Wall clock time and date at job start Tue Mar 31 2020 20:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47621 * 2 1 4 4 C 1.50706 * 109.47082 * 120.00297 * 2 1 3 5 5 N 1.30494 * 125.64967 * 300.03991 * 4 2 1 6 6 C 1.34130 * 109.25557 * 179.97438 * 5 4 2 7 7 C 1.34668 * 108.02026 * 359.73241 * 6 5 4 8 8 N 1.35042 * 125.64745 * 119.99753 * 4 2 1 9 9 C 1.46499 * 126.40124 * 0.03737 * 8 4 2 10 10 C 1.50694 * 109.47063 * 85.00195 * 9 8 4 11 11 O 1.21277 * 120.00007 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00003 * 179.72508 * 10 9 8 13 13 C 1.46501 * 119.99985 * 180.27265 * 12 10 9 14 14 C 1.52998 * 109.46684 * 180.02562 * 13 12 10 15 15 C 1.53036 * 109.46202 * 295.02675 * 14 13 12 16 16 C 1.53197 * 109.31397 * 178.60554 * 15 14 13 17 17 N 1.46924 * 108.76529 * 54.65496 * 16 15 14 18 18 C 1.36929 * 120.62944 * 126.40745 * 17 16 15 19 19 H 1.07999 * 120.00357 * 331.82659 * 18 17 16 20 20 C 1.38811 * 120.00086 * 151.82604 * 18 17 16 21 21 N 1.31618 * 119.99936 * 343.07060 * 20 18 17 22 22 Si 1.86797 * 120.00367 * 163.07579 * 20 18 17 23 23 H 1.48497 * 109.47748 * 89.99778 * 22 20 18 24 24 H 1.48503 * 109.47206 * 210.00225 * 22 20 18 25 25 H 1.48510 * 109.46866 * 329.99554 * 22 20 18 26 26 C 1.46929 * 118.73923 * 306.38424 * 17 16 15 27 27 C 1.53043 * 109.45595 * 174.97327 * 14 13 12 28 28 H 1.08993 * 109.47004 * 300.00151 * 1 2 3 29 29 H 1.09000 * 109.46634 * 59.99598 * 1 2 3 30 30 H 1.08996 * 109.47305 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47192 * 239.99783 * 2 1 3 32 32 H 1.09000 * 109.47413 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47224 * 300.00392 * 3 2 1 34 34 H 1.09001 * 109.46541 * 60.00206 * 3 2 1 35 35 H 1.07999 * 125.98411 * 180.02562 * 6 5 4 36 36 H 1.08001 * 126.58981 * 180.27845 * 7 6 5 37 37 H 1.08996 * 109.46741 * 324.99647 * 9 8 4 38 38 H 1.09005 * 109.47079 * 204.99907 * 9 8 4 39 39 H 0.96998 * 119.99500 * 0.27781 * 12 10 9 40 40 H 1.08991 * 109.46922 * 299.99874 * 13 12 10 41 41 H 1.08993 * 109.46937 * 60.00306 * 13 12 10 42 42 H 1.08997 * 109.46117 * 55.00270 * 14 13 12 43 43 H 1.09005 * 109.49896 * 298.57002 * 15 14 13 44 44 H 1.09004 * 109.50085 * 58.66409 * 15 14 13 45 45 H 1.09004 * 109.59587 * 294.86964 * 16 15 14 46 46 H 1.09004 * 109.70248 * 174.50844 * 16 15 14 47 47 H 0.97004 * 120.00095 * 180.02562 * 21 20 18 48 48 H 1.08996 * 109.58497 * 293.82178 * 26 17 16 49 49 H 1.08999 * 109.70245 * 173.46429 * 26 17 16 50 50 H 1.08994 * 109.50095 * 301.33292 * 27 14 13 51 51 H 1.09000 * 109.49803 * 61.43929 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7854 -0.3626 2.4637 6 6 2.3925 -1.2218 3.2957 7 6 3.0354 -2.1403 2.5497 8 7 2.8119 -1.8131 1.2395 9 6 3.3190 -2.5289 0.0661 10 6 4.5913 -1.8762 -0.4094 11 8 5.0310 -0.9082 0.1741 12 7 5.2434 -2.3714 -1.4800 13 6 6.4835 -1.7405 -1.9386 14 6 7.0156 -2.4911 -3.1611 15 6 7.4100 -3.9128 -2.7546 16 6 7.9096 -4.6721 -3.9878 17 7 8.9933 -3.9004 -4.6112 18 6 10.2076 -4.4810 -4.8632 19 1 10.5545 -5.2968 -4.2464 20 6 10.9926 -4.0210 -5.9115 21 7 10.4582 -3.2772 -6.8567 22 14 12.8075 -4.4577 -5.9808 23 1 12.9833 -5.7258 -6.7334 24 1 13.5528 -3.3696 -6.6634 25 1 13.3295 -4.6248 -4.6006 26 6 8.7493 -2.4940 -4.9595 27 6 8.2401 -1.7592 -3.7155 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 2.3660 -1.1861 4.3748 36 1 3.6174 -2.9735 2.9150 37 1 2.5745 -2.4960 -0.7292 38 1 3.5205 -3.5665 0.3325 39 1 4.8915 -3.1454 -1.9469 40 1 6.2854 -0.7030 -2.2076 41 1 7.2248 -1.7737 -1.1403 42 1 6.2408 -2.5339 -3.9265 43 1 8.2024 -3.8709 -2.0072 44 1 6.5432 -4.4258 -2.3381 45 1 7.0919 -4.7936 -4.6984 46 1 8.2832 -5.6518 -3.6897 47 1 11.0067 -2.9561 -7.5895 48 1 8.0002 -2.4379 -5.7493 49 1 9.6763 -2.0340 -5.3017 50 1 7.9641 -0.7393 -3.9830 51 1 9.0245 -1.7379 -2.9590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602111302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:01 Heat of formation + Delta-G solvation = 10.506508 kcal Electronic energy + Delta-G solvation = -29009.510069 eV Core-core repulsion = 25137.063688 eV Total energy + Delta-G solvation = -3872.446381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.14427 -40.80328 -39.33981 -36.46996 -36.27452 -34.99668 -34.49664 -32.57714 -31.43217 -29.92891 -29.36757 -28.04775 -27.79652 -25.63679 -23.90897 -23.76673 -22.81667 -22.27642 -21.74438 -20.74123 -20.06326 -18.81170 -18.42125 -18.25009 -16.90901 -16.84882 -16.51009 -15.99699 -15.89271 -15.64924 -15.30885 -15.24305 -15.10324 -14.79553 -14.68619 -14.52632 -14.30800 -14.00391 -13.86780 -13.79016 -13.61509 -13.21660 -13.01384 -12.99484 -12.81438 -12.56137 -12.40391 -12.27575 -12.13010 -12.03011 -11.89769 -11.84690 -11.63499 -11.48660 -11.18277 -11.10901 -10.91239 -10.54719 -10.44256 -10.15294 -9.26482 -8.66279 -7.87964 -5.32288 1.00087 1.44731 1.46409 1.47167 1.55908 1.69626 2.21180 2.27230 2.50644 3.26902 3.41851 3.61276 3.71660 3.73048 3.79277 3.85655 3.94415 4.07073 4.10145 4.13938 4.20396 4.35867 4.50928 4.54436 4.60514 4.69288 4.72644 4.74115 4.79322 4.80374 4.90114 4.93634 4.95428 5.02790 5.05629 5.13574 5.27229 5.28835 5.29467 5.32850 5.35525 5.42501 5.44272 5.55940 5.66152 5.79439 5.87059 6.18294 6.39923 6.48584 7.13605 7.15940 7.18550 7.88913 8.38601 9.18043 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026856 B = 0.002033 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.344529 B =13769.620736 C =14168.836123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.009 4.009 3 C -0.134 4.134 4 C 0.213 3.787 5 N -0.524 5.524 6 C -0.057 4.057 7 C -0.050 4.050 8 N -0.445 5.445 9 C 0.083 3.917 10 C 0.493 3.507 11 O -0.575 6.575 12 N -0.705 5.705 13 C 0.139 3.861 14 C -0.077 4.077 15 C -0.114 4.114 16 C 0.138 3.862 17 N -0.613 5.613 18 C -0.261 4.261 19 H 0.064 0.936 20 C -0.052 4.052 21 N -0.934 5.934 22 Si 0.962 3.038 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.177 3.823 27 C -0.123 4.123 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.032 0.968 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.181 0.819 36 H 0.200 0.800 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.419 0.581 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.047 0.953 44 H 0.091 0.909 45 H 0.021 0.979 46 H 0.050 0.950 47 H 0.249 0.751 48 H 0.000 1.000 49 H 0.048 0.952 50 H 0.067 0.933 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.754 0.598 13.537 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C -0.192 4.192 4 C -0.050 4.050 5 N -0.242 5.242 6 C -0.204 4.204 7 C -0.182 4.182 8 N -0.127 5.127 9 C -0.042 4.042 10 C 0.279 3.721 11 O -0.453 6.453 12 N -0.358 5.358 13 C 0.015 3.985 14 C -0.096 4.096 15 C -0.152 4.152 16 C 0.013 3.987 17 N -0.337 5.337 18 C -0.391 4.391 19 H 0.082 0.918 20 C -0.247 4.247 21 N -0.580 5.580 22 Si 0.791 3.209 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.198 1.198 26 C 0.051 3.949 27 C -0.163 4.163 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.198 0.802 36 H 0.217 0.783 37 H 0.171 0.829 38 H 0.179 0.821 39 H 0.257 0.743 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.039 0.961 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.018 0.982 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.767 1.908 13.962 25.096 hybrid contribution 1.991 -1.011 -0.693 2.339 sum -18.775 0.896 13.269 23.008 Atomic orbital electron populations 1.21731 0.91789 1.02523 1.02947 1.19667 0.97427 0.95386 0.90468 1.21701 0.99853 0.94851 1.02805 1.23567 0.96659 0.88891 0.95880 1.70115 1.25900 1.28088 1.00143 1.22632 1.02395 0.94878 1.00453 1.23117 1.07356 1.05178 0.82558 1.45026 1.37996 1.23032 1.06685 1.22015 0.94659 0.98511 0.89065 1.21243 0.86436 0.84077 0.80362 1.90793 1.68647 1.28710 1.57179 1.45822 1.25305 1.34117 1.30593 1.21226 0.85223 0.96371 0.95685 1.21141 0.97246 0.95176 0.95992 1.21935 1.00728 0.95090 0.97490 1.21100 0.90019 0.94255 0.93294 1.44335 1.10480 1.07483 1.71375 1.19475 0.94778 1.16278 1.08583 0.91820 1.25757 1.02687 1.01263 0.94994 1.70165 1.35480 1.40765 1.11618 0.85357 0.80883 0.77033 0.77668 1.21054 1.22002 1.19776 1.20555 0.97956 0.84012 0.92331 1.21982 0.97110 0.98697 0.98518 0.92943 0.89878 0.92139 0.88933 0.94859 0.89829 0.92849 0.80199 0.78265 0.82871 0.82073 0.74253 0.92177 0.92952 0.89978 0.93440 0.89049 0.96135 0.93103 0.94170 0.98184 0.93326 0.91449 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.18 71.98 0.66 -1.12 16 2 C -0.01 -0.16 3.25 -11.54 -0.04 -0.20 16 3 C -0.13 -2.60 9.18 71.98 0.66 -1.94 16 4 C 0.21 4.73 6.40 138.13 0.88 5.61 16 5 N -0.52 -13.86 11.25 -188.13 -2.12 -15.97 16 6 C -0.06 -1.28 11.87 83.52 0.99 -0.29 16 7 C -0.05 -0.92 11.58 83.09 0.96 0.04 16 8 N -0.45 -8.14 2.24 -518.35 -1.16 -9.30 16 9 C 0.08 0.85 6.17 85.63 0.53 1.38 16 10 C 0.49 9.11 7.90 87.65 0.69 9.80 16 11 O -0.57 -17.22 16.42 -3.02 -0.05 -17.27 16 12 N -0.71 -10.97 5.27 -463.08 -2.44 -13.41 16 13 C 0.14 3.14 5.06 86.38 0.44 3.58 16 14 C -0.08 -1.98 2.19 -10.77 -0.02 -2.01 16 15 C -0.11 -3.04 5.25 30.67 0.16 -2.88 16 16 C 0.14 5.08 6.52 86.36 0.56 5.65 16 17 N -0.61 -29.32 2.99 -699.08 -2.09 -31.41 16 18 C -0.26 -14.03 9.58 84.03 0.81 -13.22 16 19 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 20 C -0.05 -2.85 4.92 84.86 0.42 -2.43 16 21 N -0.93 -54.47 11.19 21.65 0.24 -54.23 16 22 Si 0.96 44.40 29.59 68.60 2.03 46.43 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 C 0.18 8.14 5.30 86.36 0.46 8.59 16 27 C -0.12 -4.24 5.36 30.67 0.16 -4.07 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.22 6.85 -2.38 -0.02 1.21 16 32 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.15 0.60 7.28 -2.39 -0.02 0.58 16 38 H 0.16 0.48 8.13 -2.38 -0.02 0.47 16 39 H 0.42 3.69 7.65 -92.71 -0.71 2.98 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.09 1.66 7.15 -2.38 -0.02 1.64 16 45 H 0.02 0.74 8.14 -2.38 -0.02 0.73 16 46 H 0.05 1.86 7.93 -2.38 -0.02 1.84 16 47 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 48 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 49 H 0.05 2.60 6.07 -2.39 -0.01 2.59 16 50 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -78.56 407.33 2.93 -75.63 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.20 Total: 13.04 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 8.32 Total: 6.49 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -7.57 Total: -124.33 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.05 Total: -17.27 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -78.56 2.93 -75.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602111302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.141 kcal (2) G-P(sol) polarization free energy of solvation -78.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds