Wall clock time and date at job start Tue Mar 31 2020 19:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47346 * 2 1 4 4 C 1.50701 * 109.47011 * 119.99806 * 2 1 3 5 5 N 1.30447 * 125.98984 * 300.02568 * 4 2 1 6 6 N 1.39934 * 108.89908 * 179.97438 * 5 4 2 7 7 C 1.46500 * 125.75398 * 179.97438 * 6 5 4 8 8 C 1.34263 * 108.49020 * 0.02562 * 6 5 4 9 9 C 1.38047 * 107.41538 * 359.76145 * 8 6 5 10 10 C 1.47427 * 126.41073 * 180.25892 * 9 8 6 11 11 O 1.21601 * 119.99700 * 180.13714 * 10 9 8 12 12 N 1.34779 * 120.00337 * 0.12788 * 10 9 8 13 13 C 1.46499 * 120.00208 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47149 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.49306 * 55.00466 * 14 13 12 16 16 C 1.53036 * 109.49627 * 175.06479 * 14 13 12 17 17 C 1.53041 * 109.53802 * 181.31715 * 16 14 13 18 18 C 1.53191 * 109.31388 * 298.63639 * 17 16 14 19 19 N 1.46926 * 108.77391 * 54.63378 * 18 17 16 20 20 C 1.36933 * 120.63076 * 126.39002 * 19 18 17 21 21 H 1.08001 * 120.00290 * 332.57023 * 20 19 18 22 22 C 1.38807 * 120.00359 * 152.56879 * 20 19 18 23 23 N 1.31623 * 120.00613 * 159.35648 * 22 20 19 24 24 Si 1.86805 * 119.99652 * 339.35364 * 22 20 19 25 25 H 1.48497 * 109.47052 * 92.94022 * 24 22 20 26 26 H 1.48504 * 109.47201 * 212.93430 * 24 22 20 27 27 H 1.48499 * 109.47058 * 332.93622 * 24 22 20 28 28 C 1.46932 * 118.76401 * 306.41254 * 19 18 17 29 29 H 1.09000 * 109.46978 * 300.00590 * 1 2 3 30 30 H 1.09005 * 109.47146 * 59.99939 * 1 2 3 31 31 H 1.08999 * 109.47083 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46978 * 239.99410 * 2 1 3 33 33 H 1.09000 * 109.47564 * 59.99769 * 3 2 1 34 34 H 1.08994 * 109.47299 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46798 * 299.99653 * 3 2 1 36 36 H 1.08998 * 109.47134 * 90.02434 * 7 6 5 37 37 H 1.09008 * 109.46974 * 210.02487 * 7 6 5 38 38 H 1.08997 * 109.47210 * 330.02198 * 7 6 5 39 39 H 1.08002 * 126.28985 * 180.02562 * 8 6 5 40 40 H 0.97005 * 119.99408 * 0.02562 * 12 10 9 41 41 H 1.09003 * 109.46905 * 300.00922 * 13 12 10 42 42 H 1.08995 * 109.46662 * 60.00255 * 13 12 10 43 43 H 1.09002 * 109.46318 * 301.34005 * 16 14 13 44 44 H 1.09000 * 109.46162 * 61.31021 * 16 14 13 45 45 H 1.09006 * 109.49661 * 58.59062 * 17 16 14 46 46 H 1.09005 * 109.49975 * 178.68128 * 17 16 14 47 47 H 1.09000 * 109.58456 * 174.42369 * 18 17 16 48 48 H 1.08998 * 109.58495 * 294.70615 * 18 17 16 49 49 H 0.96994 * 120.00062 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.56326 * 293.78480 * 28 19 18 51 51 H 1.09005 * 109.61401 * 173.35690 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7899 -0.3683 2.4658 6 7 2.4293 -1.2732 3.3205 7 6 2.4013 -1.2337 4.7847 8 6 3.0736 -2.1831 2.5723 9 6 2.8442 -1.8666 1.2484 10 6 3.3530 -2.5970 0.0732 11 8 3.0793 -2.2119 -1.0473 12 7 4.1215 -3.6915 0.2407 13 6 4.6266 -4.4176 -0.9271 14 6 5.4646 -5.6105 -0.4627 15 1 4.8732 -6.2299 0.2116 16 6 5.8900 -6.4394 -1.6768 17 6 6.7006 -7.6509 -1.2107 18 6 7.9625 -7.1688 -0.4883 19 7 7.5685 -6.2544 0.5922 20 6 7.9912 -6.4693 1.8769 21 1 8.2182 -7.4712 2.2103 22 6 8.1280 -5.3995 2.7507 23 7 8.1311 -5.6074 4.0504 24 14 8.3079 -3.6645 2.0820 25 1 6.9705 -3.0246 1.9997 26 1 9.1804 -2.8734 2.9865 27 1 8.9160 -3.7164 0.7282 28 6 6.7120 -5.1052 0.2689 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9564 0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9562 -0.8900 36 1 1.5553 -1.8173 5.1478 37 1 3.3275 -1.6535 5.1772 38 1 2.3003 -0.2010 5.1184 39 1 3.6597 -3.0128 2.9390 40 1 4.3396 -3.9987 1.1346 41 1 3.7873 -4.7740 -1.5243 42 1 5.2444 -3.7517 -1.5296 43 1 5.0040 -6.7796 -2.2128 44 1 6.5017 -5.8264 -2.3388 45 1 6.0981 -8.2514 -0.5291 46 1 6.9834 -8.2535 -2.0740 47 1 8.4924 -8.0238 -0.0685 48 1 8.6103 -6.6474 -1.1930 49 1 8.2263 -4.8598 4.6609 50 1 7.2569 -4.4131 -0.3731 51 1 6.4166 -4.5990 1.1880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425230221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:57 Heat of formation + Delta-G solvation = 22.549951 kcal Electronic energy + Delta-G solvation = -29979.942128 eV Core-core repulsion = 26108.017989 eV Total energy + Delta-G solvation = -3871.924138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.55103 -40.49908 -39.39802 -36.89223 -36.06632 -34.81430 -33.52145 -32.88521 -32.24266 -31.13036 -28.08011 -28.04279 -27.20768 -26.89115 -24.39010 -23.72414 -23.23569 -22.36396 -21.36455 -20.72534 -20.15825 -18.87450 -18.67519 -17.35179 -17.13270 -16.79757 -16.60091 -16.21839 -15.76755 -15.69808 -15.52070 -15.41779 -15.02122 -14.97015 -14.74200 -14.48027 -14.32418 -14.11709 -13.91700 -13.59668 -13.58277 -13.36476 -13.31600 -13.04184 -12.97763 -12.56909 -12.43301 -12.18169 -12.13415 -12.09473 -12.00420 -11.81783 -11.67867 -11.57852 -11.32185 -11.24411 -10.74574 -10.62780 -10.43734 -10.16085 -9.66901 -8.90546 -8.15940 -5.46426 0.42278 1.05841 1.24812 1.38061 1.41018 1.47296 2.26476 2.38392 2.39850 3.05495 3.28020 3.34012 3.56639 3.84904 3.91105 3.96232 3.98649 4.06509 4.17153 4.24267 4.31525 4.33535 4.37040 4.49781 4.52103 4.57091 4.58733 4.63852 4.64654 4.76234 4.77691 4.82923 4.91208 4.92636 4.93810 5.00560 5.08484 5.12673 5.22091 5.26238 5.29216 5.31863 5.33501 5.47225 5.55266 5.61511 5.81113 5.88807 6.14567 6.42767 6.59249 6.93512 7.23369 7.63901 8.05581 9.03946 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.003788 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.113601 B = 7389.632423 C = 8844.178300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 C -0.133 4.133 4 C 0.129 3.871 5 N -0.314 5.314 6 N -0.358 5.358 7 C 0.085 3.915 8 C 0.110 3.890 9 C -0.320 4.320 10 C 0.594 3.406 11 O -0.574 6.574 12 N -0.724 5.724 13 C 0.134 3.866 14 C -0.105 4.105 15 H 0.076 0.924 16 C -0.099 4.099 17 C -0.124 4.124 18 C 0.137 3.863 19 N -0.621 5.621 20 C -0.246 4.246 21 H 0.054 0.946 22 C -0.022 4.022 23 N -0.951 5.951 24 Si 0.934 3.066 25 H -0.265 1.265 26 H -0.316 1.316 27 H -0.276 1.276 28 C 0.132 3.868 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.204 0.796 40 H 0.403 0.597 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.088 0.912 47 H 0.053 0.947 48 H 0.030 0.970 49 H 0.262 0.738 50 H 0.020 0.980 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.172 7.478 -5.632 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.054 4.054 3 C -0.190 4.190 4 C -0.038 4.038 5 N -0.135 5.135 6 N -0.135 5.135 7 C -0.054 4.054 8 C -0.044 4.044 9 C -0.335 4.335 10 C 0.383 3.617 11 O -0.455 6.455 12 N -0.374 5.374 13 C 0.011 3.989 14 C -0.126 4.126 15 H 0.094 0.906 16 C -0.137 4.137 17 C -0.163 4.163 18 C 0.012 3.988 19 N -0.345 5.345 20 C -0.376 4.376 21 H 0.072 0.928 22 C -0.218 4.218 23 N -0.597 5.597 24 Si 0.764 3.236 25 H -0.192 1.192 26 H -0.245 1.245 27 H -0.201 1.201 28 C 0.007 3.993 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.120 0.880 39 H 0.221 0.779 40 H 0.238 0.762 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.106 0.894 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.038 0.962 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.917 8.620 -5.309 18.028 hybrid contribution 1.266 -0.061 0.448 1.344 sum -13.651 8.560 -4.861 16.830 Atomic orbital electron populations 1.21712 0.92591 1.01638 1.02872 1.19997 0.97036 0.96043 0.92338 1.21728 1.00278 0.94115 1.02927 1.22631 0.94149 0.93026 0.94006 1.77050 1.21148 1.15102 1.00170 1.48703 1.36447 1.19808 1.08505 1.22412 1.05872 1.06216 0.70880 1.23506 0.95232 0.95016 0.90601 1.20331 1.15370 1.04799 0.93016 1.17405 0.77188 0.79440 0.87686 1.90639 1.60594 1.68273 1.26013 1.45948 1.52040 1.28625 1.10836 1.21381 0.97531 0.92599 0.87434 1.21791 0.95805 0.96109 0.98860 0.90559 1.21379 1.00502 0.96233 0.95592 1.21884 0.96791 0.97525 1.00088 1.21178 0.95600 0.92724 0.89285 1.44506 1.55779 1.29402 1.04787 1.18904 1.39007 0.93095 0.86586 0.92788 1.25714 1.00378 1.00556 0.95106 1.69946 1.55242 1.32241 1.02299 0.86136 0.77964 0.82216 0.77273 1.19171 1.24523 1.20137 1.21361 0.90969 0.89470 0.97485 0.92378 0.90116 0.93599 0.88328 0.92333 0.94067 0.90028 0.88316 0.87056 0.88031 0.77888 0.76171 0.90120 0.92205 0.89694 0.91677 0.92724 0.89373 0.92847 0.95215 0.92887 0.96169 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.18 71.98 0.66 -2.11 16 2 C -0.03 -0.87 3.26 -11.54 -0.04 -0.91 16 3 C -0.13 -2.96 9.18 71.98 0.66 -2.30 16 4 C 0.13 3.77 5.77 43.51 0.25 4.02 16 5 N -0.31 -8.67 12.50 -46.68 -0.58 -9.26 16 6 N -0.36 -8.34 3.98 -367.77 -1.46 -9.80 16 7 C 0.09 1.16 11.44 127.77 1.46 2.62 16 8 C 0.11 2.74 10.99 84.28 0.93 3.67 16 9 C -0.32 -9.60 6.13 -20.15 -0.12 -9.73 16 10 C 0.59 19.32 7.81 86.66 0.68 20.00 16 11 O -0.57 -21.07 14.56 -4.04 -0.06 -21.13 16 12 N -0.72 -21.64 5.32 -466.38 -2.48 -24.12 16 13 C 0.13 3.83 5.07 86.38 0.44 4.27 16 14 C -0.11 -3.19 2.37 -10.72 -0.03 -3.22 16 15 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 16 C -0.10 -2.54 5.17 30.62 0.16 -2.38 16 17 C -0.12 -3.44 6.08 30.67 0.19 -3.26 16 18 C 0.14 4.97 6.52 86.36 0.56 5.54 16 19 N -0.62 -27.69 2.77 -699.09 -1.94 -29.63 16 20 C -0.25 -13.33 10.03 84.03 0.84 -12.49 16 21 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 22 C -0.02 -1.24 5.23 84.86 0.44 -0.79 16 23 N -0.95 -56.36 13.97 21.65 0.30 -56.05 16 24 Si 0.93 44.84 24.35 68.60 1.67 46.51 16 25 H -0.27 -11.58 6.62 99.48 0.66 -10.92 16 26 H -0.32 -15.69 7.11 99.48 0.71 -14.98 16 27 H -0.28 -13.33 6.64 99.48 0.66 -12.67 16 28 C 0.13 5.21 3.29 86.36 0.28 5.50 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 2.95 5.60 -2.39 -0.01 2.93 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.20 4.08 7.46 -2.91 -0.02 4.05 16 40 H 0.40 11.51 6.62 -92.70 -0.61 10.89 16 41 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 46 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 48 H 0.03 1.04 8.14 -2.39 -0.02 1.03 16 49 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 50 H 0.02 0.83 7.07 -2.39 -0.02 0.81 16 51 H 0.05 2.23 3.71 -2.38 -0.01 2.23 16 Total: -1.00 -71.99 398.51 3.03 -68.97 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.21 Total: 26.10 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 7.37 Total: 8.42 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -6.16 Total: -128.87 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.06 Total: -21.13 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.67 Total: 46.51 kcal Total: -71.99 3.03 -68.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425230221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.515 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds