Wall clock time and date at job start Tue Mar 31 2020 19:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47377 * 2 1 4 4 N 1.30285 * 126.34999 * 270.04824 * 3 2 1 5 5 N 1.28529 * 110.05868 * 179.97438 * 4 3 2 6 6 C 1.31220 * 109.85513 * 359.74226 * 5 4 3 7 7 N 1.38574 * 126.47468 * 180.26088 * 6 5 4 8 8 C 1.46900 * 111.00327 * 107.19676 * 7 6 5 9 9 C 1.50702 * 109.47177 * 298.63716 * 8 7 6 10 10 H 1.07997 * 119.99451 * 4.99645 * 9 8 7 11 11 C 1.37880 * 120.00252 * 185.00387 * 9 8 7 12 12 N 1.31513 * 119.99602 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00305 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47226 * 89.99625 * 13 11 9 15 15 H 1.48493 * 109.47100 * 209.99947 * 13 11 9 16 16 H 1.48501 * 109.46896 * 329.99887 * 13 11 9 17 17 C 1.46903 * 111.00060 * 343.24536 * 7 6 5 18 18 C 1.53003 * 109.47183 * 195.47344 * 17 7 6 19 19 C 1.52998 * 117.49551 * 243.92700 * 18 17 7 20 20 C 1.52996 * 117.49812 * 175.26561 * 18 17 7 21 21 N 1.36461 * 107.05366 * 0.40267 * 6 5 4 22 22 C 1.46503 * 127.13568 * 179.87458 * 21 6 5 23 23 C 1.52994 * 109.47109 * 264.22236 * 22 21 6 24 24 H 1.09001 * 110.74881 * 302.98304 * 23 22 21 25 25 C 1.55566 * 110.83993 * 179.30876 * 23 22 21 26 26 C 1.54936 * 100.82736 * 207.68388 * 25 23 22 27 27 O 1.43650 * 105.22398 * 36.44111 * 26 25 23 28 28 C 1.43240 * 109.97027 * 335.52227 * 27 26 25 29 29 H 1.08996 * 109.47098 * 59.99588 * 1 2 3 30 30 H 1.09007 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46627 * 299.99645 * 1 2 3 32 32 H 1.09003 * 109.47136 * 240.00434 * 2 1 3 33 33 H 1.08999 * 109.47595 * 120.00310 * 2 1 3 34 34 H 1.09000 * 109.47227 * 58.63205 * 8 7 6 35 35 H 1.09000 * 109.47502 * 178.63072 * 8 7 6 36 36 H 0.97008 * 120.00102 * 180.02562 * 12 11 9 37 37 H 1.09002 * 109.46378 * 315.46739 * 17 7 6 38 38 H 1.08995 * 109.47157 * 75.46864 * 17 7 6 39 39 H 1.09003 * 115.55147 * 29.59001 * 18 17 7 40 40 H 1.09003 * 117.49765 * 359.97438 * 19 18 17 41 41 H 1.09000 * 117.50080 * 145.02253 * 19 18 17 42 42 H 1.08996 * 117.49666 * 214.97362 * 20 18 17 43 43 H 1.09003 * 117.50167 * 359.97438 * 20 18 17 44 44 H 1.09000 * 109.46628 * 144.22343 * 22 21 6 45 45 H 1.09004 * 109.46871 * 24.22257 * 22 21 6 46 46 H 1.09001 * 111.22523 * 89.77818 * 25 23 22 47 47 H 1.09006 * 111.13161 * 325.54407 * 25 23 22 48 48 H 1.09000 * 110.30975 * 277.47568 * 26 25 23 49 49 H 1.09001 * 110.30923 * 155.40260 * 26 25 23 50 50 H 1.08994 * 109.82645 * 121.22539 * 28 27 26 51 51 H 1.09002 * 109.82867 * 242.20139 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2890 2.1492 -1.0493 5 7 2.7001 3.3123 -0.6888 6 6 2.7227 3.3908 0.6209 7 7 3.1041 4.4899 1.3738 8 6 1.9385 5.1322 1.9957 9 6 1.0005 5.6191 0.9214 10 1 1.2048 5.3963 -0.1154 11 6 -0.1184 6.3492 1.2621 12 7 -0.3673 6.6202 2.5247 13 14 -1.2807 6.9534 -0.0695 14 1 -2.3282 5.9296 -0.3142 15 1 -1.9195 8.2203 0.3685 16 1 -0.5184 7.1905 -1.3216 17 6 3.8612 5.4493 0.5587 18 6 4.5865 6.4366 1.4753 19 6 4.1787 7.9088 1.3914 20 6 5.5231 7.4528 0.8188 21 7 2.3028 2.1847 1.1014 22 6 2.1644 1.7918 2.5060 23 6 3.4261 1.0524 2.9554 24 1 3.6131 0.1865 2.3203 25 6 3.3201 0.6351 4.4503 26 6 4.8161 0.6123 4.8529 27 8 5.4169 1.7008 4.1334 28 6 4.6445 2.0003 2.9649 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.4218 4.4117 2.6298 35 1 2.2685 5.9770 2.6002 36 1 -1.1547 7.1336 2.7646 37 1 4.5911 4.9137 -0.0484 38 1 3.1765 5.9933 -0.0919 39 1 4.8712 6.0482 2.4532 40 1 3.3939 8.1741 0.6829 41 1 4.1955 8.4891 2.3140 42 1 6.4237 7.7333 1.3650 43 1 5.6229 7.4178 -0.2661 44 1 1.3004 1.1365 2.6164 45 1 2.0265 2.6817 3.1202 46 1 2.8704 -0.3525 4.5534 47 1 2.7691 1.3777 5.0275 48 1 5.2725 -0.3330 4.5594 49 1 4.9211 0.7651 5.9271 50 1 4.3070 3.0361 3.0004 51 1 5.2471 1.8369 2.0714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583968364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:10 Heat of formation + Delta-G solvation = 42.558044 kcal Electronic energy + Delta-G solvation = -31246.040260 eV Core-core repulsion = 27374.983738 eV Total energy + Delta-G solvation = -3871.056522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.87148 -40.40148 -39.42782 -37.11648 -36.55420 -34.88043 -34.33050 -33.06695 -30.37245 -30.12980 -29.22876 -27.55474 -26.96778 -25.16122 -24.31729 -23.39636 -23.14023 -22.15802 -22.05541 -21.17901 -20.76576 -18.79902 -17.93426 -17.66668 -17.52171 -17.14457 -16.89175 -16.38117 -16.19350 -15.83138 -15.66715 -15.23654 -15.03439 -14.82946 -14.52563 -14.47194 -14.10091 -13.87876 -13.56642 -13.33978 -13.21871 -13.12309 -13.05684 -12.69448 -12.55889 -12.49512 -12.39408 -12.30984 -12.20641 -12.14347 -12.05757 -12.03605 -11.91581 -11.73876 -11.23452 -11.18293 -10.93130 -10.72815 -10.65421 -10.52805 -10.34479 -9.13142 -8.26561 -6.38780 0.94035 1.26200 1.29331 1.39998 1.43231 1.98629 2.30873 2.85077 2.93432 3.02921 3.11178 3.33458 3.45535 3.62167 3.74843 3.94744 3.97780 4.04440 4.09101 4.15283 4.20952 4.27823 4.30733 4.34834 4.36765 4.46328 4.53137 4.57285 4.63934 4.78034 4.80953 4.82566 4.85199 4.92516 4.95578 4.97538 4.99897 5.07624 5.11019 5.17347 5.20487 5.24693 5.26879 5.33226 5.33735 5.38989 5.64873 5.74623 5.90021 6.02917 6.04315 6.49965 6.74568 7.30271 7.93399 8.77998 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.005376 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.246378 B = 5207.362431 C = 6638.666865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.025 4.025 3 C 0.172 3.828 4 N -0.333 5.333 5 N -0.372 5.372 6 C 0.391 3.609 7 N -0.451 5.451 8 C 0.216 3.784 9 C -0.551 4.551 10 H 0.045 0.955 11 C 0.032 3.968 12 N -0.911 5.911 13 Si 0.938 3.062 14 H -0.280 1.280 15 H -0.272 1.272 16 H -0.280 1.280 17 C 0.118 3.882 18 C -0.150 4.150 19 C -0.179 4.179 20 C -0.153 4.153 21 N -0.472 5.472 22 C 0.118 3.882 23 C -0.125 4.125 24 H 0.104 0.896 25 C -0.136 4.136 26 C 0.043 3.957 27 O -0.409 6.409 28 C 0.058 3.942 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.015 0.985 35 H 0.040 0.960 36 H 0.267 0.733 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.121 0.879 45 H 0.085 0.915 46 H 0.122 0.878 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.099 0.901 50 H 0.069 0.931 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.841 -14.702 5.490 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 C -0.097 4.097 4 N -0.171 5.171 5 N -0.215 5.215 6 C 0.033 3.967 7 N -0.175 5.175 8 C 0.091 3.909 9 C -0.590 4.590 10 H 0.063 0.937 11 C -0.169 4.169 12 N -0.550 5.550 13 Si 0.764 3.236 14 H -0.206 1.206 15 H -0.197 1.197 16 H -0.206 1.206 17 C -0.010 4.010 18 C -0.168 4.168 19 C -0.216 4.216 20 C -0.191 4.191 21 N -0.167 5.167 22 C -0.004 4.004 23 C -0.144 4.144 24 H 0.123 0.877 25 C -0.174 4.174 26 C -0.033 4.033 27 O -0.329 6.329 28 C -0.019 4.019 29 H 0.057 0.943 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.033 0.967 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.125 0.875 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.113 0.887 44 H 0.139 0.861 45 H 0.104 0.896 46 H 0.140 0.860 47 H 0.100 0.900 48 H 0.093 0.907 49 H 0.117 0.883 50 H 0.087 0.913 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.361 -14.230 4.617 16.673 hybrid contribution -1.717 0.895 -0.196 1.946 sum 5.644 -13.335 4.421 15.140 Atomic orbital electron populations 1.21731 0.93415 1.03703 1.01300 1.20180 0.96578 0.83691 1.06045 1.25493 1.03588 0.98829 0.81742 1.73731 1.17613 0.99602 1.26201 1.74506 1.24275 1.13636 1.09079 1.22587 0.97432 0.87854 0.88810 1.59337 1.23317 1.05822 1.28999 1.19540 0.84616 0.93372 0.93390 1.21804 1.08812 1.34726 0.93672 0.93676 1.25423 0.98784 0.95780 0.96880 1.69983 1.28107 1.39935 1.16965 0.85868 0.79430 0.78247 0.80044 1.20607 1.19681 1.20569 1.21303 0.94613 0.91849 0.93216 1.22065 1.03577 0.90459 1.00721 1.22930 0.98516 0.97166 1.03004 1.23034 0.93863 1.01414 1.00748 1.46226 1.51217 1.10162 1.09051 1.22064 0.99767 1.01509 0.77032 1.23097 0.93246 0.98548 0.99510 0.87744 1.23328 0.97376 1.04710 0.91955 1.23612 0.91944 0.90040 0.97660 1.88391 1.51884 1.54128 1.38479 1.23113 0.91582 0.99751 0.87423 0.94328 0.88100 0.93534 0.87494 0.87044 0.96748 0.94241 0.92427 0.91698 0.94663 0.87504 0.90826 0.88378 0.86470 0.88706 0.86060 0.89630 0.86012 0.89983 0.90737 0.88305 0.91316 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.89 71.98 0.71 -2.19 16 2 C -0.03 -0.53 6.25 29.85 0.19 -0.35 16 3 C 0.17 5.83 7.32 137.64 1.01 6.83 16 4 N -0.33 -14.36 12.18 -49.54 -0.60 -14.96 16 5 N -0.37 -17.67 11.01 -58.00 -0.64 -18.31 16 6 C 0.39 16.84 5.52 260.11 1.44 18.27 16 7 N -0.45 -19.33 3.59 -710.34 -2.55 -21.88 16 8 C 0.22 10.64 4.80 85.56 0.41 11.05 16 9 C -0.55 -30.53 7.53 25.60 0.19 -30.34 16 10 H 0.05 2.70 6.43 -2.91 -0.02 2.68 16 11 C 0.03 1.80 5.46 84.66 0.46 2.26 16 12 N -0.91 -51.53 13.29 21.45 0.28 -51.24 16 13 Si 0.94 45.38 29.54 68.60 2.03 47.41 16 14 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 15 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 17 C 0.12 4.91 4.57 86.30 0.39 5.31 16 18 C -0.15 -5.30 5.05 -10.79 -0.05 -5.36 16 19 C -0.18 -6.17 10.18 30.62 0.31 -5.86 16 20 C -0.15 -4.38 10.25 30.62 0.31 -4.06 16 21 N -0.47 -16.46 2.65 -514.86 -1.37 -17.82 16 22 C 0.12 3.11 5.10 86.38 0.44 3.55 16 23 C -0.12 -2.61 3.26 -9.44 -0.03 -2.64 16 24 H 0.10 1.87 7.93 -2.39 -0.02 1.85 16 25 C -0.14 -2.02 6.64 32.14 0.21 -1.81 16 26 C 0.04 0.75 7.77 72.64 0.56 1.32 16 27 O -0.41 -11.26 11.36 -148.98 -1.69 -12.96 16 28 C 0.06 1.65 6.99 72.45 0.51 2.15 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 2.00 8.14 -2.39 -0.02 1.99 16 33 H 0.11 1.54 7.76 -2.39 -0.02 1.52 16 34 H 0.01 0.74 6.29 -2.39 -0.02 0.73 16 35 H 0.04 2.08 7.42 -2.39 -0.02 2.06 16 36 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 37 H 0.06 2.68 7.81 -2.39 -0.02 2.66 16 38 H 0.03 1.70 6.20 -2.39 -0.01 1.69 16 39 H 0.11 3.73 8.14 -2.39 -0.02 3.72 16 40 H 0.07 2.88 8.03 -2.39 -0.02 2.86 16 41 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 43 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.12 2.44 8.07 -2.39 -0.02 2.42 16 45 H 0.09 2.69 6.08 -2.38 -0.01 2.68 16 46 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.08 1.33 8.04 -2.38 -0.02 1.31 16 48 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.07 2.33 6.61 -2.39 -0.02 2.31 16 51 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.33 404.18 3.44 -68.90 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.91 Total: 22.73 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 7.07 Total: -1.87 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -4.87 Total: -124.22 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -1.69 Total: -12.96 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -72.33 3.44 -68.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583968364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.455 kcal (2) G-P(sol) polarization free energy of solvation -72.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds