Wall clock time and date at job start Tue Mar 31 2020 19:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47377 * 2 1 4 4 N 1.30285 * 126.34999 * 270.04824 * 3 2 1 5 5 N 1.28529 * 110.05868 * 179.97438 * 4 3 2 6 6 C 1.31220 * 109.85513 * 359.74226 * 5 4 3 7 7 N 1.38574 * 126.47468 * 180.26088 * 6 5 4 8 8 C 1.46900 * 111.00327 * 107.19676 * 7 6 5 9 9 C 1.50702 * 109.47177 * 298.63716 * 8 7 6 10 10 H 1.07997 * 119.99451 * 4.99645 * 9 8 7 11 11 C 1.37880 * 120.00252 * 185.00387 * 9 8 7 12 12 N 1.31513 * 119.99602 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00305 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47226 * 89.99625 * 13 11 9 15 15 H 1.48493 * 109.47100 * 209.99947 * 13 11 9 16 16 H 1.48501 * 109.46896 * 329.99887 * 13 11 9 17 17 C 1.46903 * 111.00060 * 343.24536 * 7 6 5 18 18 C 1.53003 * 109.47183 * 195.47344 * 17 7 6 19 19 C 1.52998 * 117.49551 * 243.92700 * 18 17 7 20 20 C 1.52996 * 117.49812 * 175.26561 * 18 17 7 21 21 N 1.36461 * 107.05366 * 0.40267 * 6 5 4 22 22 C 1.46503 * 127.13568 * 179.87458 * 21 6 5 23 23 C 1.52994 * 109.47109 * 264.22236 * 22 21 6 24 24 H 1.09001 * 110.74881 * 302.98304 * 23 22 21 25 25 C 1.55566 * 110.83993 * 179.30876 * 23 22 21 26 26 C 1.54936 * 100.82736 * 207.68388 * 25 23 22 27 27 O 1.43650 * 105.22398 * 36.44111 * 26 25 23 28 28 C 1.43240 * 109.97027 * 335.52227 * 27 26 25 29 29 H 1.08996 * 109.47098 * 59.99588 * 1 2 3 30 30 H 1.09007 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46627 * 299.99645 * 1 2 3 32 32 H 1.09003 * 109.47136 * 240.00434 * 2 1 3 33 33 H 1.08999 * 109.47595 * 120.00310 * 2 1 3 34 34 H 1.09000 * 109.47227 * 58.63205 * 8 7 6 35 35 H 1.09000 * 109.47502 * 178.63072 * 8 7 6 36 36 H 0.97008 * 120.00102 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.46378 * 315.46739 * 17 7 6 38 38 H 1.08995 * 109.47157 * 75.46864 * 17 7 6 39 39 H 1.09003 * 115.55147 * 29.59001 * 18 17 7 40 40 H 1.09003 * 117.49765 * 359.97438 * 19 18 17 41 41 H 1.09000 * 117.50080 * 145.02253 * 19 18 17 42 42 H 1.08996 * 117.49666 * 214.97362 * 20 18 17 43 43 H 1.09003 * 117.50167 * 359.97438 * 20 18 17 44 44 H 1.09000 * 109.46628 * 144.22343 * 22 21 6 45 45 H 1.09004 * 109.46871 * 24.22257 * 22 21 6 46 46 H 1.09001 * 111.22523 * 89.77818 * 25 23 22 47 47 H 1.09006 * 111.13161 * 325.54407 * 25 23 22 48 48 H 1.09000 * 110.30975 * 277.47568 * 26 25 23 49 49 H 1.09001 * 110.30923 * 155.40260 * 26 25 23 50 50 H 1.08994 * 109.82645 * 121.22539 * 28 27 26 51 51 H 1.09002 * 109.82867 * 242.20139 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2890 2.1492 -1.0493 5 7 2.7001 3.3123 -0.6888 6 6 2.7227 3.3908 0.6209 7 7 3.1041 4.4899 1.3738 8 6 1.9385 5.1322 1.9957 9 6 1.0005 5.6191 0.9214 10 1 1.2048 5.3963 -0.1154 11 6 -0.1184 6.3492 1.2621 12 7 -0.3673 6.6202 2.5247 13 14 -1.2807 6.9534 -0.0695 14 1 -2.3282 5.9296 -0.3142 15 1 -1.9195 8.2203 0.3685 16 1 -0.5184 7.1905 -1.3216 17 6 3.8612 5.4493 0.5587 18 6 4.5865 6.4366 1.4753 19 6 4.1787 7.9088 1.3914 20 6 5.5231 7.4528 0.8188 21 7 2.3028 2.1847 1.1014 22 6 2.1644 1.7918 2.5060 23 6 3.4261 1.0524 2.9554 24 1 3.6131 0.1865 2.3203 25 6 3.3201 0.6351 4.4503 26 6 4.8161 0.6123 4.8529 27 8 5.4169 1.7008 4.1334 28 6 4.6445 2.0003 2.9649 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.4218 4.4117 2.6298 35 1 2.2685 5.9770 2.6002 36 1 -1.1547 7.1336 2.7646 37 1 4.5911 4.9137 -0.0484 38 1 3.1765 5.9933 -0.0919 39 1 4.8712 6.0482 2.4532 40 1 3.3939 8.1741 0.6829 41 1 4.1955 8.4891 2.3140 42 1 6.4237 7.7333 1.3650 43 1 5.6229 7.4178 -0.2661 44 1 1.3004 1.1365 2.6164 45 1 2.0265 2.6817 3.1202 46 1 2.8704 -0.3525 4.5534 47 1 2.7691 1.3777 5.0275 48 1 5.2725 -0.3330 4.5594 49 1 4.9211 0.7651 5.9271 50 1 4.3070 3.0361 3.0004 51 1 5.2471 1.8369 2.0714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583968364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:11 Heat of formation + Delta-G solvation = 58.828047 kcal Electronic energy + Delta-G solvation = -31245.334740 eV Core-core repulsion = 27374.983738 eV Total energy + Delta-G solvation = -3870.351002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.38677 -39.42005 -37.86487 -35.63005 -35.28961 -33.53462 -32.53197 -31.94487 -29.42505 -28.55847 -27.46283 -26.27324 -25.29872 -23.95081 -22.58151 -22.50089 -21.82095 -21.09340 -20.66637 -19.78680 -19.32015 -17.09902 -16.61508 -16.30250 -16.18023 -15.76516 -15.41743 -14.98526 -14.70739 -14.52417 -14.45001 -14.04192 -13.72230 -13.45490 -13.24380 -13.14766 -12.86648 -12.57124 -12.27248 -12.06644 -11.81790 -11.68730 -11.55417 -11.31220 -11.25403 -11.17777 -11.05289 -11.00343 -10.95275 -10.83853 -10.68156 -10.57024 -10.20255 -10.04525 -9.82608 -9.65189 -9.57107 -9.43786 -9.27049 -8.73300 -8.54382 -7.44597 -6.16453 -4.22770 2.39376 2.77824 3.24316 3.31114 3.38413 3.54849 3.84046 4.20659 4.31781 4.35675 4.49087 4.61913 4.69024 4.73292 4.93337 5.07059 5.09142 5.12696 5.18148 5.25519 5.31362 5.35403 5.46696 5.51693 5.55325 5.57075 5.58070 5.62089 5.75935 5.80399 5.82163 5.86124 5.93973 6.02607 6.10471 6.18105 6.19324 6.25256 6.38528 6.44392 6.49164 6.65780 6.69025 6.92456 6.97407 6.99026 7.26163 7.28137 7.56142 7.79858 8.03156 8.14061 8.86088 9.44170 9.47473 10.90144 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.005376 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.246378 B = 5207.362431 C = 6638.666865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.026 4.026 3 C 0.152 3.848 4 N -0.287 5.287 5 N -0.334 5.334 6 C 0.412 3.588 7 N -0.466 5.466 8 C 0.194 3.806 9 C -0.549 4.549 10 H 0.068 0.932 11 C 0.071 3.929 12 N -0.890 5.890 13 Si 0.889 3.111 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.271 1.271 17 C 0.108 3.892 18 C -0.134 4.134 19 C -0.168 4.168 20 C -0.186 4.186 21 N -0.475 5.475 22 C 0.123 3.877 23 C -0.136 4.136 24 H 0.086 0.914 25 C -0.148 4.148 26 C 0.053 3.947 27 O -0.384 6.384 28 C 0.055 3.945 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.024 0.976 35 H 0.057 0.943 36 H 0.263 0.737 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.057 0.943 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.818 -12.203 4.292 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.066 4.066 3 C -0.115 4.115 4 N -0.126 5.126 5 N -0.178 5.178 6 C 0.056 3.944 7 N -0.190 5.190 8 C 0.070 3.930 9 C -0.588 4.588 10 H 0.086 0.914 11 C -0.132 4.132 12 N -0.528 5.528 13 Si 0.717 3.283 14 H -0.208 1.208 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.019 4.019 18 C -0.153 4.153 19 C -0.205 4.205 20 C -0.224 4.224 21 N -0.170 5.170 22 C -0.001 4.001 23 C -0.156 4.156 24 H 0.105 0.895 25 C -0.186 4.186 26 C -0.024 4.024 27 O -0.303 6.303 28 C -0.021 4.021 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.126 0.874 46 H 0.104 0.896 47 H 0.104 0.896 48 H 0.075 0.925 49 H 0.103 0.897 50 H 0.115 0.885 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.336 -11.717 3.409 14.238 hybrid contribution -1.728 0.207 0.178 1.749 sum 5.608 -11.510 3.587 13.297 Atomic orbital electron populations 1.21752 0.94055 1.01763 1.03013 1.19821 0.96282 0.87004 1.03457 1.24399 1.06875 0.97460 0.82813 1.73818 1.15137 0.99376 1.24316 1.74637 1.23224 1.12224 1.07694 1.22549 0.96121 0.86851 0.88923 1.59356 1.24824 1.05930 1.28903 1.19967 0.84263 0.94287 0.94473 1.21736 1.08113 1.34797 0.94115 0.91391 1.24864 0.97585 0.95477 0.95300 1.69927 1.27536 1.39338 1.16021 0.86621 0.81114 0.78206 0.82405 1.20751 1.21078 1.19577 1.21430 0.95443 0.91873 0.93157 1.22122 1.01849 0.90729 1.00616 1.22974 0.97380 0.97487 1.02696 1.22937 0.94125 1.05110 1.00233 1.45959 1.52328 1.11235 1.07482 1.21794 0.97238 1.01616 0.79429 1.23158 0.95919 0.99199 0.97278 0.89528 1.23313 0.97824 1.02933 0.94517 1.23306 0.91422 0.90516 0.97159 1.88417 1.51089 1.52452 1.38370 1.23313 0.90649 1.00409 0.87775 0.91749 0.91896 0.92667 0.88937 0.90825 0.95769 0.92534 0.92737 0.91535 0.91190 0.87774 0.88416 0.89448 0.89431 0.89228 0.89153 0.87385 0.89644 0.89558 0.92518 0.89745 0.88530 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.34 16 2 C -0.03 -0.31 6.25 -27.88 -0.17 -0.48 16 3 C 0.15 2.63 7.32 -154.02 -1.13 1.50 16 4 N -0.29 -6.06 12.18 32.99 0.40 -5.66 16 5 N -0.33 -7.59 11.01 30.32 0.33 -7.26 16 6 C 0.41 8.53 5.52 -318.87 -1.76 6.77 16 7 N -0.47 -9.47 3.59 -175.87 -0.63 -10.10 16 8 C 0.19 4.56 4.80 -4.97 -0.02 4.54 16 9 C -0.55 -14.58 7.53 -34.44 -0.26 -14.84 16 10 H 0.07 1.93 6.43 -52.49 -0.34 1.59 16 11 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 12 N -0.89 -24.80 13.29 55.43 0.74 -24.07 16 13 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 17 C 0.11 2.13 4.57 -3.82 -0.02 2.11 16 18 C -0.13 -2.31 5.05 -90.62 -0.46 -2.77 16 19 C -0.17 -2.83 10.18 -26.69 -0.27 -3.10 16 20 C -0.19 -2.73 10.25 -26.69 -0.27 -3.01 16 21 N -0.48 -8.30 2.65 -114.09 -0.30 -8.60 16 22 C 0.12 1.70 5.10 -4.04 -0.02 1.68 16 23 C -0.14 -1.58 3.26 -88.53 -0.29 -1.87 16 24 H 0.09 0.94 7.93 -51.93 -0.41 0.53 16 25 C -0.15 -1.35 6.64 -24.34 -0.16 -1.52 16 26 C 0.05 0.53 7.77 38.18 0.30 0.83 16 27 O -0.38 -5.45 11.36 -35.23 -0.40 -5.85 16 28 C 0.05 0.78 6.99 37.88 0.26 1.05 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.70 7.76 -51.93 -0.40 0.30 16 34 H 0.02 0.60 6.29 -51.93 -0.33 0.27 16 35 H 0.06 1.42 7.42 -51.93 -0.39 1.03 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.07 1.29 7.81 -51.93 -0.41 0.88 16 38 H 0.07 1.57 6.20 -51.93 -0.32 1.25 16 39 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 40 H 0.10 1.80 8.03 -51.93 -0.42 1.39 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.09 1.05 8.07 -51.93 -0.42 0.64 16 45 H 0.11 1.69 6.08 -51.93 -0.32 1.37 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.10 1.57 6.61 -51.93 -0.34 1.23 16 51 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 404.18 15.07 6.09 6.09 Total: -1.00 -31.19 404.18 -11.51 -42.70 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -8.71 Total: 4.70 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -4.00 Total: -8.62 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.54 Total: -55.68 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.40 Total: -5.85 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.19 -11.51 -42.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583968364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.524 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds