Wall clock time and date at job start Tue Mar 31 2020 18:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47010 * 2 1 4 4 N 1.31788 * 119.12609 * 269.72678 * 3 2 1 5 5 C 1.32334 * 120.82145 * 179.75722 * 4 3 2 6 6 C 1.38598 * 119.10516 * 0.51220 * 5 4 3 7 7 C 1.50694 * 120.80021 * 179.72888 * 6 5 4 8 8 N 1.46907 * 109.46979 * 270.01398 * 7 6 5 9 9 C 1.46899 * 110.99640 * 66.04835 * 8 7 6 10 10 C 1.50701 * 109.47250 * 63.29078 * 9 8 7 11 11 H 1.08005 * 119.99639 * 4.41442 * 10 9 8 12 12 C 1.37879 * 120.00171 * 184.41536 * 10 9 8 13 13 N 1.31521 * 119.99744 * 359.97438 * 12 10 9 14 14 Si 1.86790 * 120.00096 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47239 * 89.99484 * 14 12 10 16 16 H 1.48498 * 109.47194 * 209.99668 * 14 12 10 17 17 H 1.48505 * 109.47313 * 329.99926 * 14 12 10 18 18 C 1.46900 * 110.99987 * 190.00243 * 8 7 6 19 19 C 1.53001 * 109.46613 * 163.61171 * 18 8 7 20 20 N 1.46905 * 109.46657 * 181.59213 * 19 18 8 21 21 C 1.47014 * 110.99953 * 293.63332 * 20 19 18 22 22 C 1.53098 * 109.25661 * 177.60795 * 21 20 19 23 23 O 1.43012 * 109.25832 * 56.85347 * 22 21 20 24 24 C 1.43013 * 113.73721 * 301.32374 * 23 22 21 25 25 C 1.47017 * 110.99797 * 170.00386 * 20 19 18 26 26 C 1.38601 * 118.39539 * 359.73959 * 6 5 4 27 27 N 1.31803 * 119.12057 * 89.99728 * 3 2 1 28 28 H 1.09000 * 109.47372 * 299.99959 * 1 2 3 29 29 H 1.08999 * 109.46652 * 59.99964 * 1 2 3 30 30 H 1.08996 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47286 * 239.99678 * 2 1 3 32 32 H 1.09000 * 109.46852 * 119.99521 * 2 1 3 33 33 H 1.08003 * 120.44977 * 180.27579 * 5 4 3 34 34 H 1.08990 * 109.47479 * 30.01556 * 7 6 5 35 35 H 1.09003 * 109.47253 * 150.02025 * 7 6 5 36 36 H 1.09003 * 109.47014 * 183.29276 * 9 8 7 37 37 H 1.08996 * 109.47355 * 303.29105 * 9 8 7 38 38 H 0.96991 * 119.99701 * 180.02562 * 13 12 10 39 39 H 1.08995 * 109.47214 * 283.60925 * 18 8 7 40 40 H 1.09002 * 109.46918 * 43.61575 * 18 8 7 41 41 H 1.08994 * 109.47328 * 301.59094 * 19 18 8 42 42 H 1.08999 * 109.47263 * 61.59410 * 19 18 8 43 43 H 1.08999 * 109.50992 * 297.54720 * 21 20 19 44 44 H 1.09005 * 109.50556 * 57.67822 * 21 20 19 45 45 H 1.09008 * 109.50827 * 296.91478 * 22 21 20 46 46 H 1.09004 * 109.54029 * 176.80551 * 22 21 20 47 47 H 1.09003 * 109.51415 * 298.73944 * 24 23 22 48 48 H 1.09001 * 109.54402 * 178.62185 * 24 23 22 49 49 H 1.08999 * 109.50304 * 302.32405 * 25 20 19 50 50 H 1.08997 * 109.50873 * 62.41044 * 25 20 19 51 51 H 1.07996 * 120.44444 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2514 2.0238 -1.1512 5 6 2.6879 3.2724 -1.1904 6 6 2.9245 3.9415 0.0001 7 6 3.4277 5.3620 0.0000 8 7 4.8968 5.3611 0.0001 9 6 5.4228 4.8039 -1.2532 10 6 5.0073 5.6807 -2.4062 11 1 4.4732 6.6008 -2.2198 12 6 5.3087 5.3084 -3.6991 13 7 5.9594 4.1881 -3.9260 14 14 4.7943 6.3955 -5.1282 15 1 5.8742 7.3717 -5.4214 16 1 4.5488 5.5541 -6.3269 17 1 3.5507 7.1253 -4.7725 18 6 5.4240 6.7113 0.2383 19 6 6.8987 6.6201 0.6357 20 7 7.4158 7.9673 0.9109 21 6 7.4399 8.7824 -0.3123 22 6 7.9276 10.1926 0.0301 23 8 9.2134 10.1094 0.6505 24 6 9.2264 9.3234 1.8452 25 6 8.7519 7.9042 1.5212 26 6 2.6874 3.2726 1.1906 27 7 2.2461 2.0256 1.1514 28 1 -0.3634 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.8611 3.7622 -2.1373 34 1 3.0648 5.8760 -0.8899 35 1 3.0647 5.8761 0.8900 36 1 6.5109 4.7608 -1.2032 37 1 5.0258 3.7994 -1.3992 38 1 6.1718 3.9264 -4.8354 39 1 5.3289 7.3042 -0.6714 40 1 4.8599 7.1852 1.0416 41 1 6.9967 6.0038 1.5293 42 1 7.4675 6.1719 -0.1789 43 1 8.1156 8.3298 -1.0381 44 1 6.4359 8.8367 -0.7333 45 1 7.2231 10.6652 0.7146 46 1 8.0014 10.7845 -0.8823 47 1 8.5597 9.7706 2.5825 48 1 10.2394 9.2857 2.2460 49 1 8.7056 7.3175 2.4386 50 1 9.4483 7.4369 0.8250 51 1 2.8610 3.7622 2.1374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414362671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:00 Heat of formation + Delta-G solvation = 8.318281 kcal Electronic energy + Delta-G solvation = -29519.051530 eV Core-core repulsion = 25646.510260 eV Total energy + Delta-G solvation = -3872.541270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.67661 -39.45775 -37.41232 -35.50578 -34.06015 -33.21826 -32.59949 -31.31553 -31.01630 -29.09641 -27.30215 -26.25291 -24.72937 -24.13735 -23.93111 -23.55305 -22.23953 -21.03775 -20.24531 -19.61123 -17.29420 -16.67401 -16.44870 -16.30073 -16.07849 -15.30942 -15.12377 -14.99425 -14.78848 -14.51181 -14.35031 -14.08534 -13.96079 -13.75059 -13.51141 -13.06864 -12.93795 -12.69384 -12.60627 -12.23212 -12.12205 -11.76559 -11.60060 -11.34855 -11.27105 -11.19979 -11.11037 -11.00385 -10.79615 -10.60400 -10.58450 -10.33141 -10.25045 -10.14052 -10.01911 -9.76331 -9.58008 -8.78716 -8.73330 -8.56018 -8.18423 -7.33967 -6.15470 -4.26271 1.34754 1.59085 3.17837 3.26852 3.27246 3.79922 3.96085 4.17919 4.26350 4.28668 4.59220 4.91451 5.02341 5.11803 5.13824 5.15173 5.18302 5.23534 5.28546 5.30269 5.35978 5.37238 5.42373 5.52429 5.58308 5.64199 5.66294 5.82587 5.85125 5.87372 5.90709 6.01438 6.03410 6.06745 6.10510 6.20884 6.24176 6.34187 6.42864 6.57384 6.63367 6.91797 7.02999 7.10363 7.21694 7.23000 7.38938 7.45515 7.76044 7.86673 8.06951 8.14252 8.55146 8.83916 9.41350 10.89008 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.003322 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.715123 B = 8426.896292 C =10377.381475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.052 4.052 3 C 0.300 3.700 4 N -0.519 5.519 5 C 0.175 3.825 6 C -0.167 4.167 7 C 0.108 3.892 8 N -0.539 5.539 9 C 0.183 3.817 10 C -0.554 4.554 11 H 0.058 0.942 12 C 0.070 3.930 13 N -0.883 5.883 14 Si 0.883 3.117 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.066 3.934 19 C 0.065 3.935 20 N -0.537 5.537 21 C 0.015 3.985 22 C 0.065 3.935 23 O -0.390 6.390 24 C 0.066 3.934 25 C 0.018 3.982 26 C 0.153 3.847 27 N -0.527 5.527 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.176 0.824 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.092 0.908 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.041 0.959 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.517 3.266 10.504 11.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 C 0.032 3.968 4 N -0.233 5.233 5 C 0.009 3.991 6 C -0.171 4.171 7 C -0.021 4.021 8 N -0.263 5.263 9 C 0.057 3.943 10 C -0.593 4.593 11 H 0.076 0.924 12 C -0.134 4.134 13 N -0.521 5.521 14 Si 0.711 3.289 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.062 4.062 19 C -0.062 4.062 20 N -0.262 5.262 21 C -0.113 4.113 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 C -0.013 4.013 27 N -0.241 5.241 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.193 0.807 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.102 0.898 50 H 0.059 0.941 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.749 2.214 11.008 11.560 hybrid contribution 0.334 1.412 -2.193 2.629 sum -2.415 3.626 8.815 9.833 Atomic orbital electron populations 1.21668 0.94094 1.01939 1.02237 1.20250 0.96339 0.88802 1.03708 1.23050 0.92684 0.97077 0.83988 1.68276 1.14123 1.10743 1.30131 1.23468 0.87542 0.88744 0.99354 1.21576 1.00853 0.99633 0.95042 1.20692 0.89929 0.90347 1.01116 1.62460 1.04847 1.20535 1.38442 1.19836 0.95613 0.95505 0.83304 1.21630 1.38118 1.07642 0.91895 0.92420 1.24931 0.94808 0.94863 0.98793 1.69936 1.39086 1.21962 1.21090 0.86735 0.79043 0.80679 0.82469 1.20618 1.21038 1.19846 1.21851 0.93787 0.90773 0.99815 1.22021 0.96120 0.87527 1.00553 1.62192 1.22579 1.14869 1.26607 1.22819 1.02699 0.94035 0.91750 1.22690 0.84694 0.96026 0.97814 1.87952 1.30977 1.71432 1.40481 1.22633 1.01391 0.89943 0.87184 1.22737 0.90276 0.97838 1.00186 1.22987 0.90704 0.89363 0.98201 1.68164 1.14880 1.10562 1.30536 0.92539 0.92415 0.91891 0.89533 0.89716 0.80715 0.92332 0.91499 0.95453 0.94736 0.92627 0.93095 0.92285 0.90852 0.93825 0.93676 0.88977 0.92506 0.88714 0.92495 0.88863 0.89847 0.94070 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.90 37.16 0.37 -1.21 16 2 C -0.05 -0.68 6.37 -27.88 -0.18 -0.86 16 3 C 0.30 5.13 6.90 -157.19 -1.08 4.04 16 4 N -0.52 -9.92 10.33 -10.72 -0.11 -10.03 16 5 C 0.17 3.39 9.26 -17.20 -0.16 3.23 16 6 C -0.17 -2.92 4.90 -104.36 -0.51 -3.43 16 7 C 0.11 1.85 4.98 -4.98 -0.02 1.83 16 8 N -0.54 -10.21 4.65 -237.52 -1.11 -11.32 16 9 C 0.18 4.26 4.65 -4.98 -0.02 4.24 16 10 C -0.55 -13.56 7.30 -34.44 -0.25 -13.81 16 11 H 0.06 1.39 5.95 -52.48 -0.31 1.08 16 12 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 13 N -0.88 -24.53 13.29 55.43 0.74 -23.79 16 14 Si 0.88 20.14 29.54 -169.99 -5.02 15.12 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.07 1.14 4.70 -3.82 -0.02 1.12 16 19 C 0.07 1.08 4.98 -3.82 -0.02 1.06 16 20 N -0.54 -7.82 4.73 -234.30 -1.11 -8.93 16 21 C 0.02 0.22 5.44 -3.71 -0.02 0.20 16 22 C 0.06 0.81 7.01 37.21 0.26 1.07 16 23 O -0.39 -5.33 10.83 -35.23 -0.38 -5.72 16 24 C 0.07 0.75 7.01 37.21 0.26 1.01 16 25 C 0.02 0.23 5.65 -3.71 -0.02 0.21 16 26 C 0.15 2.47 11.01 -17.20 -0.19 2.28 16 27 N -0.53 -8.94 10.34 -10.72 -0.11 -9.05 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.18 3.66 7.99 -52.48 -0.42 3.24 16 34 H 0.06 1.09 6.57 -51.93 -0.34 0.75 16 35 H 0.07 0.97 7.82 -51.93 -0.41 0.56 16 36 H 0.03 0.71 6.73 -51.93 -0.35 0.36 16 37 H 0.03 0.89 5.96 -51.93 -0.31 0.58 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.05 0.97 4.57 -51.93 -0.24 0.73 16 40 H 0.06 0.93 7.80 -51.93 -0.41 0.52 16 41 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 42 H 0.04 0.84 6.81 -51.93 -0.35 0.49 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.09 1.38 6.42 -51.93 -0.33 1.05 16 45 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 50 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.16 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -28.67 399.20 -11.31 -39.98 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -8.51 Total: 5.03 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.71 Total: 2.69 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -1.70 Total: -63.12 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.38 Total: -5.72 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.67 -11.31 -39.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414362671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.294 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds