Wall clock time and date at job start Tue Mar 31 2020 19:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47346 * 2 1 4 4 C 1.50701 * 109.47011 * 119.99806 * 2 1 3 5 5 N 1.30447 * 125.98984 * 300.02568 * 4 2 1 6 6 N 1.39934 * 108.89908 * 179.97438 * 5 4 2 7 7 C 1.46500 * 125.75398 * 179.97438 * 6 5 4 8 8 C 1.34263 * 108.49020 * 0.02562 * 6 5 4 9 9 C 1.38047 * 107.41538 * 359.76145 * 8 6 5 10 10 C 1.47427 * 126.41073 * 180.25892 * 9 8 6 11 11 O 1.21601 * 119.99700 * 180.13714 * 10 9 8 12 12 N 1.34779 * 120.00337 * 0.12788 * 10 9 8 13 13 C 1.46499 * 120.00208 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47149 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.49306 * 55.00466 * 14 13 12 16 16 C 1.53036 * 109.49627 * 175.06479 * 14 13 12 17 17 C 1.53041 * 109.53802 * 181.31715 * 16 14 13 18 18 C 1.53191 * 109.31388 * 298.63639 * 17 16 14 19 19 N 1.46926 * 108.77391 * 54.63378 * 18 17 16 20 20 C 1.36933 * 120.63076 * 126.39002 * 19 18 17 21 21 H 1.08001 * 120.00290 * 332.57023 * 20 19 18 22 22 C 1.38807 * 120.00359 * 152.56879 * 20 19 18 23 23 N 1.31623 * 120.00613 * 159.35648 * 22 20 19 24 24 Si 1.86805 * 119.99652 * 339.35364 * 22 20 19 25 25 H 1.48497 * 109.47052 * 92.94022 * 24 22 20 26 26 H 1.48504 * 109.47201 * 212.93430 * 24 22 20 27 27 H 1.48499 * 109.47058 * 332.93622 * 24 22 20 28 28 C 1.46932 * 118.76401 * 306.41254 * 19 18 17 29 29 H 1.09000 * 109.46978 * 300.00590 * 1 2 3 30 30 H 1.09005 * 109.47146 * 59.99939 * 1 2 3 31 31 H 1.08999 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46978 * 239.99410 * 2 1 3 33 33 H 1.09000 * 109.47564 * 59.99769 * 3 2 1 34 34 H 1.08994 * 109.47299 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46798 * 299.99653 * 3 2 1 36 36 H 1.08998 * 109.47134 * 90.02434 * 7 6 5 37 37 H 1.09008 * 109.46974 * 210.02487 * 7 6 5 38 38 H 1.08997 * 109.47210 * 330.02198 * 7 6 5 39 39 H 1.08002 * 126.28985 * 180.02562 * 8 6 5 40 40 H 0.97005 * 119.99408 * 0.02562 * 12 10 9 41 41 H 1.09003 * 109.46905 * 300.00922 * 13 12 10 42 42 H 1.08995 * 109.46662 * 60.00255 * 13 12 10 43 43 H 1.09002 * 109.46318 * 301.34005 * 16 14 13 44 44 H 1.09000 * 109.46162 * 61.31021 * 16 14 13 45 45 H 1.09006 * 109.49661 * 58.59062 * 17 16 14 46 46 H 1.09005 * 109.49975 * 178.68128 * 17 16 14 47 47 H 1.09000 * 109.58456 * 174.42369 * 18 17 16 48 48 H 1.08998 * 109.58495 * 294.70615 * 18 17 16 49 49 H 0.96994 * 120.00062 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.56326 * 293.78480 * 28 19 18 51 51 H 1.09005 * 109.61401 * 173.35690 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7899 -0.3683 2.4658 6 7 2.4293 -1.2732 3.3205 7 6 2.4013 -1.2337 4.7847 8 6 3.0736 -2.1831 2.5723 9 6 2.8442 -1.8666 1.2484 10 6 3.3530 -2.5970 0.0732 11 8 3.0793 -2.2119 -1.0473 12 7 4.1215 -3.6915 0.2407 13 6 4.6266 -4.4176 -0.9271 14 6 5.4646 -5.6105 -0.4627 15 1 4.8732 -6.2299 0.2116 16 6 5.8900 -6.4394 -1.6768 17 6 6.7006 -7.6509 -1.2107 18 6 7.9625 -7.1688 -0.4883 19 7 7.5685 -6.2544 0.5922 20 6 7.9912 -6.4693 1.8769 21 1 8.2182 -7.4712 2.2103 22 6 8.1280 -5.3995 2.7507 23 7 8.1311 -5.6074 4.0504 24 14 8.3079 -3.6645 2.0820 25 1 6.9705 -3.0246 1.9997 26 1 9.1804 -2.8734 2.9865 27 1 8.9160 -3.7164 0.7282 28 6 6.7120 -5.1052 0.2689 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9564 0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9562 -0.8900 36 1 1.5553 -1.8173 5.1478 37 1 3.3275 -1.6535 5.1772 38 1 2.3003 -0.2010 5.1184 39 1 3.6597 -3.0128 2.9390 40 1 4.3396 -3.9987 1.1346 41 1 3.7873 -4.7740 -1.5243 42 1 5.2444 -3.7517 -1.5296 43 1 5.0040 -6.7796 -2.2128 44 1 6.5017 -5.8264 -2.3388 45 1 6.0981 -8.2514 -0.5291 46 1 6.9834 -8.2535 -2.0740 47 1 8.4924 -8.0238 -0.0685 48 1 8.6103 -6.6474 -1.1930 49 1 8.2263 -4.8598 4.6609 50 1 7.2569 -4.4131 -0.3731 51 1 6.4166 -4.5990 1.1880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425230221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:59 Heat of formation + Delta-G solvation = 43.844697 kcal Electronic energy + Delta-G solvation = -29979.018718 eV Core-core repulsion = 26108.017989 eV Total energy + Delta-G solvation = -3871.000729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.51851 -39.21264 -37.96339 -35.90013 -34.66819 -33.14683 -32.57340 -31.35242 -30.70125 -29.95593 -27.18136 -27.15150 -25.69253 -25.32982 -23.07354 -22.41535 -22.17970 -20.96856 -20.09651 -19.36615 -19.11537 -17.66777 -16.87599 -16.08259 -15.82085 -15.58930 -15.43039 -14.82217 -14.72426 -14.53572 -14.20577 -13.93500 -13.81837 -13.50667 -13.35404 -13.29146 -13.07723 -12.92212 -12.85230 -12.57636 -12.37358 -12.16518 -12.07261 -11.63697 -11.48400 -11.45853 -11.20652 -11.05383 -10.82581 -10.75920 -10.62452 -10.53299 -10.16249 -9.95797 -9.73361 -9.56284 -9.47180 -9.43539 -8.93134 -8.69163 -8.58931 -7.03643 -6.03700 -3.38709 1.47093 2.16201 2.25096 3.20870 3.41721 3.45347 3.47189 3.59798 4.22840 4.43415 4.52347 4.73417 4.80385 4.91794 4.97305 5.13135 5.16034 5.18233 5.18824 5.23834 5.28790 5.37265 5.40862 5.52474 5.55676 5.61240 5.61593 5.81291 5.81668 5.87488 5.88700 5.98490 6.04021 6.09749 6.14297 6.22310 6.26824 6.29198 6.32948 6.51034 6.54412 6.55656 6.60562 6.66505 6.69588 6.77886 6.94717 7.51517 7.76710 7.88814 8.24958 8.46985 8.86931 9.64012 10.03187 11.12093 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.003788 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.113601 B = 7389.632423 C = 8844.178300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.139 4.139 4 C 0.141 3.859 5 N -0.300 5.300 6 N -0.362 5.362 7 C 0.096 3.904 8 C 0.104 3.896 9 C -0.290 4.290 10 C 0.595 3.405 11 O -0.549 6.549 12 N -0.725 5.725 13 C 0.128 3.872 14 C -0.119 4.119 15 H 0.079 0.921 16 C -0.101 4.101 17 C -0.134 4.134 18 C 0.146 3.854 19 N -0.606 5.606 20 C -0.256 4.256 21 H 0.086 0.914 22 C 0.023 3.977 23 N -0.909 5.909 24 Si 0.878 3.122 25 H -0.288 1.288 26 H -0.304 1.304 27 H -0.271 1.271 28 C 0.135 3.865 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.185 0.815 40 H 0.400 0.600 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.022 0.978 49 H 0.262 0.738 50 H 0.026 0.974 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.886 7.002 -4.445 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.051 4.051 3 C -0.197 4.197 4 C -0.027 4.027 5 N -0.120 5.120 6 N -0.139 5.139 7 C -0.045 4.045 8 C -0.048 4.048 9 C -0.305 4.305 10 C 0.383 3.617 11 O -0.428 6.428 12 N -0.376 5.376 13 C 0.004 3.996 14 C -0.140 4.140 15 H 0.098 0.902 16 C -0.139 4.139 17 C -0.173 4.173 18 C 0.020 3.980 19 N -0.330 5.330 20 C -0.384 4.384 21 H 0.104 0.896 22 C -0.175 4.175 23 N -0.552 5.552 24 Si 0.709 3.291 25 H -0.216 1.216 26 H -0.232 1.232 27 H -0.196 1.196 28 C 0.009 3.991 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.202 0.798 40 H 0.235 0.765 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.040 0.960 49 H 0.071 0.929 50 H 0.044 0.956 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.608 8.147 -4.101 16.382 hybrid contribution 0.827 0.184 0.034 0.848 sum -12.781 8.331 -4.067 15.790 Atomic orbital electron populations 1.21769 0.94039 1.01893 1.01874 1.19972 0.95831 0.95648 0.93627 1.21774 1.01224 0.94818 1.01874 1.22355 0.94104 0.92913 0.93352 1.77103 1.20494 1.14309 1.00114 1.48306 1.37698 1.20765 1.07137 1.22019 1.04098 1.04983 0.73395 1.23224 0.95723 0.94759 0.91088 1.20261 1.13786 1.03898 0.92526 1.17212 0.77456 0.79453 0.87590 1.90659 1.59558 1.67563 1.25021 1.45935 1.52287 1.28774 1.10565 1.21422 0.97351 0.93272 0.87508 1.21969 0.97932 0.95666 0.98420 0.90235 1.21342 0.99284 0.96921 0.96349 1.21988 0.98836 0.96958 0.99557 1.20958 0.93472 0.93595 0.89963 1.44358 1.55023 1.28225 1.05365 1.18964 1.40300 0.94429 0.84751 0.89618 1.25262 0.99662 0.97508 0.95091 1.69845 1.52910 1.31281 1.01149 0.87047 0.77331 0.85943 0.78773 1.21635 1.23234 1.19625 1.21362 0.89655 0.90266 0.97852 0.92504 0.92061 0.92741 0.86423 0.92489 0.92696 0.92039 0.90182 0.88751 0.88948 0.79838 0.76492 0.91598 0.91652 0.92709 0.92311 0.91964 0.92582 0.91963 0.95990 0.92856 0.95627 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 37.16 0.34 -1.19 16 2 C -0.03 -0.40 3.26 -91.77 -0.30 -0.70 16 3 C -0.14 -1.61 9.18 37.16 0.34 -1.27 16 4 C 0.14 2.09 5.77 -82.02 -0.47 1.61 16 5 N -0.30 -4.29 12.50 33.89 0.42 -3.87 16 6 N -0.36 -4.50 3.98 -67.60 -0.27 -4.77 16 7 C 0.10 0.76 11.44 59.85 0.68 1.44 16 8 C 0.10 1.37 10.99 -16.56 -0.18 1.18 16 9 C -0.29 -4.44 6.13 -105.07 -0.64 -5.08 16 10 C 0.60 9.87 7.81 -12.52 -0.10 9.78 16 11 O -0.55 -10.16 14.56 5.28 0.08 -10.08 16 12 N -0.72 -11.31 5.32 -61.39 -0.33 -11.64 16 13 C 0.13 1.96 5.07 -4.04 -0.02 1.94 16 14 C -0.12 -1.94 2.37 -90.51 -0.21 -2.16 16 15 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 16 C -0.10 -1.47 5.17 -26.69 -0.14 -1.61 16 17 C -0.13 -2.06 6.08 -26.61 -0.16 -2.22 16 18 C 0.15 2.75 6.52 -3.71 -0.02 2.73 16 19 N -0.61 -13.71 2.77 -172.32 -0.48 -14.19 16 20 C -0.26 -6.83 10.03 -15.06 -0.15 -6.99 16 21 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 22 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 23 N -0.91 -26.42 13.97 55.49 0.78 -25.64 16 24 Si 0.88 21.57 24.35 -169.99 -4.14 17.43 16 25 H -0.29 -6.63 6.62 56.52 0.37 -6.25 16 26 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 27 H -0.27 -6.75 6.64 56.52 0.38 -6.37 16 28 C 0.13 2.74 3.29 -3.71 -0.01 2.73 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.12 1.75 5.60 -51.93 -0.29 1.46 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.18 2.01 7.46 -52.49 -0.39 1.61 16 40 H 0.40 5.97 6.62 -40.82 -0.27 5.70 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.03 0.55 7.07 -51.93 -0.37 0.18 16 51 H 0.07 1.50 3.71 -51.93 -0.19 1.31 16 LS Contribution 398.51 15.07 6.01 6.01 Total: -1.00 -32.88 398.51 -7.80 -40.68 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.72 Total: 5.32 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.14 Total: 0.75 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.13 Total: -60.11 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.14 Total: 17.43 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.88 -7.80 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425230221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.522 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds