Wall clock time and date at job start Tue Mar 31 2020 19:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47202 * 2 1 4 4 C 1.50699 * 109.46833 * 119.99867 * 2 1 3 5 5 C 1.39682 * 126.06867 * 274.99906 * 4 2 1 6 6 C 1.38398 * 105.35870 * 179.97438 * 5 4 2 7 7 C 1.47166 * 126.88447 * 180.02562 * 6 5 4 8 8 O 1.21631 * 120.00029 * 174.71821 * 7 6 5 9 9 N 1.34775 * 119.99956 * 354.72748 * 7 6 5 10 10 C 1.46497 * 120.00204 * 184.57681 * 9 7 6 11 11 C 1.53003 * 109.47156 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.49407 * 305.05766 * 11 10 9 13 13 C 1.53048 * 109.49490 * 184.99782 * 11 10 9 14 14 C 1.53034 * 109.53560 * 178.68206 * 13 11 10 15 15 C 1.53194 * 109.31533 * 61.36497 * 14 13 11 16 16 N 1.46928 * 108.77164 * 305.36477 * 15 14 13 17 17 C 1.36942 * 120.62924 * 233.58095 * 16 15 14 18 18 H 1.08001 * 119.99774 * 148.66111 * 17 16 15 19 19 C 1.38806 * 120.00057 * 328.67157 * 17 16 15 20 20 N 1.31620 * 119.99943 * 349.15162 * 19 17 16 21 21 Si 1.86806 * 120.00075 * 169.15602 * 19 17 16 22 22 H 1.48503 * 109.46964 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47185 * 119.99417 * 21 19 17 24 24 H 1.48506 * 109.46848 * 239.99815 * 21 19 17 25 25 C 1.46927 * 118.74014 * 53.60819 * 16 15 14 26 26 N 1.36603 * 106.23648 * 359.97438 * 6 5 4 27 27 C 1.46496 * 125.19430 * 179.97438 * 26 6 5 28 28 N 1.28442 * 109.61568 * 0.02562 * 26 6 5 29 29 H 1.09001 * 109.46975 * 60.00184 * 1 2 3 30 30 H 1.08999 * 109.47492 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47275 * 300.00448 * 1 2 3 32 32 H 1.08997 * 109.47355 * 239.99799 * 2 1 3 33 33 H 1.08995 * 109.47195 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47005 * 299.99798 * 3 2 1 35 35 H 1.08997 * 109.47129 * 59.99661 * 3 2 1 36 36 H 1.08001 * 127.31551 * 0.23574 * 5 4 2 37 37 H 0.97006 * 119.99711 * 4.56641 * 9 7 6 38 38 H 1.09008 * 109.46869 * 299.99450 * 10 9 7 39 39 H 1.08994 * 109.47239 * 59.99082 * 10 9 7 40 40 H 1.09000 * 109.45572 * 298.70232 * 13 11 10 41 41 H 1.08994 * 109.45876 * 58.67276 * 13 11 10 42 42 H 1.08996 * 109.49843 * 181.31361 * 14 13 11 43 43 H 1.09007 * 109.49642 * 301.38141 * 14 13 11 44 44 H 1.08998 * 109.58361 * 65.14830 * 15 14 13 45 45 H 1.08995 * 109.58731 * 185.57939 * 15 14 13 46 46 H 0.97009 * 119.99870 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.58434 * 186.59741 * 25 16 15 48 48 H 1.09001 * 109.58611 * 66.17880 * 25 16 15 49 49 H 1.08995 * 109.46880 * 93.20955 * 27 26 6 50 50 H 1.09001 * 109.47257 * 213.20572 * 27 26 6 51 51 H 1.09004 * 109.47204 * 333.21084 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2136 -0.1404 2.4927 6 6 2.6847 -1.1659 3.2938 7 6 3.0333 -1.0828 4.7212 8 8 3.3462 -2.0880 5.3303 9 7 3.0056 0.1071 5.3535 10 6 3.4484 0.2070 6.7463 11 6 3.3172 1.6557 7.2206 12 1 3.8632 2.3113 6.5423 13 6 3.8950 1.7855 8.6318 14 6 3.7941 3.2408 9.0943 15 6 2.3209 3.6587 9.1347 16 7 1.7199 3.4005 7.8190 17 6 1.0612 4.3946 7.1457 18 1 1.0655 4.4099 6.0658 19 6 0.3881 5.3825 7.8512 20 7 0.1993 5.2530 9.1473 21 14 -0.2499 6.8958 6.9610 22 1 0.0895 6.8013 5.5184 23 1 -1.7242 6.9781 7.1187 24 1 0.3784 8.1113 7.5383 25 6 1.8386 2.0555 7.2397 26 7 2.7602 -2.2710 2.4945 27 6 3.2126 -3.5959 2.9260 28 7 2.3751 -1.9710 1.3065 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.0223 0.8822 2.7829 37 1 2.6926 0.8975 4.8862 38 1 2.8302 -0.4376 7.3712 39 1 4.4898 -0.1062 6.8198 40 1 3.3331 1.1478 9.3143 41 1 4.9407 1.4782 8.6257 42 1 4.2269 3.3370 10.0900 43 1 4.3357 3.8820 8.3987 44 1 1.7976 3.0795 9.8954 45 1 2.2486 4.7211 9.3673 46 1 -0.2715 5.9433 9.6403 47 1 1.4481 2.0602 6.2221 48 1 1.2759 1.3456 7.8460 49 1 2.3524 -4.1920 3.2308 50 1 3.7243 -4.0917 2.1011 51 1 3.8975 -3.4898 3.7673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359427018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:51 Heat of formation + Delta-G solvation = 21.615214 kcal Electronic energy + Delta-G solvation = -29346.962367 eV Core-core repulsion = 25474.997695 eV Total energy + Delta-G solvation = -3871.964671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.62461 -40.68144 -39.28318 -36.92762 -36.28014 -34.76609 -33.33098 -32.58503 -32.24911 -31.31147 -28.04239 -27.68884 -27.27132 -26.92580 -24.44207 -23.79427 -23.38353 -22.34789 -21.49204 -20.80693 -20.15000 -18.86350 -18.51755 -17.41083 -17.30657 -16.85090 -16.66002 -16.35503 -15.82430 -15.54358 -15.32668 -15.09721 -15.00063 -14.95859 -14.62834 -14.46160 -14.19338 -13.97952 -13.75702 -13.60076 -13.48283 -13.35982 -13.00071 -12.87866 -12.83786 -12.52302 -12.30589 -12.23810 -12.15073 -12.00469 -11.92385 -11.80567 -11.55576 -11.47648 -11.39364 -11.12822 -11.04188 -10.53200 -10.37553 -10.01533 -9.87546 -8.59670 -7.83372 -5.34790 0.16507 1.35094 1.48558 1.50455 1.50832 1.60271 2.09534 2.17316 2.52804 3.32912 3.36738 3.48065 3.62280 3.89893 4.00691 4.02824 4.08530 4.14111 4.26255 4.30349 4.32864 4.43840 4.45738 4.55762 4.59013 4.60129 4.64246 4.73381 4.78502 4.88944 4.89786 4.92588 5.02987 5.05086 5.08256 5.13818 5.20167 5.21775 5.33926 5.38027 5.42509 5.46056 5.46971 5.53355 5.61199 5.70025 5.71638 5.83077 6.34189 6.44620 6.95459 7.05189 7.19123 7.88869 8.41857 9.22321 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.003215 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.760339 B = 8708.328143 C =10978.432559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.008 4.008 3 C -0.142 4.142 4 C 0.026 3.974 5 C -0.178 4.178 6 C -0.053 4.053 7 C 0.592 3.408 8 O -0.571 6.571 9 N -0.699 5.699 10 C 0.139 3.861 11 C -0.101 4.101 12 H 0.079 0.921 13 C -0.096 4.096 14 C -0.131 4.131 15 C 0.173 3.827 16 N -0.610 5.610 17 C -0.259 4.259 18 H 0.072 0.928 19 C -0.051 4.051 20 N -0.938 5.938 21 Si 0.966 3.034 22 H -0.261 1.261 23 H -0.295 1.295 24 H -0.293 1.293 25 C 0.151 3.849 26 N -0.266 5.266 27 C 0.082 3.918 28 N -0.294 5.294 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.177 0.823 37 H 0.413 0.587 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.053 0.947 44 H -0.009 1.009 45 H 0.051 0.949 46 H 0.248 0.752 47 H 0.057 0.943 48 H 0.005 0.995 49 H 0.091 0.909 50 H 0.111 0.889 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.605 -12.212 -15.329 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.130 4.130 5 C -0.207 4.207 6 C -0.181 4.181 7 C 0.378 3.622 8 O -0.451 6.451 9 N -0.350 5.350 10 C 0.016 3.984 11 C -0.121 4.121 12 H 0.098 0.902 13 C -0.135 4.135 14 C -0.170 4.170 15 C 0.048 3.952 16 N -0.333 5.333 17 C -0.389 4.389 18 H 0.089 0.911 19 C -0.246 4.246 20 N -0.584 5.584 21 Si 0.794 3.206 22 H -0.185 1.185 23 H -0.222 1.222 24 H -0.220 1.220 25 C 0.026 3.974 26 N -0.053 5.053 27 C -0.057 4.057 28 N -0.127 5.127 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.195 0.805 37 H 0.250 0.750 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.009 0.991 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.023 0.977 49 H 0.109 0.891 50 H 0.129 0.871 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.910 -13.954 -15.347 22.199 hybrid contribution -0.969 1.794 0.536 2.108 sum 6.941 -12.161 -14.811 20.382 Atomic orbital electron populations 1.21807 0.93403 1.01658 1.02927 1.19525 0.95996 0.95504 0.91761 1.21832 1.01128 0.93804 1.03258 1.22414 1.03522 0.89794 0.97269 1.22384 1.05415 1.00220 0.92669 1.21423 1.12926 0.89906 0.93855 1.16983 0.77138 0.83768 0.84341 1.90749 1.50806 1.35681 1.67875 1.45694 1.65182 1.09896 1.14275 1.21389 1.00323 0.96549 0.80164 1.21732 0.97895 0.94345 0.98149 0.90248 1.21332 1.01044 0.96231 0.94846 1.22007 0.97530 0.96786 1.00645 1.20630 0.89869 0.99117 0.85623 1.44272 1.62756 1.06759 1.19478 1.19587 1.24536 1.03784 0.91042 0.91066 1.25912 0.98763 1.03263 0.96664 1.70167 1.45481 1.34680 1.08115 0.85225 0.77111 0.79420 0.78834 1.18480 1.22243 1.21969 1.21039 0.93756 0.85849 0.96774 1.45790 1.44578 1.10153 1.04824 1.22485 1.02297 0.78021 1.02876 1.73093 1.17762 1.18549 1.03297 0.90149 0.93581 0.92694 0.89611 0.92680 0.90356 0.91989 0.80548 0.75004 0.91913 0.90133 0.92632 0.89992 0.91394 0.92791 0.99087 0.93030 0.94288 0.92483 0.97690 0.89093 0.87101 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.18 71.98 0.66 -1.53 16 2 C -0.01 -0.13 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -2.00 8.79 71.98 0.63 -1.37 16 4 C 0.03 0.58 6.13 43.05 0.26 0.85 16 5 C -0.18 -3.98 9.65 22.66 0.22 -3.76 16 6 C -0.05 -1.33 6.96 40.78 0.28 -1.05 16 7 C 0.59 15.93 7.79 86.59 0.67 16.60 16 8 O -0.57 -17.75 14.70 -4.13 -0.06 -17.81 16 9 N -0.70 -16.99 5.32 -466.63 -2.48 -19.48 16 10 C 0.14 3.51 5.07 86.38 0.44 3.95 16 11 C -0.10 -2.93 2.37 -10.72 -0.03 -2.95 16 12 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 13 C -0.10 -2.79 5.17 30.62 0.16 -2.63 16 14 C -0.13 -4.58 6.08 30.67 0.19 -4.39 16 15 C 0.17 8.15 5.25 86.36 0.45 8.61 16 16 N -0.61 -29.23 2.99 -699.11 -2.09 -31.32 16 17 C -0.26 -13.64 9.58 84.03 0.81 -12.83 16 18 H 0.07 3.57 7.85 -2.91 -0.02 3.55 16 19 C -0.05 -2.77 5.04 84.86 0.43 -2.34 16 20 N -0.94 -54.87 11.06 21.65 0.24 -54.63 16 21 Si 0.97 43.62 29.57 68.60 2.03 45.64 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 C 0.15 5.77 5.60 86.36 0.48 6.25 16 26 N -0.27 -6.53 3.75 -356.03 -1.33 -7.86 16 27 C 0.08 1.52 10.86 127.77 1.39 2.91 16 28 N -0.29 -7.36 11.90 -47.49 -0.57 -7.93 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.89 7.37 -2.39 -0.02 0.87 16 36 H 0.18 3.20 7.05 -2.91 -0.02 3.18 16 37 H 0.41 9.02 6.74 -92.70 -0.62 8.39 16 38 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 44 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.05 2.78 6.11 -2.39 -0.01 2.77 16 46 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 47 H 0.06 2.06 7.14 -2.39 -0.02 2.04 16 48 H 0.01 0.21 8.14 -2.39 -0.02 0.19 16 49 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.10 2.08 6.25 -2.39 -0.01 2.06 16 Total: -1.00 -68.12 402.73 3.03 -65.08 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.29 Total: 22.17 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 7.01 Total: 6.14 kcal Atomic # 7 Polarization: -114.99 SS G_CDS: -6.23 Total: -121.22 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.06 Total: -17.81 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.12 3.03 -65.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359427018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.698 kcal (2) G-P(sol) polarization free energy of solvation -68.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds