Wall clock time and date at job start Tue Mar 31 2020 19:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46938 * 2 1 4 4 C 1.50690 * 109.47383 * 120.00167 * 2 1 3 5 5 C 1.39681 * 126.06956 * 275.00119 * 4 2 1 6 6 C 1.38410 * 105.35886 * 180.24538 * 5 4 2 7 7 C 1.47158 * 126.88381 * 179.77358 * 6 5 4 8 8 O 1.21631 * 119.99899 * 185.32391 * 7 6 5 9 9 N 1.34773 * 119.99986 * 5.32524 * 7 6 5 10 10 C 1.46499 * 119.99951 * 184.65989 * 9 7 6 11 11 C 1.53005 * 109.47042 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.50051 * 54.99699 * 11 10 9 13 13 C 1.53042 * 109.49736 * 175.06398 * 11 10 9 14 14 C 1.53039 * 109.53965 * 181.31277 * 13 11 10 15 15 C 1.53192 * 109.31465 * 298.63697 * 14 13 11 16 16 N 1.46927 * 108.77444 * 54.63181 * 15 14 13 17 17 C 1.36946 * 120.63229 * 126.39207 * 16 15 14 18 18 H 1.07998 * 120.00123 * 211.47702 * 17 16 15 19 19 C 1.38806 * 119.99601 * 31.47646 * 17 16 15 20 20 N 1.31625 * 120.00288 * 10.63167 * 19 17 16 21 21 Si 1.86795 * 120.00151 * 190.62888 * 19 17 16 22 22 H 1.48510 * 109.46952 * 60.00118 * 21 19 17 23 23 H 1.48494 * 109.47739 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47534 * 300.00666 * 21 19 17 25 25 C 1.46935 * 118.76472 * 306.41204 * 16 15 14 26 26 N 1.36601 * 106.22909 * 359.64760 * 6 5 4 27 27 C 1.46504 * 125.18660 * 180.13652 * 26 6 5 28 28 N 1.28438 * 109.62230 * 0.36761 * 26 6 5 29 29 H 1.09003 * 109.47182 * 299.99622 * 1 2 3 30 30 H 1.08997 * 109.47640 * 59.99916 * 1 2 3 31 31 H 1.08998 * 109.47394 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46770 * 240.00197 * 2 1 3 33 33 H 1.09005 * 109.46996 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47568 * 300.00168 * 3 2 1 35 35 H 1.08997 * 109.47229 * 60.00478 * 3 2 1 36 36 H 1.07992 * 127.32161 * 359.97438 * 5 4 2 37 37 H 0.96997 * 120.00143 * 4.65658 * 9 7 6 38 38 H 1.08997 * 109.47100 * 299.99762 * 10 9 7 39 39 H 1.08999 * 109.47396 * 59.99871 * 10 9 7 40 40 H 1.08996 * 109.46203 * 301.33470 * 13 11 10 41 41 H 1.08999 * 109.45751 * 61.30813 * 13 11 10 42 42 H 1.09001 * 109.49554 * 58.58279 * 14 13 11 43 43 H 1.08992 * 109.50330 * 178.68042 * 14 13 11 44 44 H 1.09000 * 109.59024 * 174.41538 * 15 14 13 45 45 H 1.09000 * 109.58891 * 294.70381 * 15 14 13 46 46 H 0.97002 * 119.99868 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.56065 * 293.78447 * 25 16 15 48 48 H 1.09000 * 109.61541 * 173.35777 * 25 16 15 49 49 H 1.09003 * 109.47238 * 266.72955 * 27 26 6 50 50 H 1.08991 * 109.47151 * 26.73399 * 27 26 6 51 51 H 1.09003 * 109.47061 * 146.73093 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.2137 -0.1404 2.4926 6 6 2.6910 -1.1645 3.2921 7 6 3.0469 -1.0796 4.7175 8 8 3.5473 -2.0365 5.2774 9 7 2.8182 0.0583 5.4025 10 6 3.2648 0.1787 6.7926 11 6 2.8833 1.5583 7.3331 12 1 1.8122 1.7155 7.2057 13 6 3.2385 1.6408 8.8194 14 6 2.8274 3.0087 9.3689 15 6 3.5973 4.1052 8.6262 16 7 3.3762 3.9435 7.1827 17 6 2.9200 4.9891 6.4251 18 1 2.2977 4.8002 5.5630 19 6 3.2576 6.2918 6.7655 20 7 4.1773 6.5158 7.6800 21 14 2.4067 7.7270 5.9256 22 1 0.9458 7.6559 6.1833 23 1 2.9429 9.0034 6.4623 24 1 2.6548 7.6625 4.4629 25 6 3.6533 2.6385 6.5669 26 7 2.7626 -2.2705 2.4936 27 6 3.2159 -3.5952 2.9249 28 7 2.3766 -1.9707 1.3059 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.0261 0.8829 2.7820 37 1 2.3581 0.7975 4.9752 38 1 2.7863 -0.5925 7.3960 39 1 4.3470 0.0567 6.8384 40 1 2.7104 0.8574 9.3630 41 1 4.3132 1.5078 8.9438 42 1 1.7569 3.1528 9.2222 43 1 3.0592 3.0581 10.4327 44 1 3.2369 5.0838 8.9436 45 1 4.6611 4.0184 8.8471 46 1 4.4135 7.4262 7.9175 47 1 4.7221 2.4307 6.6173 48 1 3.3297 2.6490 5.5260 49 1 4.2821 -3.6981 2.7228 50 1 3.0358 -3.7107 3.9936 51 1 2.6670 -4.3626 2.3790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359427001.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:46 Heat of formation + Delta-G solvation = 40.036398 kcal Electronic energy + Delta-G solvation = -29378.928875 eV Core-core repulsion = 25507.763006 eV Total energy + Delta-G solvation = -3871.165869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.69279 -39.53423 -37.79961 -36.12739 -34.94197 -33.17698 -32.44310 -31.39688 -30.45737 -30.00730 -27.33881 -26.89844 -25.75009 -25.28889 -23.41238 -22.50977 -22.03435 -20.99525 -20.47285 -19.53051 -18.98242 -17.83073 -16.68562 -16.46238 -16.28106 -15.67173 -15.18924 -14.92238 -14.69181 -14.35990 -14.20670 -14.08478 -13.77243 -13.64744 -13.45505 -13.38779 -12.82800 -12.74314 -12.63563 -12.37718 -12.27916 -12.23224 -12.19724 -11.57729 -11.35636 -11.34158 -11.28733 -10.98573 -10.76118 -10.64572 -10.56171 -10.28667 -10.22551 -10.13382 -9.94462 -9.61684 -9.47219 -9.31667 -9.00314 -8.95566 -8.50242 -6.64921 -5.81197 -3.30068 1.16380 2.24867 2.42623 3.13068 3.19780 3.35357 3.41298 3.41510 4.19957 4.43978 4.47458 4.71204 4.84216 4.97683 5.03246 5.04435 5.15991 5.22997 5.26470 5.34148 5.39067 5.41554 5.43006 5.51161 5.52943 5.59174 5.72270 5.77967 5.78593 5.87563 5.88658 5.95462 6.10022 6.17790 6.18906 6.26495 6.33551 6.35864 6.41408 6.56367 6.60334 6.67268 6.73837 6.83232 6.92864 7.38664 7.40404 7.67940 7.75255 7.93550 8.07341 8.44462 9.19107 9.80467 10.38713 11.26618 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.003271 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.484471 B = 8559.163489 C =10910.542328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.009 4.009 3 C -0.146 4.146 4 C 0.033 3.967 5 C -0.179 4.179 6 C -0.036 4.036 7 C 0.590 3.410 8 O -0.548 6.548 9 N -0.705 5.705 10 C 0.129 3.871 11 C -0.119 4.119 12 H 0.074 0.926 13 C -0.099 4.099 14 C -0.142 4.142 15 C 0.170 3.830 16 N -0.591 5.591 17 C -0.256 4.256 18 H 0.063 0.937 19 C 0.006 3.994 20 N -0.904 5.904 21 Si 0.904 3.096 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.154 3.846 26 N -0.260 5.260 27 C 0.087 3.913 28 N -0.279 5.279 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.162 0.838 37 H 0.407 0.593 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.087 0.913 45 H 0.017 0.983 46 H 0.255 0.745 47 H 0.019 0.981 48 H 0.050 0.950 49 H 0.083 0.917 50 H 0.111 0.889 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 -15.490 -9.313 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.204 4.204 4 C -0.124 4.124 5 C -0.208 4.208 6 C -0.164 4.164 7 C 0.375 3.625 8 O -0.427 6.427 9 N -0.356 5.356 10 C 0.005 3.995 11 C -0.139 4.139 12 H 0.092 0.908 13 C -0.137 4.137 14 C -0.182 4.182 15 C 0.044 3.956 16 N -0.313 5.313 17 C -0.386 4.386 18 H 0.081 0.919 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.734 3.266 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.027 3.973 26 N -0.047 5.047 27 C -0.053 4.053 28 N -0.112 5.112 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.179 0.821 37 H 0.243 0.757 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.035 0.965 46 H 0.065 0.935 47 H 0.037 0.963 48 H 0.069 0.931 49 H 0.102 0.898 50 H 0.129 0.871 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.461 -17.113 -9.394 20.025 hybrid contribution -0.546 1.775 -0.071 1.858 sum -5.006 -15.338 -9.465 18.706 Atomic orbital electron populations 1.21819 0.93961 1.01982 1.02237 1.19419 0.95607 0.95089 0.92766 1.21851 1.01503 0.94490 1.02534 1.21936 1.04011 0.90062 0.96361 1.22138 1.05937 0.99729 0.93004 1.21411 1.11562 0.89231 0.94190 1.16893 0.78493 0.83338 0.83775 1.90760 1.45201 1.36554 1.70210 1.45770 1.59141 1.16224 1.14438 1.21552 0.99965 0.98117 0.79828 1.21980 1.01652 0.93292 0.97007 0.90754 1.21334 1.00664 0.97770 0.93948 1.22186 1.01076 0.96234 0.98658 1.20805 0.95494 0.96777 0.82525 1.43983 1.76860 1.06961 1.03518 1.19105 1.24296 0.85203 1.09967 0.91902 1.25160 0.96938 0.98107 0.99080 1.69971 1.31082 1.19742 1.33979 0.86358 0.79178 0.81873 0.79230 1.20955 1.21606 1.20808 1.20912 0.95554 0.86025 0.94843 1.45504 1.44675 1.09493 1.04996 1.22328 1.01169 0.78648 1.03197 1.73098 1.17263 1.17961 1.02855 0.92192 0.92001 0.92695 0.89979 0.92293 0.91915 0.91819 0.82080 0.75738 0.91573 0.91253 0.93433 0.92445 0.92779 0.93193 0.89459 0.96459 0.93517 0.96325 0.93143 0.89838 0.87090 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.18 37.16 0.34 -0.84 16 2 C -0.01 -0.08 3.38 -91.78 -0.31 -0.39 16 3 C -0.15 -1.26 8.79 37.16 0.33 -0.94 16 4 C 0.03 0.39 6.13 -82.47 -0.51 -0.11 16 5 C -0.18 -2.16 9.65 -38.98 -0.38 -2.53 16 6 C -0.04 -0.47 6.96 -82.06 -0.57 -1.04 16 7 C 0.59 8.32 7.78 -12.64 -0.10 8.22 16 8 O -0.55 -8.80 14.70 5.25 0.08 -8.72 16 9 N -0.70 -9.22 5.31 -61.47 -0.33 -9.55 16 10 C 0.13 1.77 5.07 -4.04 -0.02 1.75 16 11 C -0.12 -1.86 2.37 -90.50 -0.21 -2.07 16 12 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.10 -1.56 5.17 -26.69 -0.14 -1.70 16 14 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 15 C 0.17 3.92 5.25 -3.71 -0.02 3.90 16 16 N -0.59 -14.11 2.99 -172.31 -0.51 -14.62 16 17 C -0.26 -6.73 9.58 -15.06 -0.14 -6.87 16 18 H 0.06 1.60 7.85 -52.49 -0.41 1.18 16 19 C 0.01 0.16 5.05 -17.43 -0.09 0.08 16 20 N -0.90 -25.62 11.06 55.49 0.61 -25.01 16 21 Si 0.90 21.05 29.57 -169.99 -5.03 16.02 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.15 2.97 5.60 -3.71 -0.02 2.95 16 26 N -0.26 -3.32 3.75 -63.88 -0.24 -3.56 16 27 C 0.09 0.84 10.86 59.85 0.65 1.49 16 28 N -0.28 -3.67 11.90 33.64 0.40 -3.27 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.56 7.37 -51.93 -0.38 0.17 16 36 H 0.16 1.65 7.08 -52.49 -0.37 1.28 16 37 H 0.41 4.85 6.77 -40.82 -0.28 4.58 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 2.27 6.11 -51.93 -0.32 1.96 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.05 0.93 7.14 -51.93 -0.37 0.56 16 49 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.11 1.14 6.25 -51.93 -0.32 0.82 16 51 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 402.78 15.07 6.07 6.07 Total: -1.00 -31.16 402.78 -9.07 -40.23 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.78 Total: 3.27 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.35 Total: -0.86 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.07 Total: -56.01 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.16 -9.07 -40.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359427001.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.269 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds