Wall clock time and date at job start Tue Mar 31 2020 18:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.47010 * 2 1 4 4 N 1.31788 * 119.12609 * 269.72678 * 3 2 1 5 5 C 1.32334 * 120.82145 * 179.75722 * 4 3 2 6 6 C 1.38598 * 119.10516 * 0.51220 * 5 4 3 7 7 C 1.50694 * 120.80021 * 179.72888 * 6 5 4 8 8 N 1.46907 * 109.46979 * 270.01398 * 7 6 5 9 9 C 1.46899 * 110.99640 * 66.04835 * 8 7 6 10 10 C 1.50701 * 109.47250 * 63.29078 * 9 8 7 11 11 H 1.08005 * 119.99639 * 4.41442 * 10 9 8 12 12 C 1.37879 * 120.00171 * 184.41536 * 10 9 8 13 13 N 1.31521 * 119.99744 * 359.97438 * 12 10 9 14 14 Si 1.86790 * 120.00096 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47239 * 89.99484 * 14 12 10 16 16 H 1.48498 * 109.47194 * 209.99668 * 14 12 10 17 17 H 1.48505 * 109.47313 * 329.99926 * 14 12 10 18 18 C 1.46900 * 110.99987 * 190.00243 * 8 7 6 19 19 C 1.53001 * 109.46613 * 163.61171 * 18 8 7 20 20 N 1.46905 * 109.46657 * 181.59213 * 19 18 8 21 21 C 1.47014 * 110.99953 * 293.63332 * 20 19 18 22 22 C 1.53098 * 109.25661 * 177.60795 * 21 20 19 23 23 O 1.43012 * 109.25832 * 56.85347 * 22 21 20 24 24 C 1.43013 * 113.73721 * 301.32374 * 23 22 21 25 25 C 1.47017 * 110.99797 * 170.00386 * 20 19 18 26 26 C 1.38601 * 118.39539 * 359.73959 * 6 5 4 27 27 N 1.31803 * 119.12057 * 89.99728 * 3 2 1 28 28 H 1.09000 * 109.47372 * 299.99959 * 1 2 3 29 29 H 1.08999 * 109.46652 * 59.99964 * 1 2 3 30 30 H 1.08996 * 109.47098 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47286 * 239.99678 * 2 1 3 32 32 H 1.09000 * 109.46852 * 119.99521 * 2 1 3 33 33 H 1.08003 * 120.44977 * 180.27579 * 5 4 3 34 34 H 1.08990 * 109.47479 * 30.01556 * 7 6 5 35 35 H 1.09003 * 109.47253 * 150.02025 * 7 6 5 36 36 H 1.09003 * 109.47014 * 183.29276 * 9 8 7 37 37 H 1.08996 * 109.47355 * 303.29105 * 9 8 7 38 38 H 0.96991 * 119.99701 * 180.02562 * 13 12 10 39 39 H 1.08995 * 109.47214 * 283.60925 * 18 8 7 40 40 H 1.09002 * 109.46918 * 43.61575 * 18 8 7 41 41 H 1.08994 * 109.47328 * 301.59094 * 19 18 8 42 42 H 1.08999 * 109.47263 * 61.59410 * 19 18 8 43 43 H 1.08999 * 109.50992 * 297.54720 * 21 20 19 44 44 H 1.09005 * 109.50556 * 57.67822 * 21 20 19 45 45 H 1.09008 * 109.50827 * 296.91478 * 22 21 20 46 46 H 1.09004 * 109.54029 * 176.80551 * 22 21 20 47 47 H 1.09003 * 109.51415 * 298.73944 * 24 23 22 48 48 H 1.09001 * 109.54402 * 178.62185 * 24 23 22 49 49 H 1.08999 * 109.50304 * 302.32405 * 25 20 19 50 50 H 1.08997 * 109.50873 * 62.41044 * 25 20 19 51 51 H 1.07996 * 120.44444 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2514 2.0238 -1.1512 5 6 2.6879 3.2724 -1.1904 6 6 2.9245 3.9415 0.0001 7 6 3.4277 5.3620 0.0000 8 7 4.8968 5.3611 0.0001 9 6 5.4228 4.8039 -1.2532 10 6 5.0073 5.6807 -2.4062 11 1 4.4732 6.6008 -2.2198 12 6 5.3087 5.3084 -3.6991 13 7 5.9594 4.1881 -3.9260 14 14 4.7943 6.3955 -5.1282 15 1 5.8742 7.3717 -5.4214 16 1 4.5488 5.5541 -6.3269 17 1 3.5507 7.1253 -4.7725 18 6 5.4240 6.7113 0.2383 19 6 6.8987 6.6201 0.6357 20 7 7.4158 7.9673 0.9109 21 6 7.4399 8.7824 -0.3123 22 6 7.9276 10.1926 0.0301 23 8 9.2134 10.1094 0.6505 24 6 9.2264 9.3234 1.8452 25 6 8.7519 7.9042 1.5212 26 6 2.6874 3.2726 1.1906 27 7 2.2461 2.0256 1.1514 28 1 -0.3634 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.8611 3.7622 -2.1373 34 1 3.0648 5.8760 -0.8899 35 1 3.0647 5.8761 0.8900 36 1 6.5109 4.7608 -1.2032 37 1 5.0258 3.7994 -1.3992 38 1 6.1718 3.9264 -4.8354 39 1 5.3289 7.3042 -0.6714 40 1 4.8599 7.1852 1.0416 41 1 6.9967 6.0038 1.5293 42 1 7.4675 6.1719 -0.1789 43 1 8.1156 8.3298 -1.0381 44 1 6.4359 8.8367 -0.7333 45 1 7.2231 10.6652 0.7146 46 1 8.0014 10.7845 -0.8823 47 1 8.5597 9.7706 2.5825 48 1 10.2394 9.2857 2.2460 49 1 8.7056 7.3175 2.4386 50 1 9.4483 7.4369 0.8250 51 1 2.8610 3.7622 2.1374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414362671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:58 Heat of formation + Delta-G solvation = -11.691448 kcal Electronic energy + Delta-G solvation = -29519.919217 eV Core-core repulsion = 25646.510260 eV Total energy + Delta-G solvation = -3873.408957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.04398 -40.55953 -38.89942 -36.70886 -35.31938 -34.62455 -34.47981 -32.50361 -32.10558 -30.48490 -29.03717 -27.46288 -26.20892 -25.53564 -25.09747 -24.94901 -23.52427 -22.29933 -21.46736 -21.13904 -18.71460 -18.47745 -17.66889 -17.61463 -17.16483 -16.85467 -16.51223 -16.23875 -15.96301 -15.82421 -15.71000 -15.54738 -15.21058 -14.94409 -14.69476 -14.45386 -14.34758 -14.27644 -14.06630 -13.45066 -13.21977 -13.06243 -13.00414 -12.83253 -12.75958 -12.54286 -12.38618 -12.33815 -12.21965 -11.99066 -11.94486 -11.76283 -11.71556 -11.64403 -11.56300 -11.35968 -10.66252 -10.59618 -10.16580 -10.12591 -9.45211 -9.00811 -8.15504 -6.33771 -0.01601 0.19475 1.33451 1.36411 1.44021 2.34848 2.61560 2.83570 2.97789 3.05439 3.11103 3.27776 3.56257 3.82390 3.91705 3.95007 4.02489 4.06248 4.11827 4.20744 4.21308 4.26355 4.31092 4.38526 4.40797 4.51591 4.58203 4.68179 4.71007 4.78448 4.80476 4.85614 4.89104 4.90711 4.96787 5.00468 5.05319 5.07635 5.17391 5.21924 5.27093 5.29770 5.36803 5.57459 5.74361 5.91415 5.96877 6.03801 6.07250 6.18558 6.23248 6.49281 6.87137 7.18280 7.37596 8.86328 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.003322 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.715123 B = 8426.896292 C =10377.381475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 C 0.293 3.707 4 N -0.544 5.544 5 C 0.156 3.844 6 C -0.173 4.173 7 C 0.113 3.887 8 N -0.535 5.535 9 C 0.204 3.796 10 C -0.542 4.542 11 H 0.063 0.937 12 C 0.019 3.981 13 N -0.923 5.923 14 Si 0.942 3.058 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.262 1.262 18 C 0.072 3.928 19 C 0.076 3.924 20 N -0.529 5.529 21 C 0.016 3.984 22 C 0.070 3.930 23 O -0.407 6.407 24 C 0.066 3.934 25 C 0.015 3.985 26 C 0.163 3.837 27 N -0.530 5.530 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.147 0.853 34 H 0.041 0.959 35 H 0.107 0.893 36 H -0.006 1.006 37 H 0.007 0.993 38 H 0.261 0.739 39 H 0.031 0.969 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.003 0.997 43 H 0.015 0.985 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.071 0.929 48 H 0.117 0.883 49 H 0.103 0.897 50 H 0.022 0.978 51 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 4.525 13.016 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C 0.025 3.975 4 N -0.258 5.258 5 C -0.009 4.009 6 C -0.177 4.177 7 C -0.016 4.016 8 N -0.259 5.259 9 C 0.078 3.922 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.181 4.181 13 N -0.563 5.563 14 Si 0.768 3.232 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.186 1.186 18 C -0.056 4.056 19 C -0.052 4.052 20 N -0.255 5.255 21 C -0.113 4.113 22 C -0.007 4.007 23 O -0.326 6.326 24 C -0.010 4.010 25 C -0.113 4.113 26 C -0.003 4.003 27 N -0.244 5.244 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.165 0.835 34 H 0.060 0.940 35 H 0.125 0.875 36 H 0.012 0.988 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.022 0.978 43 H 0.034 0.966 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.125 0.875 47 H 0.089 0.911 48 H 0.135 0.865 49 H 0.121 0.879 50 H 0.041 0.959 51 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.799 3.497 13.531 14.482 hybrid contribution 0.663 0.978 -2.887 3.119 sum -3.137 4.475 10.643 11.964 Atomic orbital electron populations 1.21626 0.92352 1.03616 1.01537 1.20434 0.97726 0.86548 1.04496 1.23803 0.91756 0.98436 0.83463 1.68255 1.15200 1.10820 1.31562 1.23194 0.88996 0.89457 0.99239 1.21592 1.01317 0.99917 0.94907 1.20754 0.88264 0.90405 1.02181 1.62377 1.06277 1.21659 1.35569 1.19371 0.93394 0.94331 0.85151 1.21855 1.36645 1.07426 0.92207 0.91918 1.25665 0.95069 0.95916 1.01418 1.70070 1.41057 1.23900 1.21292 0.85798 0.79042 0.79006 0.79394 1.20371 1.21462 1.18574 1.21852 0.94516 0.89397 0.99814 1.21857 0.95291 0.88683 0.99368 1.62261 1.23772 1.13321 1.26120 1.22825 1.01732 0.95461 0.91279 1.22722 0.84695 0.94405 0.98858 1.87936 1.31503 1.71735 1.41441 1.22809 1.03150 0.88419 0.86661 1.22885 0.88754 0.99413 1.00281 1.23538 0.88889 0.89013 0.98886 1.68296 1.15050 1.10885 1.30170 0.92595 0.93681 0.89039 0.89501 0.88105 0.83517 0.94030 0.87528 0.98825 0.97482 0.92965 0.95056 0.89400 0.89910 0.97838 0.96631 0.89561 0.90897 0.87456 0.91051 0.86528 0.87927 0.95917 0.78554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.90 71.98 0.71 -2.03 16 2 C -0.05 -1.34 6.37 29.85 0.19 -1.15 16 3 C 0.29 9.87 6.90 138.75 0.96 10.83 16 4 N -0.54 -21.34 10.33 -187.84 -1.94 -23.28 16 5 C 0.16 6.29 9.26 84.70 0.78 7.08 16 6 C -0.17 -5.99 4.90 -19.69 -0.10 -6.08 16 7 C 0.11 3.72 4.98 85.55 0.43 4.15 16 8 N -0.54 -20.20 4.65 -905.37 -4.21 -24.41 16 9 C 0.20 9.93 4.65 85.56 0.40 10.33 16 10 C -0.54 -27.45 7.30 25.60 0.19 -27.26 16 11 H 0.06 3.07 5.95 -2.91 -0.02 3.05 16 12 C 0.02 1.03 5.46 84.65 0.46 1.49 16 13 N -0.92 -53.75 13.29 21.45 0.28 -53.46 16 14 Si 0.94 42.37 29.54 68.60 2.03 44.40 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 16 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 17 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 18 C 0.07 2.43 4.70 86.30 0.41 2.84 16 19 C 0.08 2.51 4.98 86.30 0.43 2.94 16 20 N -0.53 -14.94 4.73 -895.18 -4.23 -19.17 16 21 C 0.02 0.45 5.44 86.31 0.47 0.92 16 22 C 0.07 1.65 7.01 72.01 0.50 2.15 16 23 O -0.41 -10.42 10.83 -148.98 -1.61 -12.04 16 24 C 0.07 1.34 7.01 72.02 0.50 1.85 16 25 C 0.01 0.36 5.65 86.32 0.49 0.85 16 26 C 0.16 4.93 11.01 84.70 0.93 5.87 16 27 N -0.53 -17.13 10.34 -187.84 -1.94 -19.07 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.15 6.62 7.99 -2.91 -0.02 6.60 16 34 H 0.04 1.53 6.57 -2.39 -0.02 1.51 16 35 H 0.11 2.70 7.82 -2.39 -0.02 2.69 16 36 H -0.01 -0.35 6.73 -2.39 -0.02 -0.36 16 37 H 0.01 0.39 5.96 -2.39 -0.01 0.37 16 38 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.03 1.19 4.57 -2.39 -0.01 1.18 16 40 H 0.09 2.49 7.80 -2.39 -0.02 2.47 16 41 H 0.08 2.56 8.04 -2.39 -0.02 2.54 16 42 H 0.00 0.14 6.81 -2.39 -0.02 0.12 16 43 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.09 2.59 6.42 -2.38 -0.02 2.58 16 45 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 46 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 47 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.10 2.08 8.09 -2.39 -0.02 2.06 16 50 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 51 H 0.20 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -65.01 399.20 -2.97 -67.98 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.91 Total: 24.29 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 7.75 Total: 14.76 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -12.04 Total: -139.39 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.61 Total: -12.04 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -65.01 -2.97 -67.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414362671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.290 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds