Wall clock time and date at job start Tue Mar 31 2020 20:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47047 * 2 1 4 4 C 1.50704 * 109.47320 * 120.00213 * 2 1 3 5 5 N 1.30706 * 125.52364 * 299.96037 * 4 2 1 6 6 N 1.40449 * 106.79141 * 179.78343 * 5 4 2 7 7 H 0.96999 * 126.82918 * 180.25592 * 6 5 4 8 8 C 1.34429 * 106.35211 * 0.40206 * 6 5 4 9 9 C 1.50702 * 125.96446 * 179.85457 * 8 6 5 10 10 C 1.53001 * 109.46884 * 84.69108 * 9 8 6 11 11 C 1.53043 * 109.44748 * 64.97179 * 10 9 8 12 12 C 1.53191 * 109.31132 * 181.37889 * 11 10 9 13 13 N 1.46921 * 108.77411 * 305.35957 * 12 11 10 14 14 C 1.34777 * 120.63225 * 233.58641 * 13 12 11 15 15 O 1.21282 * 119.99945 * 180.02562 * 14 13 12 16 16 C 1.50700 * 119.99997 * 0.02846 * 14 13 12 17 17 C 1.52995 * 109.46979 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46979 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00008 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00182 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99709 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00342 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47057 * 89.99255 * 22 20 18 24 24 H 1.48497 * 109.47129 * 209.99458 * 22 20 18 25 25 H 1.48504 * 109.46878 * 329.99415 * 22 20 18 26 26 C 1.46925 * 118.73795 * 53.61317 * 13 12 11 27 27 C 1.53046 * 109.46008 * 185.02824 * 10 9 8 28 28 N 1.30831 * 108.07873 * 359.59984 * 8 6 5 29 29 H 1.08992 * 109.47414 * 299.99552 * 1 2 3 30 30 H 1.08996 * 109.47032 * 60.00075 * 1 2 3 31 31 H 1.09004 * 109.46762 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47204 * 240.00298 * 2 1 3 33 33 H 1.08998 * 109.47246 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47144 * 299.99857 * 3 2 1 35 35 H 1.08996 * 109.47032 * 60.00275 * 3 2 1 36 36 H 1.09008 * 109.46646 * 324.69753 * 9 8 6 37 37 H 1.08994 * 109.47333 * 204.69518 * 9 8 6 38 38 H 1.09002 * 109.46300 * 305.00348 * 10 9 8 39 39 H 1.09004 * 109.49679 * 301.32867 * 11 10 9 40 40 H 1.08994 * 109.49744 * 61.42383 * 11 10 9 41 41 H 1.09002 * 109.58035 * 185.57574 * 12 11 10 42 42 H 1.09002 * 109.58818 * 65.15445 * 12 11 10 43 43 H 1.08997 * 109.46971 * 299.99626 * 16 14 13 44 44 H 1.08999 * 109.47199 * 59.99382 * 16 14 13 45 45 H 1.08997 * 109.47190 * 299.99769 * 17 16 14 46 46 H 1.08999 * 109.47434 * 59.99802 * 17 16 14 47 47 H 0.97004 * 119.99944 * 180.02562 * 21 20 18 48 48 H 1.09003 * 109.59222 * 186.59958 * 26 13 12 49 49 H 1.09006 * 109.70276 * 66.24587 * 26 13 12 50 50 H 1.08996 * 109.49923 * 298.58843 * 27 10 9 51 51 H 1.09001 * 109.49381 * 58.67936 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7847 -0.3589 2.4647 6 7 2.4363 -1.2897 3.2903 7 1 2.4408 -1.3037 4.2602 8 6 3.0552 -2.1557 2.4692 9 6 3.8902 -3.3360 2.8945 10 6 2.9790 -4.5361 3.1599 11 6 2.3067 -4.9643 1.8534 12 6 1.3691 -6.1439 2.1291 13 7 2.1324 -7.2097 2.7924 14 6 2.1365 -8.4626 2.2955 15 8 2.7703 -9.3337 2.8526 16 6 1.3537 -8.7809 1.0478 17 6 1.5271 -10.2609 0.7007 18 6 0.7437 -10.5794 -0.5467 19 1 0.1791 -9.8037 -1.0425 20 6 0.7479 -11.8611 -1.0549 21 7 1.4358 -12.8055 -0.4513 22 14 -0.2225 -12.2558 -2.6015 23 1 0.6387 -12.0466 -3.7931 24 1 -0.6708 -13.6708 -2.5570 25 1 -1.4068 -11.3636 -2.6839 26 6 2.8907 -6.8840 4.0079 27 6 3.8113 -5.6961 3.7113 28 7 2.8017 -1.7983 1.2365 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 4.4360 -3.0859 3.8043 37 1 4.5974 -3.5847 2.1033 38 1 2.2159 -4.2588 3.8872 39 1 1.7330 -4.1303 1.4491 40 1 3.0682 -5.2652 1.1341 41 1 0.9637 -6.5160 1.1881 42 1 0.5548 -5.8198 2.7773 43 1 0.2982 -8.5683 1.2170 44 1 1.7199 -8.1694 0.2232 45 1 2.5827 -10.4732 0.5314 46 1 1.1612 -10.8728 1.5252 47 1 1.4391 -13.7072 -0.8091 48 1 3.4893 -7.7445 4.3069 49 1 2.2022 -6.6211 4.8112 50 1 4.5587 -5.9901 2.9744 51 1 4.3085 -5.3829 4.6294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602172298.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:15 Heat of formation + Delta-G solvation = -9.527809 kcal Electronic energy + Delta-G solvation = -28682.096607 eV Core-core repulsion = 24808.781473 eV Total energy + Delta-G solvation = -3873.315134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.19892 -41.18427 -38.85862 -36.75574 -35.61109 -35.24968 -33.32032 -33.12734 -32.01543 -31.77045 -29.13135 -28.04169 -27.66530 -25.19498 -24.62722 -24.35319 -23.28998 -21.81436 -21.31189 -20.49401 -19.79792 -18.89981 -18.79005 -17.67412 -16.75558 -16.66938 -16.61058 -16.40283 -15.98990 -15.77780 -15.38328 -15.05668 -15.01374 -14.69867 -14.61160 -14.19836 -14.16872 -13.92480 -13.78197 -13.53649 -13.16006 -13.04564 -13.01586 -12.82335 -12.69812 -12.47245 -12.37529 -12.22817 -12.18802 -12.07736 -11.94245 -11.89081 -11.65188 -11.49541 -11.39194 -11.30513 -11.00631 -10.98416 -10.63754 -10.57170 -10.41242 -9.61295 -8.18216 -6.32373 0.61415 1.41759 1.44730 1.55611 1.68482 1.74034 1.88057 2.08068 2.43183 2.95209 3.14499 3.57599 3.61661 3.70701 3.79267 3.83371 4.09989 4.13815 4.20052 4.21374 4.32841 4.37168 4.44913 4.46590 4.49157 4.54448 4.67911 4.71475 4.78700 4.80014 4.87388 4.92850 4.94977 4.98490 5.01172 5.03780 5.07162 5.15003 5.19251 5.30097 5.33146 5.33400 5.45173 5.47759 5.52759 5.61524 5.69278 5.84493 6.17218 6.21882 6.40267 6.85656 7.15129 7.27488 7.37819 8.94476 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.002338 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.047217 B =11972.696629 C =13848.754203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.007 4.007 3 C -0.135 4.135 4 C 0.223 3.777 5 N -0.336 5.336 6 N -0.475 5.475 7 H 0.453 0.547 8 C 0.297 3.703 9 C -0.035 4.035 10 C -0.071 4.071 11 C -0.122 4.122 12 C 0.103 3.897 13 N -0.611 5.611 14 C 0.510 3.490 15 O -0.590 6.590 16 C -0.117 4.117 17 C 0.044 3.956 18 C -0.543 4.543 19 H 0.074 0.926 20 C -0.007 4.007 21 N -0.937 5.937 22 Si 0.974 3.026 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.256 1.256 26 C 0.102 3.898 27 C -0.116 4.116 28 N -0.565 5.565 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.098 0.902 45 H -0.018 1.018 46 H -0.018 1.018 47 H 0.263 0.737 48 H 0.066 0.934 49 H 0.084 0.916 50 H 0.059 0.941 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 32.079 7.992 33.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.194 4.194 4 C -0.060 4.060 5 N -0.165 5.165 6 N -0.194 5.194 7 H 0.301 0.699 8 C 0.018 3.982 9 C -0.075 4.075 10 C -0.091 4.091 11 C -0.160 4.160 12 C -0.019 4.019 13 N -0.345 5.345 14 C 0.300 3.700 15 O -0.470 6.470 16 C -0.156 4.156 17 C 0.006 3.994 18 C -0.581 4.581 19 H 0.092 0.908 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.798 3.202 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.179 1.179 26 C -0.019 4.019 27 C -0.154 4.154 28 N -0.294 5.294 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.000 1.000 46 H 0.000 1.000 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.102 0.898 50 H 0.078 0.922 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.896 31.941 8.162 33.022 hybrid contribution -0.121 -1.104 0.088 1.114 sum 1.775 30.837 8.250 31.971 Atomic orbital electron populations 1.21775 0.92554 1.01974 1.03213 1.19672 0.96675 0.95673 0.90787 1.21767 1.00720 0.93637 1.03240 1.24631 0.94760 0.92341 0.94218 1.77879 1.21493 1.14547 1.02583 1.47943 1.39171 1.21220 1.11049 0.69890 1.24675 0.94127 0.93640 0.85717 1.20462 0.95585 0.86714 1.04700 1.21065 0.97492 0.93398 0.97147 1.21915 0.99177 0.96923 0.98009 1.21932 0.94168 0.87176 0.98593 1.48255 1.49837 1.08321 1.28093 1.21301 0.80607 0.81910 0.86142 1.90631 1.45806 1.48068 1.62517 1.21622 1.00468 0.99211 0.94348 1.18678 0.94940 0.90763 0.94984 1.21693 1.30067 0.95681 1.10637 0.90759 1.26145 0.96740 0.96310 1.01261 1.70179 1.42951 1.02574 1.41985 0.85319 0.79020 0.77441 0.78464 1.19644 1.21075 1.17933 1.21717 0.95200 0.98630 0.86399 1.21893 0.97302 0.93198 1.03012 1.70438 1.21239 1.15872 1.21843 0.92596 0.89595 0.93373 0.88475 0.93244 0.89557 0.92614 0.85650 0.88029 0.89328 0.90681 0.92005 0.89515 0.89919 0.88321 0.88344 1.00005 0.99989 0.92832 0.91587 0.89830 0.92173 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.18 71.98 0.66 -1.15 16 2 C -0.01 -0.11 3.39 -11.54 -0.04 -0.15 16 3 C -0.14 -1.67 9.18 71.98 0.66 -1.01 16 4 C 0.22 4.43 6.65 138.63 0.92 5.35 16 5 N -0.34 -6.49 12.80 -51.33 -0.66 -7.14 16 6 N -0.47 -6.34 7.45 -50.71 -0.38 -6.72 16 7 H 0.45 2.83 8.96 -213.10 -1.91 0.92 16 8 C 0.30 4.36 6.60 138.23 0.91 5.28 16 9 C -0.03 -0.31 5.32 29.85 0.16 -0.16 16 10 C -0.07 -0.81 2.14 -10.76 -0.02 -0.83 16 11 C -0.12 -2.12 5.19 30.67 0.16 -1.96 16 12 C 0.10 2.17 6.34 86.36 0.55 2.72 16 13 N -0.61 -17.19 2.97 -818.91 -2.43 -19.62 16 14 C 0.51 20.57 7.70 87.66 0.67 21.24 16 15 O -0.59 -29.64 15.40 -3.03 -0.05 -29.68 16 16 C -0.12 -4.92 3.99 29.85 0.12 -4.80 16 17 C 0.04 2.52 4.26 29.85 0.13 2.64 16 18 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 19 H 0.07 3.94 7.74 -2.91 -0.02 3.91 16 20 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 21 N -0.94 -60.17 13.29 21.45 0.28 -59.88 16 22 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 C 0.10 2.25 6.43 86.36 0.56 2.81 16 27 C -0.12 -1.58 5.36 30.67 0.16 -1.42 16 28 N -0.56 -11.60 10.72 -179.72 -1.93 -13.53 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.13 0.30 8.14 -2.38 -0.02 0.28 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 1.38 6.97 -2.39 -0.02 1.36 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.96 5.93 -2.39 -0.01 1.94 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.10 3.71 7.94 -2.39 -0.02 3.69 16 44 H 0.10 3.73 7.69 -2.39 -0.02 3.71 16 45 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 46 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 47 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 48 H 0.07 1.86 7.01 -2.39 -0.02 1.84 16 49 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 50 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -84.51 408.64 2.17 -82.35 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -1.00 Total: 10.01 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 6.29 Total: -2.66 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -5.11 Total: -106.90 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.05 Total: -29.68 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -84.51 2.17 -82.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602172298.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.821 kcal (2) G-P(sol) polarization free energy of solvation -84.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds