.03809 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47098 * 5.62270 * 5 4 3 7 7 C 1.53005 * 109.47067 * 125.62528 * 5 4 3 8 8 C 1.50695 * 109.46754 * 245.62267 * 5 4 3 9 9 O 1.21283 * 120.00660 * 5.65365 * 8 5 4 10 10 N 1.34774 * 120.00004 * 185.64509 * 8 5 4 11 11 C 1.46499 * 120.00197 * 180.02562 * 10 8 5 12 12 C 1.53007 * 109.47229 * 180.02562 * 11 10 8 13 13 C 1.53036 * 109.45690 * 295.02677 * 12 11 10 14 14 C 1.53195 * 109.31281 * 178.60353 * 13 12 11 15 15 N 1.46928 * 108.76778 * 54.65082 * 14 13 12 16 16 C 1.36934 * 120.62735 * 126.40557 * 15 14 13 17 17 H 1.07999 * 120.00694 * 333.28009 * 16 15 14 18 18 C 1.38817 * 119.99757 * 153.28257 * 16 15 14 19 19 N 1.31627 * 119.99823 * 342.33798 * 18 16 15 20 20 Si 1.86802 * 120.00191 * 162.33932 * 18 16 15 21 21 H 1.48493 * 109.47184 * 89.99792 * 20 18 16 22 22 H 1.48495 * 109.46731 * 209.99819 * 20 18 16 23 23 H 1.48503 * 109.46615 * 329.99757 * 20 18 16 24 24 C 1.46926 * 118.73736 * 306.39069 * 15 14 13 25 25 C 1.53044 * 109.45961 * 174.97384 * 12 11 10 26 26 C 1.39867 * 107.91856 * 359.97438 * 4 3 2 27 27 N 1.30842 * 108.20410 * 0.26345 * 26 4 3 28 28 H 1.09004 * 109.47029 * 90.00617 * 1 2 3 29 29 H 1.09009 * 109.47196 * 210.00079 * 1 2 3 30 30 H 1.08999 * 109.47656 * 330.00577 * 1 2 3 31 31 H 1.07998 * 126.12752 * 359.95908 * 3 2 1 32 32 H 1.09005 * 109.47256 * 60.00845 * 6 5 4 33 33 H 1.09004 * 109.47001 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47771 * 300.00287 * 6 5 4 35 35 H 1.09005 * 109.46614 * 59.99798 * 7 5 4 36 36 H 1.08995 * 109.46573 * 179.97438 * 7 5 4 37 37 H 1.08997 * 109.46866 * 299.99701 * 7 5 4 38 38 H 0.96998 * 120.00025 * 0.02562 * 10 8 5 39 39 H 1.09005 * 109.47229 * 299.99712 * 11 10 8 40 40 H 1.09001 * 109.47465 * 60.00558 * 11 10 8 41 41 H 1.08999 * 109.46136 * 54.99753 * 12 11 10 42 42 H 1.09006 * 109.49902 * 298.56254 * 13 12 11 43 43 H 1.09000 * 109.50229 * 58.66199 * 13 12 11 44 44 H 1.09009 * 109.59265 * 294.86544 * 14 13 12 45 45 H 1.08998 * 109.70597 * 174.50940 * 14 13 12 46 46 H 0.96993 * 120.00075 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.58343 * 293.81506 * 24 15 14 48 48 H 1.09003 * 109.70227 * 173.46300 * 24 15 14 49 49 H 1.09004 * 109.49446 * 301.33301 * 25 12 11 50 50 H 1.08994 * 109.50101 * 61.40067 * 25 12 11 51 51 H 1.08001 * 125.89918 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5453 0.0013 6 6 4.3451 3.0089 0.1427 7 6 5.6717 1.1600 1.1743 8 6 5.5186 1.3620 -1.2924 9 8 5.0492 0.6734 -2.1736 10 7 6.7115 1.9634 -1.4705 11 6 7.4410 1.7857 -2.7284 12 6 8.7549 2.5677 -2.6710 13 6 8.4533 4.0656 -2.5852 14 6 9.7700 4.8430 -2.4927 15 7 10.6237 4.4636 -3.6267 16 6 11.1491 5.4192 -4.4548 17 1 10.6425 6.3651 -4.5778 18 6 12.3330 5.1723 -5.1363 19 7 13.1276 4.1991 -4.7438 20 14 12.7985 6.2211 -6.6103 21 1 13.5943 7.3892 -6.1552 22 1 13.6052 5.4117 -7.5586 23 1 11.5658 6.6959 -7.2889 24 6 10.9032 3.0393 -3.8550 25 6 9.5737 2.2821 -3.9320 26 6 3.5346 -0.7321 0.0015 27 7 2.2891 -1.1328 -0.0042 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.9281 2.1193 -0.0006 32 1 3.8022 3.1415 1.0786 33 1 5.2306 3.6445 0.1437 34 1 3.7013 3.2835 -0.6929 35 1 5.9729 0.1172 1.0735 36 1 6.5573 1.7953 1.1745 37 1 5.1287 1.2925 2.1100 38 1 7.0871 2.5140 -0.7657 39 1 7.6548 0.7274 -2.8781 40 1 6.8343 2.1544 -3.5556 41 1 9.3221 2.2606 -1.7924 42 1 7.9077 4.3785 -3.4755 43 1 7.8502 4.2652 -1.6994 44 1 10.2742 4.5981 -1.5577 45 1 9.5682 5.9135 -2.5293 46 1 13.9550 4.0268 -5.2197 47 1 11.4998 2.6474 -3.0313 48 1 11.4480 2.9172 -4.7912 49 1 9.7681 1.2121 -4.0049 50 1 9.0172 2.6114 -4.8095 51 1 4.4054 -1.3710 0.0026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344903497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:13 Heat of formation + Delta-G solvation = 50.722197 kcal Electronic energy + Delta-G solvation = -29214.289272 eV Core-core repulsion = 25343.586774 eV Total energy + Delta-G solvation = -3870.702498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.60036 -39.78855 -37.84434 -35.60361 -34.90312 -33.21964 -32.65543 -30.77415 -29.82918 -29.55590 -27.69865 -26.91479 -26.68832 -24.31664 -23.33267 -22.20540 -21.33968 -21.03691 -20.75669 -19.43892 -18.90577 -17.53499 -16.78837 -16.48234 -15.79864 -15.56760 -15.25182 -14.84236 -14.51938 -14.27055 -14.11997 -13.97235 -13.65635 -13.48073 -13.29215 -13.12085 -13.02855 -12.90561 -12.68699 -12.44990 -12.36819 -12.32518 -12.25686 -11.82236 -11.80124 -11.35422 -11.28129 -10.98093 -10.69661 -10.64062 -10.48591 -10.23140 -10.20704 -9.92505 -9.69433 -9.55546 -9.51986 -9.38572 -8.88672 -8.55289 -8.45234 -6.67454 -5.77998 -3.18783 1.71067 2.32709 2.60453 2.74977 3.37769 3.40433 3.45185 3.47700 4.21769 4.49933 4.50690 4.56225 4.68483 4.77464 4.81322 4.90999 5.04994 5.10765 5.18398 5.26830 5.31413 5.39473 5.43051 5.46063 5.48798 5.55127 5.62433 5.64477 5.81716 5.87002 5.90194 5.98699 6.02784 6.07693 6.18306 6.33710 6.45806 6.47091 6.53875 6.61835 6.71948 6.78542 6.79848 6.82923 6.98963 7.39097 7.53506 7.62628 7.68220 7.80224 8.34622 8.45664 9.22420 9.86531 10.42383 11.30440 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.002050 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.478025 B =13656.274461 C =13720.530753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.380 5.380 3 C 0.061 3.939 4 C -0.206 4.206 5 C -0.001 4.001 6 C -0.142 4.142 7 C -0.137 4.137 8 C 0.518 3.482 9 O -0.535 6.535 10 N -0.724 5.724 11 C 0.124 3.876 12 C -0.089 4.089 13 C -0.126 4.126 14 C 0.145 3.855 15 N -0.593 5.593 16 C -0.250 4.250 17 H 0.065 0.935 18 C 0.000 4.000 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.170 3.830 25 C -0.133 4.133 26 C 0.075 3.925 27 N -0.301 5.301 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.172 0.828 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.399 0.601 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.052 0.948 46 H 0.253 0.747 47 H 0.017 0.983 48 H 0.090 0.910 49 H 0.050 0.950 50 H 0.057 0.943 51 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.873 -5.617 14.112 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.162 5.162 3 C -0.085 4.085 4 C -0.218 4.218 5 C -0.006 4.006 6 C -0.199 4.199 7 C -0.195 4.195 8 C 0.303 3.697 9 O -0.411 6.411 10 N -0.376 5.376 11 C 0.001 3.999 12 C -0.108 4.108 13 C -0.165 4.165 14 C 0.019 3.981 15 N -0.315 5.315 16 C -0.380 4.380 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.045 3.955 25 C -0.173 4.173 26 C -0.112 4.112 27 N -0.122 5.122 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.189 0.811 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.108 0.892 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -23.010 -7.166 13.369 27.560 hybrid contribution 1.021 1.487 -0.540 1.883 sum -21.989 -5.680 12.828 26.083 Atomic orbital electron populations 1.21818 0.74387 1.04264 1.03336 1.48363 1.06485 1.03895 1.57448 1.22220 0.90718 0.93240 1.02336 1.19382 0.92841 0.93496 1.16064 1.19007 0.92463 0.95548 0.93580 1.21885 1.02419 0.93026 1.02579 1.21870 0.98644 1.02199 0.96799 1.20480 0.81007 0.79370 0.88799 1.90700 1.67571 1.38801 1.43997 1.46106 1.20691 1.51691 1.19111 1.21552 0.92809 1.00144 0.85416 1.21304 0.93980 0.95436 1.00118 1.22064 0.99294 0.94842 1.00334 1.20888 0.89786 0.96771 0.90686 1.44064 1.56442 1.02145 1.28892 1.19177 1.02358 0.97368 1.19080 0.91743 1.25008 0.95286 0.98780 1.00764 1.70031 1.11445 1.33314 1.40024 0.86319 0.78064 0.79624 0.82911 1.21462 1.21567 1.20539 1.20788 0.90821 0.82337 1.01588 1.22176 0.99752 0.99428 0.95909 1.23602 0.94947 0.94424 0.98214 1.77353 1.01614 1.08139 1.25061 0.90862 0.89404 0.89599 0.81118 0.91258 0.91464 0.91974 0.91936 0.91782 0.91362 0.76657 0.91945 0.91822 0.91354 0.92229 0.93505 0.96641 0.92948 0.93664 0.96516 0.89208 0.93097 0.92452 0.80580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.47 59.84 0.69 1.25 16 2 N -0.38 -3.82 4.01 -68.16 -0.27 -4.09 16 3 C 0.06 0.57 10.45 -17.22 -0.18 0.39 16 4 C -0.21 -2.23 4.14 -105.05 -0.43 -2.66 16 5 C 0.00 -0.01 0.81 -156.81 -0.13 -0.14 16 6 C -0.14 -1.03 7.37 37.15 0.27 -0.75 16 7 C -0.14 -1.04 8.16 37.16 0.30 -0.74 16 8 C 0.52 6.65 6.45 -10.99 -0.07 6.58 16 9 O -0.53 -9.17 15.72 5.55 0.09 -9.08 16 10 N -0.72 -8.56 5.10 -60.29 -0.31 -8.86 16 11 C 0.12 1.75 5.06 -4.04 -0.02 1.73 16 12 C -0.09 -1.38 2.19 -90.57 -0.20 -1.58 16 13 C -0.13 -2.02 5.25 -26.61 -0.14 -2.15 16 14 C 0.15 2.90 6.52 -3.71 -0.02 2.88 16 15 N -0.59 -14.54 3.00 -172.31 -0.52 -15.05 16 16 C -0.25 -6.80 9.60 -15.06 -0.14 -6.95 16 17 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 18 C 0.00 0.00 4.92 -17.43 -0.09 -0.09 16 19 N -0.90 -26.05 11.13 55.49 0.62 -25.43 16 20 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 C 0.17 3.98 5.32 -3.71 -0.02 3.96 16 25 C -0.13 -2.45 5.36 -26.61 -0.14 -2.60 16 26 C 0.07 0.91 11.05 -17.36 -0.19 0.71 16 27 N -0.30 -3.85 12.58 30.62 0.39 -3.47 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.17 1.05 7.27 -52.49 -0.38 0.67 16 32 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.07 0.44 7.98 -51.93 -0.41 0.03 16 34 H 0.06 0.48 7.73 -51.93 -0.40 0.08 16 35 H 0.06 0.50 7.93 -51.93 -0.41 0.09 16 36 H 0.06 0.42 7.27 -51.93 -0.38 0.04 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.40 3.86 6.57 -40.82 -0.27 3.59 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.61 7.15 -51.93 -0.37 0.24 16 44 H 0.02 0.31 8.14 -51.92 -0.42 -0.11 16 45 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 46 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 2.37 5.97 -51.93 -0.31 2.06 16 49 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.18 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 402.39 15.07 6.06 6.06 Total: -1.00 -34.51 402.39 -8.30 -42.81 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -8.81 Total: 0.68 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.52 Total: -0.15 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.10 Total: -56.91 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.51 -8.30 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344903497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.534 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds