Wall clock time and date at job start Tue Mar 31 2020 20:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.47037 * 2 1 4 4 C 1.52992 * 109.46877 * 240.00196 * 2 1 3 5 5 C 1.50695 * 109.47368 * 120.00041 * 2 1 3 6 6 C 1.39680 * 126.06609 * 74.99667 * 5 2 1 7 7 C 1.38409 * 105.35786 * 179.97438 * 6 5 2 8 8 C 1.47153 * 126.88454 * 179.97438 * 7 6 5 9 9 O 1.21629 * 120.00225 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99963 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.46826 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.50281 * 305.06340 * 12 11 10 14 14 C 1.53047 * 109.49753 * 185.00162 * 12 11 10 15 15 C 1.53043 * 109.53907 * 178.68240 * 14 12 11 16 16 C 1.53197 * 109.31048 * 61.36745 * 15 14 12 17 17 N 1.46930 * 108.77229 * 305.36329 * 16 15 14 18 18 C 1.36942 * 120.62512 * 233.58453 * 17 16 15 19 19 H 1.08000 * 119.99822 * 151.83921 * 18 17 16 20 20 C 1.38804 * 120.00133 * 331.83769 * 18 17 16 21 21 N 1.31622 * 120.00247 * 343.07682 * 20 18 17 22 22 Si 1.86810 * 119.99877 * 163.07636 * 20 18 17 23 23 H 1.48498 * 109.46844 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47269 * 120.00142 * 22 20 18 25 25 H 1.48497 * 109.46750 * 239.99912 * 22 20 18 26 26 C 1.46921 * 118.74249 * 53.86261 * 17 16 15 27 27 N 1.36599 * 106.22981 * 0.26692 * 7 6 5 28 28 H 0.97006 * 125.19088 * 179.73501 * 27 7 6 29 29 N 1.28442 * 109.62157 * 359.55175 * 27 7 6 30 30 H 1.08996 * 109.46874 * 299.99734 * 1 2 3 31 31 H 1.08994 * 109.46801 * 59.99678 * 1 2 3 32 32 H 1.08994 * 109.46490 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47039 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47055 * 300.00339 * 3 2 1 35 35 H 1.09003 * 109.46858 * 60.00098 * 3 2 1 36 36 H 1.08999 * 109.47818 * 299.99878 * 4 2 1 37 37 H 1.09005 * 109.47578 * 60.00034 * 4 2 1 38 38 H 1.09006 * 109.47296 * 179.97438 * 4 2 1 39 39 H 1.07997 * 127.32055 * 359.97438 * 6 5 2 40 40 H 0.96994 * 120.00132 * 0.02562 * 10 8 7 41 41 H 1.08995 * 109.46773 * 60.00342 * 11 10 8 42 42 H 1.08995 * 109.46727 * 300.00402 * 11 10 8 43 43 H 1.08994 * 109.45861 * 58.66345 * 14 12 11 44 44 H 1.08997 * 109.44594 * 298.69995 * 14 12 11 45 45 H 1.08991 * 109.49664 * 301.41685 * 15 14 12 46 46 H 1.08996 * 109.51804 * 181.33201 * 15 14 12 47 47 H 1.08994 * 109.58410 * 185.57859 * 16 15 14 48 48 H 1.08997 * 109.70673 * 65.21813 * 16 15 14 49 49 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 50 50 H 1.09006 * 109.58770 * 65.92424 * 26 17 16 51 51 H 1.08999 * 109.58848 * 186.34837 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0325 -0.7104 1.2304 6 6 2.0311 -2.0912 1.4409 7 6 2.5827 -2.2710 2.6975 8 6 2.8041 -3.5504 3.3900 9 8 2.4901 -4.5953 2.8524 10 7 3.3558 -3.5644 4.6197 11 6 3.5767 -4.8383 5.3089 12 6 4.2092 -4.5748 6.6769 13 1 5.1171 -3.9851 6.5505 14 6 4.5547 -5.9077 7.3451 15 6 5.2174 -5.6447 8.6993 16 6 4.2386 -4.8896 9.6042 17 7 3.7891 -3.6771 8.9067 18 6 3.8989 -2.4487 9.5019 19 1 4.0123 -1.5627 8.8948 20 6 3.8644 -2.3422 10.8854 21 7 3.4016 -3.3383 11.6108 22 14 4.4747 -0.7853 11.7179 23 1 4.9413 0.1767 10.6873 24 1 3.3692 -0.1761 12.5000 25 1 5.5995 -1.1191 12.6281 26 6 3.2139 -3.8082 7.5611 27 7 2.8742 -1.0225 3.1687 28 1 3.2700 -0.8295 4.0331 29 7 2.5479 -0.1432 2.2911 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0276 -0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1301 -0.7208 -1.2495 39 1 1.6752 -2.8560 0.7665 40 1 3.6065 -2.7313 5.0483 41 1 4.2436 -5.4623 4.7140 42 1 2.6233 -5.3494 5.4421 43 1 5.2401 -6.4664 6.7079 44 1 3.6431 -6.4865 7.4931 45 1 6.1156 -5.0446 8.5543 46 1 5.4848 -6.5935 9.1643 47 1 4.7383 -4.6131 10.5325 48 1 3.3798 -5.5231 9.8260 49 1 3.3771 -3.2637 12.5776 50 1 2.2735 -4.3566 7.6175 51 1 3.0372 -2.8181 7.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610246418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:31 Heat of formation + Delta-G solvation = 31.135923 kcal Electronic energy + Delta-G solvation = -28930.594990 eV Core-core repulsion = 25059.043167 eV Total energy + Delta-G solvation = -3871.551823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.78257 -39.59336 -37.84203 -37.16760 -35.01052 -33.14998 -31.32961 -31.19735 -30.52498 -30.07658 -27.53295 -27.47556 -25.83456 -25.34458 -23.37474 -22.71633 -22.10682 -21.05138 -20.76706 -19.52796 -18.82816 -18.59345 -16.79656 -16.03478 -15.97710 -15.93411 -15.19507 -15.14596 -14.87877 -14.31500 -14.23969 -14.08960 -13.83521 -13.69656 -13.59271 -13.49454 -12.88703 -12.54312 -12.44103 -12.39227 -12.33625 -12.25961 -11.88555 -11.58317 -11.39507 -11.32242 -11.24724 -11.09612 -10.82113 -10.73512 -10.58386 -10.32603 -10.27988 -10.19527 -10.00026 -9.67823 -9.50942 -9.38925 -9.31741 -9.06438 -8.54816 -6.75803 -5.87192 -3.31131 1.10707 2.36867 2.60350 2.96532 3.11652 3.30444 3.38537 3.40002 4.14200 4.40055 4.46590 4.58197 4.75826 4.90420 4.97834 5.08146 5.19563 5.30322 5.33716 5.36552 5.38771 5.41309 5.50576 5.53171 5.56369 5.67023 5.68182 5.73603 5.81293 5.83442 5.88326 5.90801 6.07338 6.11688 6.13080 6.18977 6.26684 6.28640 6.31363 6.49058 6.61304 6.67078 6.74707 6.77327 6.85808 7.31111 7.32591 7.60043 7.70213 7.80006 7.99266 8.36035 9.12132 9.75387 10.32209 11.20854 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.002512 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.277126 B =11142.860724 C =12748.296671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.017 3.983 3 C -0.135 4.135 4 C -0.139 4.139 5 C 0.036 3.964 6 C -0.149 4.149 7 C -0.034 4.034 8 C 0.588 3.412 9 O -0.526 6.526 10 N -0.719 5.719 11 C 0.127 3.873 12 C -0.119 4.119 13 H 0.074 0.926 14 C -0.099 4.099 15 C -0.141 4.141 16 C 0.168 3.832 17 N -0.591 5.591 18 C -0.256 4.256 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.900 5.900 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.288 1.288 26 C 0.154 3.846 27 N -0.378 5.378 28 H 0.446 0.554 29 N -0.263 5.263 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.162 0.838 40 H 0.398 0.602 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.086 0.914 48 H 0.018 0.982 49 H 0.254 0.746 50 H 0.020 0.980 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 3.168 -21.444 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 C -0.193 4.193 4 C -0.197 4.197 5 C -0.122 4.122 6 C -0.178 4.178 7 C -0.163 4.163 8 C 0.373 3.627 9 O -0.400 6.400 10 N -0.370 5.370 11 C 0.004 3.996 12 C -0.140 4.140 13 H 0.092 0.908 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.386 4.386 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.215 1.215 26 C 0.027 3.973 27 N -0.094 5.094 28 H 0.291 0.709 29 N -0.096 5.096 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.180 0.820 40 H 0.232 0.768 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.036 0.964 49 H 0.064 0.936 50 H 0.038 0.962 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.083 3.390 -21.153 21.450 hybrid contribution 0.464 0.442 1.079 1.255 sum -0.619 3.832 -20.074 20.446 Atomic orbital electron populations 1.21877 0.93279 1.02378 1.02098 1.18904 0.95428 0.94820 0.89320 1.21775 1.01294 0.94281 1.01938 1.21885 1.01380 1.00508 0.95935 1.21908 1.03107 0.91612 0.95566 1.21960 1.04006 0.96478 0.95398 1.21797 1.10146 0.86577 0.97755 1.16983 0.77967 0.86728 0.81056 1.90833 1.51260 1.31796 1.66156 1.45982 1.62935 1.11072 1.17039 1.21559 1.01193 0.84117 0.92732 1.22060 1.00358 0.98883 0.92650 0.90809 1.21338 1.00130 0.95341 0.96948 1.22165 1.00113 0.99692 0.96088 1.20805 0.93982 0.86250 0.94686 1.44054 1.69836 1.04019 1.13448 1.19165 1.44606 0.85281 0.89521 0.91789 1.25063 0.99750 0.97493 0.97208 1.70042 1.47150 1.32094 1.05093 0.86245 0.78319 0.82826 0.79481 1.20276 1.21674 1.21490 1.20982 0.92824 0.96718 0.86799 1.43672 1.46336 1.02880 1.16478 0.70890 1.73091 1.16548 1.19901 1.00051 0.92400 0.91920 0.92177 0.92492 0.92462 0.91944 0.92057 0.91895 0.92393 0.82042 0.76794 0.91481 0.91081 0.93332 0.92366 0.92740 0.93084 0.89553 0.96366 0.93585 0.96194 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.46 37.16 0.31 -0.73 16 2 C 0.02 0.14 0.96 -155.66 -0.15 -0.01 16 3 C -0.14 -1.09 8.04 37.16 0.30 -0.79 16 4 C -0.14 -0.98 8.20 37.15 0.30 -0.68 16 5 C 0.04 0.40 5.65 -82.47 -0.47 -0.07 16 6 C -0.15 -1.73 10.12 -38.98 -0.39 -2.13 16 7 C -0.03 -0.42 7.16 -82.06 -0.59 -1.00 16 8 C 0.59 8.05 7.80 -12.64 -0.10 7.95 16 9 O -0.53 -8.81 16.92 5.25 0.09 -8.72 16 10 N -0.72 -8.90 5.33 -61.47 -0.33 -9.23 16 11 C 0.13 1.72 5.07 -4.04 -0.02 1.70 16 12 C -0.12 -1.82 2.39 -90.27 -0.22 -2.04 16 13 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.10 -1.55 5.17 -26.68 -0.14 -1.68 16 15 C -0.14 -2.55 6.08 -26.61 -0.16 -2.71 16 16 C 0.17 3.86 5.30 -3.71 -0.02 3.84 16 17 N -0.59 -13.99 2.99 -172.05 -0.51 -14.51 16 18 C -0.26 -6.70 9.58 -15.06 -0.14 -6.84 16 19 H 0.06 1.62 7.88 -52.49 -0.41 1.21 16 20 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 21 N -0.90 -25.50 11.20 55.49 0.62 -24.88 16 22 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.15 2.93 5.63 -3.49 -0.02 2.91 16 27 N -0.38 -4.05 6.85 33.48 0.23 -3.82 16 28 H 0.45 3.70 8.22 -190.45 -1.57 2.13 16 29 N -0.26 -3.08 11.48 33.64 0.39 -2.69 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.06 0.42 7.60 -51.93 -0.39 0.02 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.16 1.71 7.79 -52.49 -0.41 1.30 16 40 H 0.40 4.25 6.90 -40.82 -0.28 3.97 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 2.24 6.06 -51.93 -0.31 1.92 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.05 0.85 7.16 -51.93 -0.37 0.48 16 LS Contribution 404.47 15.07 6.10 6.10 Total: -1.00 -31.35 404.47 -10.10 -41.45 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -10.07 Total: 2.54 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.58 Total: -2.25 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.40 Total: -55.12 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.35 -10.10 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610246418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.589 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds