Wall clock time and date at job start Tue Mar 31 2020 19:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47220 * 2 1 4 4 N 1.30304 * 126.34762 * 284.33327 * 3 2 1 5 5 N 1.28518 * 110.05738 * 179.82010 * 4 3 2 6 6 C 1.31222 * 109.86144 * 0.45644 * 5 4 3 7 7 N 1.38575 * 126.47776 * 179.69387 * 6 5 4 8 8 C 1.46853 * 110.99890 * 251.79864 * 7 6 5 9 9 C 1.53038 * 109.52354 * 174.15864 * 8 7 6 10 10 C 1.53122 * 109.27688 * 59.17664 * 9 8 7 11 11 C 1.53114 * 109.16158 * 302.34523 * 10 9 8 12 12 H 1.08996 * 109.50942 * 297.67183 * 11 10 9 13 13 C 1.50710 * 109.50206 * 177.59370 * 11 10 9 14 14 H 1.08001 * 119.99953 * 239.99974 * 13 11 10 15 15 C 1.37875 * 119.99513 * 60.00426 * 13 11 10 16 16 N 1.31511 * 120.00566 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99597 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47279 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47138 * 119.99812 * 17 15 13 20 20 H 1.48504 * 109.47193 * 239.99554 * 17 15 13 21 21 C 1.46846 * 111.00403 * 127.58772 * 7 6 5 22 22 N 1.36458 * 107.05047 * 359.72497 * 6 5 4 23 23 C 1.46502 * 127.13588 * 180.02562 * 22 6 5 24 24 C 1.52998 * 109.47205 * 87.08359 * 23 22 6 25 25 H 1.08999 * 110.80706 * 309.16654 * 24 23 22 26 26 C 1.54807 * 110.90987 * 185.52974 * 24 23 22 27 27 C 1.54101 * 104.18897 * 220.92534 * 26 24 23 28 28 O 1.43736 * 107.29277 * 357.96934 * 27 26 24 29 29 C 1.44381 * 106.97822 * 26.51428 * 28 27 26 30 30 H 1.08994 * 109.46768 * 173.76749 * 1 2 3 31 31 H 1.09002 * 109.46564 * 293.77016 * 1 2 3 32 32 H 1.08998 * 109.46722 * 53.76721 * 1 2 3 33 33 H 1.09002 * 109.47290 * 119.99249 * 2 1 3 34 34 H 1.09000 * 109.47126 * 239.99759 * 2 1 3 35 35 H 1.08996 * 109.45907 * 294.17499 * 8 7 6 36 36 H 1.08993 * 109.46127 * 54.15643 * 8 7 6 37 37 H 1.08997 * 109.50765 * 179.11752 * 9 8 7 38 38 H 1.09006 * 109.50151 * 299.19853 * 9 8 7 39 39 H 1.08992 * 109.52303 * 62.25509 * 10 9 8 40 40 H 1.09006 * 109.51972 * 182.37584 * 10 9 8 41 41 H 0.97000 * 120.00218 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.46098 * 305.85398 * 21 7 6 43 43 H 1.09005 * 109.46140 * 65.82271 * 21 7 6 44 44 H 1.09000 * 109.46941 * 207.08881 * 23 22 6 45 45 H 1.09005 * 109.46927 * 327.08406 * 23 22 6 46 46 H 1.09004 * 110.48647 * 339.59887 * 26 24 23 47 47 H 1.09005 * 110.48773 * 102.24578 * 26 24 23 48 48 H 1.08998 * 109.87862 * 117.39787 * 27 26 24 49 49 H 1.08998 * 109.87794 * 238.39645 * 27 26 24 50 50 H 1.08999 * 110.62012 * 201.43958 * 29 28 27 51 51 H 1.08997 * 110.61632 * 78.44111 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.0449 2.2355 -1.0168 5 7 2.5368 3.3700 -0.6666 6 6 2.8763 3.3367 0.6005 7 7 3.4441 4.3699 1.3286 8 6 4.8556 4.0919 1.6238 9 6 5.4869 5.3118 2.2986 10 6 4.7276 5.6238 3.5912 11 6 3.2513 5.8617 3.2619 12 1 3.1595 6.7278 2.6066 13 6 2.4856 6.1113 4.5358 14 1 1.6736 5.4563 4.8149 15 6 2.8217 7.1761 5.3447 16 7 3.8107 7.9735 5.0050 17 14 1.8721 7.4859 6.9233 18 1 0.8160 6.4533 7.0764 19 1 2.8004 7.4191 8.0805 20 1 1.2457 8.8312 6.8682 21 6 2.6848 4.6259 2.5592 22 7 2.5651 2.0921 1.0655 23 6 2.7607 1.5813 2.4246 24 6 1.5429 1.9325 3.2816 25 1 1.3046 2.9930 3.1996 26 6 1.7724 1.5304 4.7588 27 6 0.4207 0.9390 5.2036 28 8 -0.4826 1.0536 4.0914 29 6 0.3228 1.0592 2.8931 30 1 -0.3632 -1.0216 -0.1116 31 1 -0.3632 0.4142 0.9405 32 1 -0.3633 0.6074 -0.8289 33 1 1.8934 -0.5137 0.8901 34 1 1.8934 -0.5139 -0.8900 35 1 4.9247 3.2320 2.2899 36 1 5.3849 3.8761 0.6958 37 1 6.5302 5.0996 2.5317 38 1 5.4310 6.1687 1.6272 39 1 4.8166 4.7823 4.2781 40 1 5.1473 6.5173 4.0535 41 1 4.0469 8.7228 5.5740 42 1 1.6375 4.7976 2.3106 43 1 2.7642 3.7634 3.2210 44 1 2.8819 0.4985 2.3918 45 1 3.6527 2.0338 2.8579 46 1 2.5596 0.7801 4.8321 47 1 2.0215 2.4060 5.3583 48 1 0.5456 -0.1097 5.4732 49 1 0.0346 1.4972 6.0565 50 1 -0.2241 1.5103 2.0652 51 1 0.6399 0.0478 2.6392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597368815.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:52 Heat of formation + Delta-G solvation = 41.528283 kcal Electronic energy + Delta-G solvation = -31724.880469 eV Core-core repulsion = 27853.779293 eV Total energy + Delta-G solvation = -3871.101176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.93587 -39.70993 -38.57514 -35.63809 -34.49920 -33.51366 -32.29210 -31.67339 -30.18772 -29.65969 -28.52229 -26.48698 -25.18134 -24.47015 -23.54660 -23.02410 -21.91504 -21.19780 -20.63240 -20.27893 -18.91604 -17.69547 -16.71022 -16.56093 -16.25558 -15.76585 -15.48157 -15.35942 -15.09343 -14.63277 -14.38138 -14.09462 -13.85658 -13.62398 -13.29743 -12.93033 -12.87682 -12.77530 -12.65182 -12.45171 -12.28341 -11.99818 -11.95683 -11.64844 -11.56445 -11.22447 -11.11644 -11.03538 -10.90326 -10.81274 -10.66708 -10.32565 -10.24847 -10.06712 -9.98768 -9.84451 -9.70607 -9.35738 -9.01239 -8.70890 -8.48402 -8.24836 -6.10929 -4.18321 1.84911 2.41838 3.05076 3.21233 3.30714 3.32448 3.68305 3.76876 4.14138 4.22602 4.34829 4.40032 4.49476 4.65015 4.74216 4.87457 4.92080 5.00992 5.04993 5.13214 5.19756 5.24703 5.27119 5.37796 5.45168 5.50667 5.53320 5.58728 5.62240 5.70268 5.76038 5.80398 5.88265 5.95667 6.00443 6.02859 6.08763 6.19352 6.23620 6.44721 6.48140 6.61132 6.65060 6.77501 6.91253 7.16317 7.27229 7.59188 7.62020 7.88210 7.98533 8.27336 8.84551 9.02020 9.47145 10.95171 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011300 B = 0.004915 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.194286 B = 5695.818359 C = 7410.974172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.032 4.032 3 C 0.169 3.831 4 N -0.290 5.290 5 N -0.275 5.275 6 C 0.363 3.637 7 N -0.443 5.443 8 C 0.067 3.933 9 C -0.118 4.118 10 C -0.112 4.112 11 C 0.057 3.943 12 H 0.040 0.960 13 C -0.517 4.517 14 H 0.054 0.946 15 C 0.067 3.933 16 N -0.884 5.884 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.056 3.944 22 N -0.498 5.498 23 C 0.112 3.888 24 C -0.154 4.154 25 H 0.116 0.884 26 C -0.148 4.148 27 C 0.048 3.952 28 O -0.374 6.374 29 C 0.049 3.951 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.031 0.969 40 H 0.097 0.903 41 H 0.261 0.739 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.094 0.906 48 H 0.058 0.942 49 H 0.087 0.913 50 H 0.098 0.902 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 -17.913 -1.877 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.072 4.072 3 C -0.099 4.099 4 N -0.130 5.130 5 N -0.116 5.116 6 C 0.008 3.992 7 N -0.167 5.167 8 C -0.060 4.060 9 C -0.156 4.156 10 C -0.150 4.150 11 C 0.038 3.962 12 H 0.058 0.942 13 C -0.555 4.555 14 H 0.072 0.928 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.070 4.070 22 N -0.196 5.196 23 C -0.011 4.011 24 C -0.173 4.173 25 H 0.134 0.866 26 C -0.186 4.186 27 C -0.029 4.029 28 O -0.292 6.292 29 C -0.027 4.027 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.114 0.886 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.113 0.887 48 H 0.076 0.924 49 H 0.106 0.894 50 H 0.115 0.885 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.182 -16.747 -3.492 17.148 hybrid contribution 0.084 -0.862 2.717 2.852 sum -1.098 -17.608 -0.775 17.660 Atomic orbital electron populations 1.22106 0.93533 1.02750 1.03819 1.19945 0.96881 0.86663 1.03722 1.24657 1.02528 0.98193 0.84541 1.74106 1.17658 0.97592 1.23641 1.74522 1.15307 1.14027 1.07739 1.23564 1.00927 0.82227 0.92502 1.59262 1.03087 1.30788 1.23612 1.22217 0.86154 0.98377 0.99278 1.21726 0.97993 0.96443 0.99420 1.21707 0.97855 1.01962 0.93482 1.18704 0.91853 0.91087 0.94589 0.94211 1.21033 1.16494 1.12256 1.05748 0.92760 1.24894 0.95014 0.95704 0.97882 1.69877 1.28159 1.16347 1.37868 0.86583 0.79959 0.78351 0.83397 1.19812 1.21032 1.20896 1.22969 0.96725 1.01088 0.86181 1.47620 1.48030 1.13107 1.10802 1.22018 0.99483 1.00619 0.78981 1.23532 0.94846 1.04008 0.94963 0.86646 1.22944 0.98181 1.02607 0.94904 1.23154 0.89077 1.00053 0.90570 1.88902 1.30652 1.94992 1.14696 1.23992 0.91433 0.98301 0.88973 0.91471 0.91425 0.91348 0.90659 0.88660 0.95247 0.91330 0.92560 0.91251 0.94978 0.88476 0.92893 0.91644 0.93876 0.88604 0.88099 0.90455 0.88714 0.92401 0.89426 0.88456 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.62 37.16 0.36 -1.07 16 2 C -0.03 -0.30 5.86 -27.88 -0.16 -0.46 16 3 C 0.17 2.35 7.21 -154.01 -1.11 1.24 16 4 N -0.29 -5.12 12.18 32.99 0.40 -4.72 16 5 N -0.28 -5.47 12.23 30.32 0.37 -5.10 16 6 C 0.36 6.50 6.68 -318.87 -2.13 4.37 16 7 N -0.44 -8.28 4.71 -174.55 -0.82 -9.10 16 8 C 0.07 1.11 5.30 -3.83 -0.02 1.09 16 9 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 10 C -0.11 -2.38 5.02 -26.61 -0.13 -2.51 16 11 C 0.06 1.31 2.27 -91.69 -0.21 1.10 16 12 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 13 C -0.52 -13.02 8.56 -34.44 -0.29 -13.32 16 14 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 15 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.88 -23.82 11.35 55.43 0.63 -23.19 16 17 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.06 1.09 3.05 -3.84 -0.01 1.08 16 22 N -0.50 -7.09 2.75 -114.08 -0.31 -7.40 16 23 C 0.11 1.26 4.45 -4.04 -0.02 1.24 16 24 C -0.15 -1.85 2.36 -88.61 -0.21 -2.06 16 25 H 0.12 1.78 5.07 -51.93 -0.26 1.52 16 26 C -0.15 -1.55 6.60 -25.20 -0.17 -1.72 16 27 C 0.05 0.51 7.70 37.73 0.29 0.80 16 28 O -0.37 -4.89 11.52 -35.23 -0.41 -5.30 16 29 C 0.05 0.55 5.30 38.21 0.20 0.76 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.63 3.75 -51.93 -0.19 0.43 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.53 6.32 -51.93 -0.33 0.20 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.44 6.08 -51.93 -0.32 0.13 16 36 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.10 2.36 6.15 -51.93 -0.32 2.04 16 41 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.07 1.38 7.70 -51.93 -0.40 0.98 16 43 H 0.04 0.76 3.89 -51.93 -0.20 0.56 16 44 H 0.10 0.78 6.83 -51.93 -0.35 0.43 16 45 H 0.10 1.19 5.24 -51.93 -0.27 0.92 16 46 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 47 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.10 1.19 6.18 -51.93 -0.32 0.87 16 51 H 0.06 0.56 6.52 -51.93 -0.34 0.22 16 LS Contribution 374.12 15.07 5.64 5.64 Total: -1.00 -29.95 374.12 -11.30 -41.25 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.91 Total: 2.88 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -3.87 Total: -10.08 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.27 Total: -49.52 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.41 Total: -5.30 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.95 -11.30 -41.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597368815.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.778 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds