Wall clock time and date at job start Tue Mar 31 2020 19:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46938 * 2 1 4 4 C 1.50690 * 109.47383 * 120.00167 * 2 1 3 5 5 C 1.39681 * 126.06956 * 275.00119 * 4 2 1 6 6 C 1.38410 * 105.35886 * 180.24538 * 5 4 2 7 7 C 1.47158 * 126.88381 * 179.77358 * 6 5 4 8 8 O 1.21631 * 119.99899 * 185.32391 * 7 6 5 9 9 N 1.34773 * 119.99986 * 5.32524 * 7 6 5 10 10 C 1.46499 * 119.99951 * 184.65989 * 9 7 6 11 11 C 1.53005 * 109.47042 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.50051 * 54.99699 * 11 10 9 13 13 C 1.53042 * 109.49736 * 175.06398 * 11 10 9 14 14 C 1.53039 * 109.53965 * 181.31277 * 13 11 10 15 15 C 1.53192 * 109.31465 * 298.63697 * 14 13 11 16 16 N 1.46927 * 108.77444 * 54.63181 * 15 14 13 17 17 C 1.36946 * 120.63229 * 126.39207 * 16 15 14 18 18 H 1.07998 * 120.00123 * 211.47702 * 17 16 15 19 19 C 1.38806 * 119.99601 * 31.47646 * 17 16 15 20 20 N 1.31625 * 120.00288 * 10.63167 * 19 17 16 21 21 Si 1.86795 * 120.00151 * 190.62888 * 19 17 16 22 22 H 1.48510 * 109.46952 * 60.00118 * 21 19 17 23 23 H 1.48494 * 109.47739 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47534 * 300.00666 * 21 19 17 25 25 C 1.46935 * 118.76472 * 306.41204 * 16 15 14 26 26 N 1.36601 * 106.22909 * 359.64760 * 6 5 4 27 27 C 1.46504 * 125.18660 * 180.13652 * 26 6 5 28 28 N 1.28438 * 109.62230 * 0.36761 * 26 6 5 29 29 H 1.09003 * 109.47182 * 299.99622 * 1 2 3 30 30 H 1.08997 * 109.47640 * 59.99916 * 1 2 3 31 31 H 1.08998 * 109.47394 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46770 * 240.00197 * 2 1 3 33 33 H 1.09005 * 109.46996 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47568 * 300.00168 * 3 2 1 35 35 H 1.08997 * 109.47229 * 60.00478 * 3 2 1 36 36 H 1.07992 * 127.32161 * 359.97438 * 5 4 2 37 37 H 0.96997 * 120.00143 * 4.65658 * 9 7 6 38 38 H 1.08997 * 109.47100 * 299.99762 * 10 9 7 39 39 H 1.08999 * 109.47396 * 59.99871 * 10 9 7 40 40 H 1.08996 * 109.46203 * 301.33470 * 13 11 10 41 41 H 1.08999 * 109.45751 * 61.30813 * 13 11 10 42 42 H 1.09001 * 109.49554 * 58.58279 * 14 13 11 43 43 H 1.08992 * 109.50330 * 178.68042 * 14 13 11 44 44 H 1.09000 * 109.59024 * 174.41538 * 15 14 13 45 45 H 1.09000 * 109.58891 * 294.70381 * 15 14 13 46 46 H 0.97002 * 119.99868 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.56065 * 293.78447 * 25 16 15 48 48 H 1.09000 * 109.61541 * 173.35777 * 25 16 15 49 49 H 1.09003 * 109.47238 * 266.72955 * 27 26 6 50 50 H 1.08991 * 109.47151 * 26.73399 * 27 26 6 51 51 H 1.09003 * 109.47061 * 146.73093 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 6 2.2137 -0.1404 2.4926 6 6 2.6910 -1.1645 3.2921 7 6 3.0469 -1.0796 4.7175 8 8 3.5473 -2.0365 5.2774 9 7 2.8182 0.0583 5.4025 10 6 3.2648 0.1787 6.7926 11 6 2.8833 1.5583 7.3331 12 1 1.8122 1.7155 7.2057 13 6 3.2385 1.6408 8.8194 14 6 2.8274 3.0087 9.3689 15 6 3.5973 4.1052 8.6262 16 7 3.3762 3.9435 7.1827 17 6 2.9200 4.9891 6.4251 18 1 2.2977 4.8002 5.5630 19 6 3.2576 6.2918 6.7655 20 7 4.1773 6.5158 7.6800 21 14 2.4067 7.7270 5.9256 22 1 0.9458 7.6559 6.1833 23 1 2.9429 9.0034 6.4623 24 1 2.6548 7.6625 4.4629 25 6 3.6533 2.6385 6.5669 26 7 2.7626 -2.2705 2.4936 27 6 3.2159 -3.5952 2.9249 28 7 2.3766 -1.9707 1.3059 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.0261 0.8829 2.7820 37 1 2.3581 0.7975 4.9752 38 1 2.7863 -0.5925 7.3960 39 1 4.3470 0.0567 6.8384 40 1 2.7104 0.8574 9.3630 41 1 4.3132 1.5078 8.9438 42 1 1.7569 3.1528 9.2222 43 1 3.0592 3.0581 10.4327 44 1 3.2369 5.0838 8.9436 45 1 4.6611 4.0184 8.8471 46 1 4.4135 7.4262 7.9175 47 1 4.7221 2.4307 6.6173 48 1 3.3297 2.6490 5.5260 49 1 4.2821 -3.6981 2.7228 50 1 3.0358 -3.7107 3.9936 51 1 2.6670 -4.3626 2.3790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359427001.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:45 Heat of formation + Delta-G solvation = 21.829879 kcal Electronic energy + Delta-G solvation = -29379.718369 eV Core-core repulsion = 25507.763006 eV Total energy + Delta-G solvation = -3871.955363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.62562 -40.68169 -39.27996 -36.92900 -36.27801 -34.76270 -33.33074 -32.58398 -32.24456 -31.31339 -28.03713 -27.69310 -27.26381 -26.92439 -24.44010 -23.79070 -23.38324 -22.34803 -21.49514 -20.79895 -20.15652 -18.86471 -18.50913 -17.40856 -17.31461 -16.84215 -16.65204 -16.35291 -15.75990 -15.65705 -15.27493 -15.11003 -14.98948 -14.94567 -14.67359 -14.46908 -14.14581 -13.97071 -13.75324 -13.60707 -13.44566 -13.39942 -13.00841 -12.87929 -12.77679 -12.48877 -12.31051 -12.29886 -12.14762 -12.00812 -11.96032 -11.80237 -11.55311 -11.47526 -11.39268 -11.12926 -11.04804 -10.50828 -10.37269 -10.01748 -9.87466 -8.58826 -7.82785 -5.34330 0.16303 1.35204 1.50329 1.50608 1.51825 1.58238 2.08393 2.18277 2.53503 3.33379 3.36514 3.48004 3.62551 3.89776 4.00898 4.02949 4.08636 4.14013 4.26320 4.30214 4.32717 4.43692 4.45839 4.56004 4.58830 4.60179 4.64271 4.73374 4.78358 4.89064 4.90043 4.92820 5.03209 5.05925 5.07266 5.13902 5.20244 5.21844 5.33930 5.38159 5.42669 5.45949 5.46594 5.53068 5.61201 5.70036 5.71565 5.83451 6.34124 6.45034 6.95255 7.05003 7.19703 7.89489 8.42483 9.22722 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.003271 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.484471 B = 8559.163489 C =10910.542328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.008 4.008 3 C -0.144 4.144 4 C 0.026 3.974 5 C -0.178 4.178 6 C -0.053 4.053 7 C 0.592 3.408 8 O -0.570 6.570 9 N -0.700 5.700 10 C 0.140 3.860 11 C -0.101 4.101 12 H 0.078 0.922 13 C -0.096 4.096 14 C -0.131 4.131 15 C 0.173 3.827 16 N -0.609 5.609 17 C -0.262 4.262 18 H 0.071 0.929 19 C -0.050 4.050 20 N -0.938 5.938 21 Si 0.966 3.034 22 H -0.276 1.276 23 H -0.298 1.298 24 H -0.273 1.273 25 C 0.152 3.848 26 N -0.266 5.266 27 C 0.082 3.918 28 N -0.293 5.293 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.176 0.824 37 H 0.413 0.587 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.051 0.949 45 H -0.009 1.009 46 H 0.248 0.752 47 H 0.006 0.994 48 H 0.057 0.943 49 H 0.091 0.909 50 H 0.104 0.896 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 -16.538 -10.252 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 C -0.202 4.202 4 C -0.130 4.130 5 C -0.207 4.207 6 C -0.181 4.181 7 C 0.378 3.622 8 O -0.451 6.451 9 N -0.350 5.350 10 C 0.016 3.984 11 C -0.122 4.122 12 H 0.096 0.904 13 C -0.134 4.134 14 C -0.170 4.170 15 C 0.048 3.952 16 N -0.332 5.332 17 C -0.392 4.392 18 H 0.089 0.911 19 C -0.245 4.245 20 N -0.584 5.584 21 Si 0.795 3.205 22 H -0.202 1.202 23 H -0.225 1.225 24 H -0.199 1.199 25 C 0.026 3.974 26 N -0.053 5.053 27 C -0.057 4.057 28 N -0.127 5.127 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.194 0.806 37 H 0.250 0.750 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.009 0.991 46 H 0.057 0.943 47 H 0.024 0.976 48 H 0.076 0.924 49 H 0.109 0.891 50 H 0.122 0.878 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.933 -18.189 -10.348 21.751 hybrid contribution -0.059 2.063 0.187 2.072 sum -5.992 -16.126 -10.161 19.980 Atomic orbital electron populations 1.21790 0.93010 1.01774 1.03007 1.19520 0.96314 0.95228 0.91734 1.21843 1.00928 0.94081 1.03299 1.22404 1.03503 0.89861 0.97225 1.22381 1.05241 1.00195 0.92881 1.21428 1.12669 0.90048 0.93986 1.16972 0.78045 0.83110 0.84068 1.90747 1.46287 1.37315 1.70727 1.45692 1.58912 1.16234 1.14207 1.21386 0.99741 0.97009 0.80270 1.21736 1.01036 0.92809 0.96577 0.90364 1.21330 1.01059 0.96997 0.94062 1.22008 1.00013 0.95825 0.99133 1.20622 0.94500 0.96967 0.83139 1.44250 1.77039 1.08054 1.03891 1.19516 1.23690 0.86062 1.09930 0.91101 1.25911 0.97878 1.00611 1.00102 1.70152 1.32925 1.19566 1.35790 0.85359 0.78280 0.78433 0.78472 1.20183 1.22495 1.19896 1.21042 0.95412 0.85182 0.95757 1.45795 1.44518 1.10173 1.04840 1.22487 1.01983 0.78143 1.03053 1.73091 1.17775 1.18674 1.03137 0.92417 0.90233 0.93378 0.89752 0.93171 0.90302 0.91921 0.80634 0.75011 0.90213 0.91837 0.90053 0.92580 0.92870 0.91391 0.93051 0.99053 0.94270 0.97619 0.92405 0.89062 0.87765 0.87111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.18 71.98 0.66 -1.38 16 2 C -0.01 -0.13 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -2.23 8.79 71.98 0.63 -1.60 16 4 C 0.03 0.59 6.13 43.05 0.26 0.86 16 5 C -0.18 -4.05 9.65 22.66 0.22 -3.83 16 6 C -0.05 -1.35 6.96 40.79 0.28 -1.06 16 7 C 0.59 15.95 7.78 86.59 0.67 16.62 16 8 O -0.57 -17.66 14.70 -4.13 -0.06 -17.72 16 9 N -0.70 -17.02 5.31 -466.64 -2.48 -19.50 16 10 C 0.14 3.52 5.07 86.38 0.44 3.96 16 11 C -0.10 -2.95 2.37 -10.71 -0.03 -2.97 16 12 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 13 C -0.10 -2.80 5.17 30.62 0.16 -2.64 16 14 C -0.13 -4.60 6.08 30.67 0.19 -4.41 16 15 C 0.17 8.16 5.25 86.36 0.45 8.61 16 16 N -0.61 -29.18 2.99 -699.08 -2.09 -31.27 16 17 C -0.26 -13.75 9.58 84.03 0.80 -12.95 16 18 H 0.07 3.53 7.85 -2.91 -0.02 3.51 16 19 C -0.05 -2.71 5.05 84.86 0.43 -2.28 16 20 N -0.94 -54.81 11.06 21.65 0.24 -54.57 16 21 Si 0.97 43.53 29.57 68.60 2.03 45.56 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.15 5.76 5.60 86.36 0.48 6.24 16 26 N -0.27 -6.55 3.75 -356.01 -1.33 -7.89 16 27 C 0.08 1.52 10.86 127.77 1.39 2.91 16 28 N -0.29 -7.41 11.90 -47.50 -0.57 -7.97 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.06 0.98 7.37 -2.39 -0.02 0.96 16 36 H 0.18 3.30 7.08 -2.91 -0.02 3.28 16 37 H 0.41 9.04 6.77 -92.71 -0.63 8.42 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.05 2.77 6.11 -2.39 -0.01 2.75 16 45 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 46 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 47 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.06 2.07 7.14 -2.39 -0.02 2.05 16 49 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.10 2.07 6.25 -2.39 -0.01 2.06 16 51 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -67.75 402.78 3.04 -64.71 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.28 Total: 22.74 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 7.01 Total: 5.91 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -6.23 Total: -121.20 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.06 Total: -17.72 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -67.75 3.04 -64.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359427001.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.544 kcal (2) G-P(sol) polarization free energy of solvation -67.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds