Wall clock time and date at job start Tue Mar 31 2020 20:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34946 * 126.03768 * 2 1 4 4 C 1.35321 * 107.74753 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.03809 * 180.02562 * 4 3 2 6 6 C 1.52994 * 109.47098 * 5.62270 * 5 4 3 7 7 C 1.53005 * 109.47067 * 125.62528 * 5 4 3 8 8 C 1.50695 * 109.46754 * 245.62267 * 5 4 3 9 9 O 1.21283 * 120.00660 * 5.65365 * 8 5 4 10 10 N 1.34774 * 120.00004 * 185.64509 * 8 5 4 11 11 C 1.46499 * 120.00197 * 180.02562 * 10 8 5 12 12 C 1.53007 * 109.47229 * 180.02562 * 11 10 8 13 13 C 1.53036 * 109.45690 * 295.02677 * 12 11 10 14 14 C 1.53195 * 109.31281 * 178.60353 * 13 12 11 15 15 N 1.46928 * 108.76778 * 54.65082 * 14 13 12 16 16 C 1.36934 * 120.62735 * 126.40557 * 15 14 13 17 17 H 1.07999 * 120.00694 * 333.28009 * 16 15 14 18 18 C 1.38817 * 119.99757 * 153.28257 * 16 15 14 19 19 N 1.31627 * 119.99823 * 342.33798 * 18 16 15 20 20 Si 1.86802 * 120.00191 * 162.33932 * 18 16 15 21 21 H 1.48493 * 109.47184 * 89.99792 * 20 18 16 22 22 H 1.48495 * 109.46731 * 209.99819 * 20 18 16 23 23 H 1.48503 * 109.46615 * 329.99757 * 20 18 16 24 24 C 1.46926 * 118.73736 * 306.39069 * 15 14 13 25 25 C 1.53044 * 109.45961 * 174.97384 * 12 11 10 26 26 C 1.39867 * 107.91856 * 359.97438 * 4 3 2 27 27 N 1.30842 * 108.20410 * 0.26345 * 26 4 3 28 28 H 1.09004 * 109.47029 * 90.00617 * 1 2 3 29 29 H 1.09009 * 109.47196 * 210.00079 * 1 2 3 30 30 H 1.08999 * 109.47656 * 330.00577 * 1 2 3 31 31 H 1.07998 * 126.12752 * 359.95908 * 3 2 1 32 32 H 1.09005 * 109.47256 * 60.00845 * 6 5 4 33 33 H 1.09004 * 109.47001 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47771 * 300.00287 * 6 5 4 35 35 H 1.09005 * 109.46614 * 59.99798 * 7 5 4 36 36 H 1.08995 * 109.46573 * 179.97438 * 7 5 4 37 37 H 1.08997 * 109.46866 * 299.99701 * 7 5 4 38 38 H 0.96998 * 120.00025 * 0.02562 * 10 8 5 39 39 H 1.09005 * 109.47229 * 299.99712 * 11 10 8 40 40 H 1.09001 * 109.47465 * 60.00558 * 11 10 8 41 41 H 1.08999 * 109.46136 * 54.99753 * 12 11 10 42 42 H 1.09006 * 109.49902 * 298.56254 * 13 12 11 43 43 H 1.09000 * 109.50229 * 58.66199 * 13 12 11 44 44 H 1.09009 * 109.59265 * 294.86544 * 14 13 12 45 45 H 1.08998 * 109.70597 * 174.50940 * 14 13 12 46 46 H 0.96993 * 120.00075 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.58343 * 293.81506 * 24 15 14 48 48 H 1.09003 * 109.70227 * 173.46300 * 24 15 14 49 49 H 1.09004 * 109.49446 * 301.33301 * 25 12 11 50 50 H 1.08994 * 109.50101 * 61.40067 * 25 12 11 51 51 H 1.08001 * 125.89918 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5453 0.0013 6 6 4.3451 3.0089 0.1427 7 6 5.6717 1.1600 1.1743 8 6 5.5186 1.3620 -1.2924 9 8 5.0492 0.6734 -2.1736 10 7 6.7115 1.9634 -1.4705 11 6 7.4410 1.7857 -2.7284 12 6 8.7549 2.5677 -2.6710 13 6 8.4533 4.0656 -2.5852 14 6 9.7700 4.8430 -2.4927 15 7 10.6237 4.4636 -3.6267 16 6 11.1491 5.4192 -4.4548 17 1 10.6425 6.3651 -4.5778 18 6 12.3330 5.1723 -5.1363 19 7 13.1276 4.1991 -4.7438 20 14 12.7985 6.2211 -6.6103 21 1 13.5943 7.3892 -6.1552 22 1 13.6052 5.4117 -7.5586 23 1 11.5658 6.6959 -7.2889 24 6 10.9032 3.0393 -3.8550 25 6 9.5737 2.2821 -3.9320 26 6 3.5346 -0.7321 0.0015 27 7 2.2891 -1.1328 -0.0042 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5137 31 1 1.9281 2.1193 -0.0006 32 1 3.8022 3.1415 1.0786 33 1 5.2306 3.6445 0.1437 34 1 3.7013 3.2835 -0.6929 35 1 5.9729 0.1172 1.0735 36 1 6.5573 1.7953 1.1745 37 1 5.1287 1.2925 2.1100 38 1 7.0871 2.5140 -0.7657 39 1 7.6548 0.7274 -2.8781 40 1 6.8343 2.1544 -3.5556 41 1 9.3221 2.2606 -1.7924 42 1 7.9077 4.3785 -3.4755 43 1 7.8502 4.2652 -1.6994 44 1 10.2742 4.5981 -1.5577 45 1 9.5682 5.9135 -2.5293 46 1 13.9550 4.0268 -5.2197 47 1 11.4998 2.6474 -3.0313 48 1 11.4480 2.9172 -4.7912 49 1 9.7681 1.2121 -4.0049 50 1 9.0172 2.6114 -4.8095 51 1 4.4054 -1.3710 0.0026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344903497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:11 Heat of formation + Delta-G solvation = 28.511730 kcal Electronic energy + Delta-G solvation = -29215.252390 eV Core-core repulsion = 25343.586774 eV Total energy + Delta-G solvation = -3871.665616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.35650 -40.79302 -39.33484 -36.45915 -36.29153 -34.41867 -33.73691 -32.44494 -31.36631 -30.41579 -28.40980 -28.23428 -27.31565 -25.90195 -24.35899 -23.71896 -22.69243 -21.94405 -21.67226 -20.78281 -20.01444 -18.67587 -18.26888 -17.37247 -16.90539 -16.68083 -16.28293 -16.21925 -15.69945 -15.29369 -15.26231 -15.18744 -14.85109 -14.81973 -14.69943 -14.04031 -13.97926 -13.79332 -13.56166 -13.45846 -13.43161 -13.19654 -13.10681 -12.98186 -12.91658 -12.78206 -12.53185 -12.43353 -12.23693 -12.00168 -11.93447 -11.81245 -11.58492 -11.37871 -11.20402 -11.07153 -10.61446 -10.49121 -10.31615 -9.97148 -9.29228 -8.65820 -7.85348 -5.28277 0.98589 1.46261 1.48583 1.57690 1.71815 1.77143 1.79326 2.45385 2.52766 3.28909 3.59609 3.74063 3.77932 3.88040 3.98582 3.99708 4.08467 4.12549 4.18967 4.29264 4.42926 4.45189 4.56185 4.57503 4.70249 4.73744 4.76447 4.81290 4.84945 4.86764 4.91339 4.97050 4.97881 5.05714 5.06700 5.16979 5.19062 5.32214 5.33310 5.35562 5.43657 5.44144 5.54278 5.59459 5.68202 5.68448 5.82410 6.19242 6.41573 6.69310 6.75892 7.17687 7.38967 7.91148 8.40829 9.20709 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.030780 B = 0.002050 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.478025 B =13656.274461 C =13720.530753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.067 3.933 4 C -0.225 4.225 5 C 0.007 3.993 6 C -0.141 4.141 7 C -0.136 4.136 8 C 0.517 3.483 9 O -0.583 6.583 10 N -0.713 5.713 11 C 0.138 3.862 12 C -0.077 4.077 13 C -0.113 4.113 14 C 0.139 3.861 15 N -0.612 5.612 16 C -0.258 4.258 17 H 0.066 0.934 18 C -0.054 4.054 19 N -0.935 5.935 20 Si 0.963 3.037 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.272 1.272 24 C 0.176 3.824 25 C -0.123 4.123 26 C 0.055 3.945 27 N -0.340 5.340 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.120 0.880 31 H 0.207 0.793 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.412 0.588 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.020 0.980 45 H 0.052 0.948 46 H 0.249 0.751 47 H -0.001 1.001 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.047 0.953 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.006 -4.068 15.731 28.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.080 4.080 4 C -0.237 4.237 5 C 0.003 3.997 6 C -0.198 4.198 7 C -0.193 4.193 8 C 0.304 3.696 9 O -0.462 6.462 10 N -0.365 5.365 11 C 0.014 3.986 12 C -0.096 4.096 13 C -0.151 4.151 14 C 0.014 3.986 15 N -0.336 5.336 16 C -0.389 4.389 17 H 0.083 0.917 18 C -0.249 4.249 19 N -0.581 5.581 20 Si 0.792 3.208 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.197 1.197 24 C 0.050 3.950 25 C -0.163 4.163 26 C -0.130 4.130 27 N -0.163 5.163 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.223 0.777 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.250 0.750 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.017 0.983 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.066 0.934 51 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -25.167 -5.599 15.030 29.844 hybrid contribution 1.624 1.003 -1.009 2.159 sum -23.544 -4.596 14.021 27.785 Atomic orbital electron populations 1.22179 0.72109 1.06113 1.04263 1.48746 1.07863 1.03389 1.56424 1.22787 0.90243 0.94456 1.00535 1.19630 0.94098 0.93009 1.16951 1.19006 0.91813 0.96970 0.91922 1.21934 1.03164 0.91080 1.03613 1.21890 0.99024 1.01856 0.96565 1.21167 0.80800 0.78117 0.89474 1.90684 1.68716 1.40854 1.45933 1.45951 1.20367 1.51653 1.18559 1.21202 0.91874 0.99333 0.86238 1.21136 0.94258 0.95487 0.98676 1.21917 0.97291 0.94147 1.01786 1.21093 0.90778 0.97537 0.89183 1.44349 1.56957 1.02099 1.30213 1.19505 1.02175 0.97823 1.19384 0.91651 1.25740 0.95584 1.00314 1.03304 1.70180 1.11747 1.35086 1.41130 0.85336 0.77735 0.78015 0.79743 1.21082 1.22053 1.19747 1.20580 0.92746 0.82757 0.98868 1.21982 0.97422 0.99519 0.97337 1.23742 0.94919 0.95572 0.98783 1.77261 1.02322 1.10098 1.26572 0.90347 0.89202 0.86200 0.77685 0.88929 0.90351 0.92461 0.93039 0.90295 0.89943 0.75002 0.92556 0.93070 0.90375 0.93321 0.89357 0.96229 0.92938 0.94217 0.98324 0.92978 0.91583 0.93397 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 11.47 127.77 1.47 2.29 16 2 N -0.38 -7.11 4.01 -369.56 -1.48 -8.59 16 3 C 0.07 1.09 10.45 83.54 0.87 1.96 16 4 C -0.23 -4.53 4.14 -20.14 -0.08 -4.61 16 5 C 0.01 0.12 0.81 -53.68 -0.04 0.08 16 6 C -0.14 -1.48 7.37 71.98 0.53 -0.95 16 7 C -0.14 -1.69 8.16 71.98 0.59 -1.11 16 8 C 0.52 12.40 6.45 87.66 0.56 12.97 16 9 O -0.58 -19.77 15.72 -3.04 -0.05 -19.81 16 10 N -0.71 -15.01 5.10 -463.05 -2.36 -17.38 16 11 C 0.14 3.64 5.06 86.38 0.44 4.08 16 12 C -0.08 -2.22 2.19 -10.76 -0.02 -2.24 16 13 C -0.11 -3.30 5.25 30.67 0.16 -3.14 16 14 C 0.14 5.36 6.52 86.36 0.56 5.92 16 15 N -0.61 -30.15 3.00 -699.07 -2.10 -32.25 16 16 C -0.26 -14.16 9.60 84.04 0.81 -13.35 16 17 H 0.07 3.49 7.88 -2.91 -0.02 3.46 16 18 C -0.05 -3.05 4.92 84.86 0.42 -2.63 16 19 N -0.93 -55.41 11.13 21.65 0.24 -55.17 16 20 Si 0.96 45.08 29.59 68.60 2.03 47.11 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 24 C 0.18 8.39 5.32 86.36 0.46 8.85 16 25 C -0.12 -4.50 5.36 30.67 0.16 -4.33 16 26 C 0.06 1.35 11.05 85.23 0.94 2.29 16 27 N -0.34 -8.73 12.58 -57.02 -0.72 -9.45 16 28 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.21 1.69 7.27 -2.91 -0.02 1.67 16 32 H 0.09 0.58 8.10 -2.38 -0.02 0.56 16 33 H 0.08 0.67 7.98 -2.38 -0.02 0.65 16 34 H 0.06 0.68 7.73 -2.39 -0.02 0.66 16 35 H 0.05 0.76 7.93 -2.38 -0.02 0.74 16 36 H 0.08 0.73 7.27 -2.39 -0.02 0.72 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.41 6.38 6.57 -92.71 -0.61 5.77 16 39 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.09 1.89 7.15 -2.39 -0.02 1.88 16 44 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 46 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 47 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 48 H 0.05 2.86 5.97 -2.39 -0.01 2.85 16 49 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 51 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -77.98 402.39 3.68 -74.30 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.30 Total: 15.17 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 7.82 Total: 6.07 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -6.42 Total: -122.84 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -77.98 3.68 -74.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344903497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.811 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds