Wall clock time and date at job start Tue Mar 31 2020 20:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.47037 * 2 1 4 4 C 1.52992 * 109.46877 * 240.00196 * 2 1 3 5 5 C 1.50695 * 109.47368 * 120.00041 * 2 1 3 6 6 C 1.39680 * 126.06609 * 74.99667 * 5 2 1 7 7 C 1.38409 * 105.35786 * 179.97438 * 6 5 2 8 8 C 1.47153 * 126.88454 * 179.97438 * 7 6 5 9 9 O 1.21629 * 120.00225 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99963 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.46826 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.50281 * 305.06340 * 12 11 10 14 14 C 1.53047 * 109.49753 * 185.00162 * 12 11 10 15 15 C 1.53043 * 109.53907 * 178.68240 * 14 12 11 16 16 C 1.53197 * 109.31048 * 61.36745 * 15 14 12 17 17 N 1.46930 * 108.77229 * 305.36329 * 16 15 14 18 18 C 1.36942 * 120.62512 * 233.58453 * 17 16 15 19 19 H 1.08000 * 119.99822 * 151.83921 * 18 17 16 20 20 C 1.38804 * 120.00133 * 331.83769 * 18 17 16 21 21 N 1.31622 * 120.00247 * 343.07682 * 20 18 17 22 22 Si 1.86810 * 119.99877 * 163.07636 * 20 18 17 23 23 H 1.48498 * 109.46844 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47269 * 120.00142 * 22 20 18 25 25 H 1.48497 * 109.46750 * 239.99912 * 22 20 18 26 26 C 1.46921 * 118.74249 * 53.86261 * 17 16 15 27 27 N 1.36599 * 106.22981 * 0.26692 * 7 6 5 28 28 H 0.97006 * 125.19088 * 179.73501 * 27 7 6 29 29 N 1.28442 * 109.62157 * 359.55175 * 27 7 6 30 30 H 1.08996 * 109.46874 * 299.99734 * 1 2 3 31 31 H 1.08994 * 109.46801 * 59.99678 * 1 2 3 32 32 H 1.08994 * 109.46490 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47039 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47055 * 300.00339 * 3 2 1 35 35 H 1.09003 * 109.46858 * 60.00098 * 3 2 1 36 36 H 1.08999 * 109.47818 * 299.99878 * 4 2 1 37 37 H 1.09005 * 109.47578 * 60.00034 * 4 2 1 38 38 H 1.09006 * 109.47296 * 179.97438 * 4 2 1 39 39 H 1.07997 * 127.32055 * 359.97438 * 6 5 2 40 40 H 0.96994 * 120.00132 * 0.02562 * 10 8 7 41 41 H 1.08995 * 109.46773 * 60.00342 * 11 10 8 42 42 H 1.08995 * 109.46727 * 300.00402 * 11 10 8 43 43 H 1.08994 * 109.45861 * 58.66345 * 14 12 11 44 44 H 1.08997 * 109.44594 * 298.69995 * 14 12 11 45 45 H 1.08991 * 109.49664 * 301.41685 * 15 14 12 46 46 H 1.08996 * 109.51804 * 181.33201 * 15 14 12 47 47 H 1.08994 * 109.58410 * 185.57859 * 16 15 14 48 48 H 1.08997 * 109.70673 * 65.21813 * 16 15 14 49 49 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 50 50 H 1.09006 * 109.58770 * 65.92424 * 26 17 16 51 51 H 1.08999 * 109.58848 * 186.34837 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0325 -0.7104 1.2304 6 6 2.0311 -2.0912 1.4409 7 6 2.5827 -2.2710 2.6975 8 6 2.8041 -3.5504 3.3900 9 8 2.4901 -4.5953 2.8524 10 7 3.3558 -3.5644 4.6197 11 6 3.5767 -4.8383 5.3089 12 6 4.2092 -4.5748 6.6769 13 1 5.1171 -3.9851 6.5505 14 6 4.5547 -5.9077 7.3451 15 6 5.2174 -5.6447 8.6993 16 6 4.2386 -4.8896 9.6042 17 7 3.7891 -3.6771 8.9067 18 6 3.8989 -2.4487 9.5019 19 1 4.0123 -1.5627 8.8948 20 6 3.8644 -2.3422 10.8854 21 7 3.4016 -3.3383 11.6108 22 14 4.4747 -0.7853 11.7179 23 1 4.9413 0.1767 10.6873 24 1 3.3692 -0.1761 12.5000 25 1 5.5995 -1.1191 12.6281 26 6 3.2139 -3.8082 7.5611 27 7 2.8742 -1.0225 3.1687 28 1 3.2700 -0.8295 4.0331 29 7 2.5479 -0.1432 2.2911 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0276 -0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1301 -0.7208 -1.2495 39 1 1.6752 -2.8560 0.7665 40 1 3.6065 -2.7313 5.0483 41 1 4.2436 -5.4623 4.7140 42 1 2.6233 -5.3494 5.4421 43 1 5.2401 -6.4664 6.7079 44 1 3.6431 -6.4865 7.4931 45 1 6.1156 -5.0446 8.5543 46 1 5.4848 -6.5935 9.1643 47 1 4.7383 -4.6131 10.5325 48 1 3.3798 -5.5231 9.8260 49 1 3.3771 -3.2637 12.5776 50 1 2.2735 -4.3566 7.6175 51 1 3.0372 -2.8181 7.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610246418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:29 Heat of formation + Delta-G solvation = 11.994945 kcal Electronic energy + Delta-G solvation = -28931.425005 eV Core-core repulsion = 25059.043167 eV Total energy + Delta-G solvation = -3872.381838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.65940 -40.72935 -39.31792 -37.83368 -36.38013 -34.76470 -32.53003 -32.29830 -32.06909 -31.29322 -28.17060 -28.04941 -27.31614 -26.97586 -24.40500 -23.81104 -23.53518 -22.41603 -21.75411 -20.89532 -19.93849 -19.38185 -18.65481 -17.11880 -17.02346 -16.95854 -16.73605 -16.26236 -15.94442 -15.70556 -15.36530 -15.05795 -15.02441 -14.81761 -14.67211 -14.53335 -14.39990 -14.02793 -13.78081 -13.62305 -13.07440 -13.03132 -12.94716 -12.92096 -12.56000 -12.48650 -12.33690 -12.26897 -12.00142 -11.97447 -11.86967 -11.84962 -11.62335 -11.54810 -11.36829 -11.17403 -11.08875 -10.56316 -10.41523 -10.15195 -10.06514 -8.69309 -7.88731 -5.35007 0.14261 1.44396 1.46996 1.50926 1.56314 1.75128 1.95613 2.09149 2.48905 3.26411 3.36390 3.54351 3.62735 3.82382 3.95450 3.98332 4.03302 4.14514 4.21937 4.34958 4.40118 4.46063 4.54118 4.60162 4.68850 4.73964 4.85160 4.86347 4.87473 4.88186 4.97311 4.97935 5.09168 5.09735 5.09987 5.14235 5.17511 5.27726 5.29009 5.33446 5.42006 5.49091 5.50000 5.51320 5.55785 5.65590 5.77896 5.93256 6.30807 6.37763 6.88883 6.98585 7.13207 7.84529 8.36434 9.17380 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.002512 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.277126 B =11142.860724 C =12748.296671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.014 3.986 3 C -0.132 4.132 4 C -0.137 4.137 5 C 0.035 3.965 6 C -0.155 4.155 7 C -0.045 4.045 8 C 0.593 3.407 9 O -0.559 6.559 10 N -0.712 5.712 11 C 0.137 3.863 12 C -0.101 4.101 13 H 0.079 0.921 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.609 5.609 18 C -0.259 4.259 19 H 0.072 0.928 20 C -0.053 4.053 21 N -0.936 5.936 22 Si 0.964 3.036 23 H -0.263 1.263 24 H -0.296 1.296 25 H -0.292 1.292 26 C 0.151 3.849 27 N -0.370 5.370 28 H 0.455 0.545 29 N -0.276 5.276 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.169 0.831 40 H 0.407 0.593 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.050 0.950 48 H -0.008 1.008 49 H 0.249 0.751 50 H 0.007 0.993 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 3.833 -23.791 24.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.012 3.988 3 C -0.190 4.190 4 C -0.194 4.194 5 C -0.123 4.123 6 C -0.184 4.184 7 C -0.174 4.174 8 C 0.379 3.621 9 O -0.436 6.436 10 N -0.363 5.363 11 C 0.013 3.987 12 C -0.121 4.121 13 H 0.098 0.902 14 C -0.135 4.135 15 C -0.169 4.169 16 C 0.046 3.954 17 N -0.332 5.332 18 C -0.389 4.389 19 H 0.089 0.911 20 C -0.248 4.248 21 N -0.582 5.582 22 Si 0.793 3.207 23 H -0.187 1.187 24 H -0.223 1.223 25 H -0.219 1.219 26 C 0.025 3.975 27 N -0.087 5.087 28 H 0.302 0.698 29 N -0.109 5.109 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.186 0.814 40 H 0.243 0.757 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.010 0.990 49 H 0.058 0.942 50 H 0.025 0.975 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.374 4.078 -23.516 23.870 hybrid contribution 0.198 0.245 1.781 1.809 sum -0.176 4.323 -21.735 22.162 Atomic orbital electron populations 1.21867 0.92551 1.02459 1.02516 1.19066 0.95975 0.94917 0.88824 1.21749 1.00760 0.94122 1.02328 1.21876 1.00970 1.00691 0.95905 1.22352 1.02411 0.91512 0.96061 1.22178 1.03773 0.97079 0.95391 1.21641 1.11144 0.86453 0.98116 1.17076 0.77319 0.86736 0.81014 1.90815 1.52800 1.33000 1.66986 1.45884 1.62430 1.11255 1.16687 1.21397 1.00938 0.84602 0.91738 1.21813 0.99322 0.98352 0.92627 0.90249 1.21339 1.00646 0.95659 0.95889 1.21990 0.98623 0.99672 0.96588 1.20640 0.93811 0.86264 0.94674 1.44325 1.70537 1.03485 1.14871 1.19559 1.42999 0.86524 0.89861 0.91053 1.25811 1.00668 1.00299 0.98019 1.70199 1.49099 1.34106 1.04812 0.85256 0.77215 0.79809 0.78455 1.18696 1.22299 1.21914 1.21134 0.93180 0.97801 0.85376 1.43682 1.46037 1.02253 1.16776 0.69841 1.73094 1.17012 1.20261 1.00550 0.93553 0.89933 0.92275 0.93262 0.90497 0.93122 0.91930 0.90021 0.93024 0.81378 0.75714 0.90122 0.91813 0.89948 0.92551 0.92773 0.91295 0.93144 0.98956 0.94225 0.97532 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.46 71.99 0.61 -1.21 16 2 C 0.01 0.21 0.96 -52.93 -0.05 0.16 16 3 C -0.13 -1.91 8.04 71.98 0.58 -1.33 16 4 C -0.14 -1.65 8.20 71.98 0.59 -1.06 16 5 C 0.03 0.71 5.65 43.05 0.24 0.96 16 6 C -0.15 -3.43 10.12 22.66 0.23 -3.20 16 7 C -0.04 -1.04 7.16 40.78 0.29 -0.75 16 8 C 0.59 15.47 7.80 86.58 0.68 16.14 16 9 O -0.56 -18.15 16.92 -4.12 -0.07 -18.22 16 10 N -0.71 -16.33 5.33 -466.64 -2.49 -18.81 16 11 C 0.14 3.38 5.07 86.38 0.44 3.82 16 12 C -0.10 -2.87 2.39 -10.57 -0.03 -2.89 16 13 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.10 -2.78 5.17 30.62 0.16 -2.62 16 15 C -0.13 -4.51 6.08 30.67 0.19 -4.32 16 16 C 0.17 8.02 5.30 86.36 0.46 8.48 16 17 N -0.61 -28.94 2.99 -698.26 -2.09 -31.03 16 18 C -0.26 -13.57 9.58 84.03 0.81 -12.77 16 19 H 0.07 3.56 7.88 -2.91 -0.02 3.53 16 20 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 21 N -0.94 -54.75 11.20 21.65 0.24 -54.51 16 22 Si 0.96 43.74 29.59 68.60 2.03 45.77 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 26 C 0.15 5.63 5.63 86.51 0.49 6.12 16 27 N -0.37 -7.51 6.85 -48.00 -0.33 -7.84 16 28 H 0.45 6.95 8.22 -220.00 -1.81 5.14 16 29 N -0.28 -6.17 11.48 -47.49 -0.55 -6.72 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.79 8.14 -2.38 -0.02 0.78 16 35 H 0.05 0.85 8.09 -2.39 -0.02 0.83 16 36 H 0.06 0.74 7.60 -2.39 -0.02 0.72 16 37 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.17 3.39 7.79 -2.91 -0.02 3.37 16 40 H 0.41 7.90 6.90 -92.71 -0.64 7.26 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.05 2.70 6.06 -2.39 -0.01 2.69 16 48 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 49 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 50 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 51 H 0.06 1.97 7.16 -2.39 -0.02 1.95 16 Total: -1.00 -68.49 404.47 1.32 -67.17 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: -1.52 Total: 21.12 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 6.09 Total: 3.07 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -5.20 Total: -118.91 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.07 Total: -18.22 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.49 1.32 -67.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610246418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.165 kcal (2) G-P(sol) polarization free energy of solvation -68.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds