Wall clock time and date at job start Tue Mar 31 2020 20:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47621 * 2 1 4 4 C 1.50706 * 109.47082 * 120.00297 * 2 1 3 5 5 N 1.30494 * 125.64967 * 300.03991 * 4 2 1 6 6 C 1.34130 * 109.25557 * 179.97438 * 5 4 2 7 7 C 1.34668 * 108.02026 * 359.73241 * 6 5 4 8 8 N 1.35042 * 125.64745 * 119.99753 * 4 2 1 9 9 C 1.46499 * 126.40124 * 0.03737 * 8 4 2 10 10 C 1.50694 * 109.47063 * 85.00195 * 9 8 4 11 11 O 1.21277 * 120.00007 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00003 * 179.72508 * 10 9 8 13 13 C 1.46501 * 119.99985 * 180.27265 * 12 10 9 14 14 C 1.52998 * 109.46684 * 180.02562 * 13 12 10 15 15 C 1.53036 * 109.46202 * 295.02675 * 14 13 12 16 16 C 1.53197 * 109.31397 * 178.60554 * 15 14 13 17 17 N 1.46924 * 108.76529 * 54.65496 * 16 15 14 18 18 C 1.36929 * 120.62944 * 126.40745 * 17 16 15 19 19 H 1.07999 * 120.00357 * 331.82659 * 18 17 16 20 20 C 1.38811 * 120.00086 * 151.82604 * 18 17 16 21 21 N 1.31618 * 119.99936 * 343.07060 * 20 18 17 22 22 Si 1.86797 * 120.00367 * 163.07579 * 20 18 17 23 23 H 1.48497 * 109.47748 * 89.99778 * 22 20 18 24 24 H 1.48503 * 109.47206 * 210.00225 * 22 20 18 25 25 H 1.48510 * 109.46866 * 329.99554 * 22 20 18 26 26 C 1.46929 * 118.73923 * 306.38424 * 17 16 15 27 27 C 1.53043 * 109.45595 * 174.97327 * 14 13 12 28 28 H 1.08993 * 109.47004 * 300.00151 * 1 2 3 29 29 H 1.09000 * 109.46634 * 59.99598 * 1 2 3 30 30 H 1.08996 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47192 * 239.99783 * 2 1 3 32 32 H 1.09000 * 109.47413 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47224 * 300.00392 * 3 2 1 34 34 H 1.09001 * 109.46541 * 60.00206 * 3 2 1 35 35 H 1.07999 * 125.98411 * 180.02562 * 6 5 4 36 36 H 1.08001 * 126.58981 * 180.27845 * 7 6 5 37 37 H 1.08996 * 109.46741 * 324.99647 * 9 8 4 38 38 H 1.09005 * 109.47079 * 204.99907 * 9 8 4 39 39 H 0.96998 * 119.99500 * 0.27781 * 12 10 9 40 40 H 1.08991 * 109.46922 * 299.99874 * 13 12 10 41 41 H 1.08993 * 109.46937 * 60.00306 * 13 12 10 42 42 H 1.08997 * 109.46117 * 55.00270 * 14 13 12 43 43 H 1.09005 * 109.49896 * 298.57002 * 15 14 13 44 44 H 1.09004 * 109.50085 * 58.66409 * 15 14 13 45 45 H 1.09004 * 109.59587 * 294.86964 * 16 15 14 46 46 H 1.09004 * 109.70248 * 174.50844 * 16 15 14 47 47 H 0.97004 * 120.00095 * 180.02562 * 21 20 18 48 48 H 1.08996 * 109.58497 * 293.82178 * 26 17 16 49 49 H 1.08999 * 109.70245 * 173.46429 * 26 17 16 50 50 H 1.08994 * 109.50095 * 301.33292 * 27 14 13 51 51 H 1.09000 * 109.49803 * 61.43929 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7854 -0.3626 2.4637 6 6 2.3925 -1.2218 3.2957 7 6 3.0354 -2.1403 2.5497 8 7 2.8119 -1.8131 1.2395 9 6 3.3190 -2.5289 0.0661 10 6 4.5913 -1.8762 -0.4094 11 8 5.0310 -0.9082 0.1741 12 7 5.2434 -2.3714 -1.4800 13 6 6.4835 -1.7405 -1.9386 14 6 7.0156 -2.4911 -3.1611 15 6 7.4100 -3.9128 -2.7546 16 6 7.9096 -4.6721 -3.9878 17 7 8.9933 -3.9004 -4.6112 18 6 10.2076 -4.4810 -4.8632 19 1 10.5545 -5.2968 -4.2464 20 6 10.9926 -4.0210 -5.9115 21 7 10.4582 -3.2772 -6.8567 22 14 12.8075 -4.4577 -5.9808 23 1 12.9833 -5.7258 -6.7334 24 1 13.5528 -3.3696 -6.6634 25 1 13.3295 -4.6248 -4.6006 26 6 8.7493 -2.4940 -4.9595 27 6 8.2401 -1.7592 -3.7155 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 2.3660 -1.1861 4.3748 36 1 3.6174 -2.9735 2.9150 37 1 2.5745 -2.4960 -0.7292 38 1 3.5205 -3.5665 0.3325 39 1 4.8915 -3.1454 -1.9469 40 1 6.2854 -0.7030 -2.2076 41 1 7.2248 -1.7737 -1.1403 42 1 6.2408 -2.5339 -3.9265 43 1 8.2024 -3.8709 -2.0072 44 1 6.5432 -4.4258 -2.3381 45 1 7.0919 -4.7936 -4.6984 46 1 8.2832 -5.6518 -3.6897 47 1 11.0067 -2.9561 -7.5895 48 1 8.0002 -2.4379 -5.7493 49 1 9.6763 -2.0340 -5.3017 50 1 7.9641 -0.7393 -3.9830 51 1 9.0245 -1.7379 -2.9590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602111302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:03 Heat of formation + Delta-G solvation = 31.472169 kcal Electronic energy + Delta-G solvation = -29008.600930 eV Core-core repulsion = 25137.063688 eV Total energy + Delta-G solvation = -3871.537242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.39283 -39.87061 -37.93479 -35.58338 -35.15744 -34.22619 -32.97918 -30.94592 -29.87812 -29.11324 -28.41649 -27.36594 -26.47347 -24.04944 -23.07951 -22.38204 -21.64545 -21.18959 -20.87349 -19.42599 -19.13858 -17.75206 -17.55215 -16.77624 -16.03155 -15.69599 -15.19713 -15.08618 -14.84111 -14.50713 -14.21064 -13.94318 -13.84201 -13.66738 -13.58796 -13.53581 -13.28927 -13.08889 -12.78689 -12.44871 -12.40446 -12.35284 -11.94976 -11.73875 -11.42799 -11.42141 -11.20813 -11.05658 -10.76086 -10.61662 -10.56620 -10.32940 -10.29248 -10.10057 -9.99862 -9.71846 -9.63573 -9.48322 -9.21906 -8.52355 -8.49374 -6.73071 -5.84617 -3.27139 1.77030 2.25195 2.36386 3.01048 3.07139 3.33433 3.40982 3.43166 4.11157 4.23709 4.32168 4.42601 4.45001 4.54405 4.79956 4.88638 4.97970 5.01009 5.10444 5.26340 5.29293 5.34971 5.42666 5.45946 5.51147 5.60052 5.65058 5.72215 5.74078 5.80057 5.91946 5.96136 6.01248 6.08530 6.14248 6.22122 6.23292 6.33934 6.51119 6.58864 6.60846 6.66484 6.72055 6.88391 6.92143 7.21952 7.30692 7.59261 7.74214 7.89657 7.96799 8.39664 9.15864 9.79249 10.35564 11.23985 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026856 B = 0.002033 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.344529 B =13769.620736 C =14168.836123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.139 4.139 4 C 0.228 3.772 5 N -0.487 5.487 6 C -0.027 4.027 7 C -0.052 4.052 8 N -0.441 5.441 9 C 0.082 3.918 10 C 0.491 3.509 11 O -0.521 6.521 12 N -0.719 5.719 13 C 0.124 3.876 14 C -0.090 4.090 15 C -0.127 4.127 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.172 3.828 27 C -0.133 4.133 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.169 0.831 36 H 0.172 0.828 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.402 0.598 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.053 0.947 47 H 0.254 0.746 48 H 0.018 0.982 49 H 0.088 0.912 50 H 0.051 0.949 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.115 2.184 12.970 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 C -0.197 4.197 4 C -0.035 4.035 5 N -0.205 5.205 6 C -0.175 4.175 7 C -0.184 4.184 8 N -0.124 5.124 9 C -0.045 4.045 10 C 0.274 3.726 11 O -0.396 6.396 12 N -0.372 5.372 13 C 0.001 3.999 14 C -0.109 4.109 15 C -0.166 4.166 16 C 0.019 3.981 17 N -0.315 5.315 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.046 3.954 27 C -0.173 4.173 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.186 0.814 36 H 0.189 0.811 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.237 0.763 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.034 0.966 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.036 0.964 49 H 0.106 0.894 50 H 0.070 0.930 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.096 3.544 13.391 23.590 hybrid contribution 1.494 -1.483 -0.528 2.170 sum -17.602 2.061 12.863 21.898 Atomic orbital electron populations 1.21790 0.93052 1.02032 1.02850 1.19536 0.96425 0.96175 0.90647 1.21760 1.01734 0.93804 1.02440 1.23164 0.96344 0.88266 0.95684 1.70171 1.24523 1.26852 0.98925 1.22221 1.01476 0.94264 0.99509 1.22632 1.08200 1.05037 0.82549 1.44832 1.38509 1.23223 1.05833 1.21693 0.96022 0.97677 0.89111 1.20653 0.85816 0.84958 0.81140 1.90795 1.67062 1.26216 1.55515 1.46045 1.26476 1.33894 1.30738 1.21633 0.84323 0.96730 0.97172 1.21319 0.98600 0.95871 0.95070 1.22081 0.99500 0.95033 1.00009 1.20885 0.91230 0.94143 0.91879 1.44043 1.09874 1.06579 1.71000 1.19154 0.93344 1.16677 1.09139 0.91786 1.25047 0.99064 1.00572 0.94946 1.70022 1.34459 1.39230 1.11007 0.86316 0.85317 0.77601 0.77653 1.21376 1.21511 1.20488 1.20760 1.00217 0.83895 0.90539 1.22184 0.95855 0.98042 1.01204 0.91267 0.91792 0.92849 0.90651 0.92172 0.91969 0.91453 0.81400 0.81069 0.86186 0.85874 0.76330 0.91622 0.91486 0.91215 0.92163 0.93580 0.96621 0.92862 0.93593 0.96424 0.89368 0.93027 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 2 C -0.01 -0.07 3.25 -91.77 -0.30 -0.37 16 3 C -0.14 -1.39 9.18 37.16 0.34 -1.04 16 4 C 0.23 2.67 6.40 -155.42 -0.99 1.68 16 5 N -0.49 -6.46 11.25 -10.81 -0.12 -6.58 16 6 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 7 C -0.05 -0.54 11.58 -16.56 -0.19 -0.73 16 8 N -0.44 -4.60 2.24 -115.19 -0.26 -4.86 16 9 C 0.08 0.60 6.17 -5.20 -0.03 0.57 16 10 C 0.49 5.33 7.90 -10.99 -0.09 5.24 16 11 O -0.52 -8.18 16.42 5.56 0.09 -8.09 16 12 N -0.72 -7.03 5.27 -60.30 -0.32 -7.35 16 13 C 0.12 1.57 5.06 -4.04 -0.02 1.55 16 14 C -0.09 -1.28 2.19 -90.58 -0.20 -1.48 16 15 C -0.13 -1.90 5.25 -26.61 -0.14 -2.04 16 16 C 0.15 2.79 6.52 -3.71 -0.02 2.76 16 17 N -0.59 -14.13 2.99 -172.31 -0.52 -14.65 16 18 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 19 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 20 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 21 N -0.90 -25.60 11.19 55.49 0.62 -24.98 16 22 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.17 3.88 5.30 -3.71 -0.02 3.86 16 27 C -0.13 -2.33 5.36 -26.61 -0.14 -2.47 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.61 6.85 -51.93 -0.36 0.26 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.12 0.56 7.28 -51.93 -0.38 0.19 16 38 H 0.12 0.55 8.13 -51.93 -0.42 0.13 16 39 H 0.40 2.87 7.65 -40.82 -0.31 2.55 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.54 7.15 -51.93 -0.37 0.17 16 45 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.09 2.27 6.07 -51.93 -0.31 1.96 16 50 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 407.33 15.07 6.14 6.14 Total: -1.00 -34.07 407.33 -10.18 -44.25 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.88 Total: 0.52 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -1.91 Total: -0.65 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: -0.59 Total: -58.42 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.09 Total: -8.09 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.07 -10.18 -44.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602111302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.723 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds