Wall clock time and date at job start Tue Mar 31 2020 20:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47297 * 2 1 4 4 C 1.50701 * 109.46967 * 120.00451 * 2 1 3 5 5 N 1.30504 * 125.64637 * 300.17077 * 4 2 1 6 6 C 1.34129 * 109.25046 * 180.29582 * 5 4 2 7 7 C 1.34669 * 108.02286 * 359.72620 * 6 5 4 8 8 N 1.35044 * 125.65397 * 120.00369 * 4 2 1 9 9 C 1.46501 * 126.39159 * 359.96500 * 8 4 2 10 10 C 1.50703 * 109.46711 * 84.72203 * 9 8 4 11 11 O 1.21280 * 120.00225 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99873 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99960 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.46970 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.52558 * 304.91361 * 14 13 12 16 16 C 1.53350 * 109.68363 * 184.74873 * 14 13 12 17 17 C 1.53044 * 109.60893 * 178.74575 * 16 14 13 18 18 C 1.53198 * 109.30949 * 61.37664 * 17 16 14 19 19 N 1.46925 * 108.77358 * 305.36214 * 18 17 16 20 20 C 1.36931 * 120.62943 * 233.63033 * 19 18 17 21 21 H 1.08005 * 119.99889 * 151.81888 * 20 19 18 22 22 C 1.38813 * 120.00220 * 331.81086 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.08678 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.08567 * 22 20 19 25 25 H 1.48496 * 109.47191 * 90.00149 * 24 22 20 26 26 H 1.48501 * 109.46981 * 210.00196 * 24 22 20 27 27 H 1.48500 * 109.46794 * 329.99854 * 24 22 20 28 28 C 1.46925 * 118.73856 * 53.61465 * 19 18 17 29 29 H 1.08994 * 109.47168 * 299.99662 * 1 2 3 30 30 H 1.08996 * 109.46788 * 59.99835 * 1 2 3 31 31 H 1.09000 * 109.46952 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46715 * 239.99708 * 2 1 3 33 33 H 1.09007 * 109.47049 * 59.99881 * 3 2 1 34 34 H 1.08993 * 109.47258 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47181 * 300.00481 * 3 2 1 36 36 H 1.08007 * 125.98690 * 179.72417 * 6 5 4 37 37 H 1.08001 * 126.58724 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47884 * 324.72250 * 9 8 4 39 39 H 1.09005 * 109.47173 * 204.71658 * 9 8 4 40 40 H 0.97001 * 119.99811 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47400 * 59.99596 * 13 12 10 42 42 H 1.09005 * 109.46741 * 299.99854 * 13 12 10 43 43 H 1.09001 * 109.42012 * 58.71078 * 16 14 13 44 44 H 1.08997 * 109.42600 * 298.78787 * 16 14 13 45 45 H 1.08996 * 109.49900 * 301.42445 * 17 16 14 46 46 H 1.09005 * 109.49524 * 181.32587 * 17 16 14 47 47 H 1.08998 * 109.58305 * 185.58021 * 18 17 16 48 48 H 1.09000 * 109.70493 * 65.22199 * 18 17 16 49 49 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.58983 * 66.17256 * 28 19 18 51 51 H 1.08993 * 109.58892 * 186.45693 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7833 -0.3640 2.4637 6 6 2.3969 -1.2186 3.2957 7 6 3.0460 -2.1328 2.5497 8 7 2.8121 -1.8131 1.2395 9 6 3.3180 -2.5296 0.0661 10 6 4.5862 -1.8729 -0.4151 11 8 5.0239 -0.9017 0.1646 12 7 5.2339 -2.3648 -1.4899 13 6 6.4670 -1.7268 -1.9574 14 6 6.9960 -2.4757 -3.1821 15 1 7.1201 -3.5308 -2.9384 16 6 8.3474 -1.8862 -3.6041 17 6 8.8898 -2.6568 -4.8100 18 6 7.9141 -2.5146 -5.9826 19 7 6.5799 -2.9443 -5.5423 20 6 5.8885 -3.8981 -6.2403 21 1 5.1759 -4.5298 -5.7307 22 6 6.1033 -4.0531 -7.6030 23 7 6.6984 -3.0997 -8.2880 24 14 5.5478 -5.6148 -8.4644 25 1 4.1572 -5.4413 -8.9555 26 1 6.4473 -5.8934 -9.6127 27 1 5.5976 -6.7511 -7.5097 28 6 6.0018 -2.3314 -4.3386 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3744 -1.1802 4.3749 37 1 3.6378 -2.9590 2.9150 38 1 2.5708 -2.5016 -0.7269 39 1 3.5246 -3.5658 0.3342 40 1 4.8840 -3.1418 -1.9533 41 1 7.2140 -1.7548 -1.1641 42 1 6.2607 -0.6906 -2.2257 43 1 9.0517 -1.9653 -2.7760 44 1 8.2178 -0.8376 -3.8716 45 1 8.9961 -3.7102 -4.5509 46 1 9.8611 -2.2516 -5.0937 47 1 8.2448 -3.1410 -6.8110 48 1 7.8753 -1.4739 -6.3042 49 1 6.8489 -3.2082 -9.2400 50 1 5.8075 -1.2750 -4.5238 51 1 5.0694 -2.8352 -4.0839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896629416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:22 Heat of formation + Delta-G solvation = 30.543593 kcal Electronic energy + Delta-G solvation = -29340.187551 eV Core-core repulsion = 25468.610044 eV Total energy + Delta-G solvation = -3871.577508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.32286 -39.78339 -37.89336 -35.48427 -35.02231 -34.14673 -33.10218 -30.69439 -30.51029 -29.00914 -28.08880 -27.26378 -25.45099 -25.14164 -22.99747 -22.25241 -21.59558 -21.10883 -20.78418 -19.38197 -19.07015 -17.65177 -17.45955 -16.72195 -15.95094 -15.68211 -15.13163 -15.00362 -14.85700 -14.45003 -14.39595 -13.92652 -13.72630 -13.67132 -13.56493 -13.45723 -12.99530 -12.94091 -12.82138 -12.43510 -12.27348 -12.25117 -12.19815 -11.64006 -11.39713 -11.32019 -11.10357 -11.09878 -10.78920 -10.60753 -10.50283 -10.32632 -10.26525 -10.03668 -10.01416 -9.76170 -9.51796 -9.51341 -9.14816 -8.55061 -8.42727 -6.76339 -5.87716 -3.31250 1.84079 2.33242 2.44207 3.07896 3.15075 3.29923 3.37714 3.38780 4.20264 4.33310 4.38973 4.42080 4.52693 4.64727 4.87822 4.97542 4.99221 5.10373 5.19026 5.32349 5.35492 5.36186 5.52106 5.53371 5.53927 5.68781 5.72010 5.75126 5.81001 5.82579 5.88451 6.05166 6.11675 6.16997 6.19513 6.22705 6.26969 6.31361 6.48592 6.60147 6.65993 6.67277 6.76254 6.85122 6.99064 7.30963 7.32187 7.59144 7.69418 7.97539 8.03566 8.35561 9.11657 9.75136 10.31929 11.20567 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.002535 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.500845 B =11042.728630 C =11775.311566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 C -0.139 4.139 4 C 0.230 3.770 5 N -0.488 5.488 6 C -0.028 4.028 7 C -0.054 4.054 8 N -0.441 5.441 9 C 0.081 3.919 10 C 0.493 3.507 11 O -0.524 6.524 12 N -0.718 5.718 13 C 0.129 3.871 14 C -0.118 4.118 15 H 0.073 0.927 16 C -0.099 4.099 17 C -0.141 4.141 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.257 4.257 21 H 0.064 0.936 22 C 0.004 3.996 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.154 3.846 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.405 0.595 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.086 0.914 48 H 0.018 0.982 49 H 0.255 0.745 50 H 0.018 0.982 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.220 1.198 16.766 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.197 4.197 4 C -0.032 4.032 5 N -0.206 5.206 6 C -0.176 4.176 7 C -0.185 4.185 8 N -0.123 5.123 9 C -0.046 4.046 10 C 0.276 3.724 11 O -0.399 6.399 12 N -0.370 5.370 13 C 0.005 3.995 14 C -0.139 4.139 15 H 0.092 0.908 16 C -0.138 4.138 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.313 5.313 20 C -0.386 4.386 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.544 5.544 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.028 3.972 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.185 0.815 37 H 0.189 0.811 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.240 0.760 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.036 0.964 49 H 0.065 0.935 50 H 0.036 0.964 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.286 2.487 17.127 18.413 hybrid contribution 0.333 -2.049 -0.953 2.284 sum -5.953 0.438 16.174 17.240 Atomic orbital electron populations 1.21790 0.93056 1.02055 1.02820 1.19553 0.96457 0.96202 0.90710 1.21754 1.01709 0.93806 1.02410 1.23178 0.96253 0.88125 0.95663 1.70178 1.24550 1.26907 0.98937 1.22210 1.01331 0.94551 0.99470 1.22605 1.08127 1.05213 0.82604 1.44846 1.38357 1.23297 1.05821 1.21712 0.96205 0.97565 0.89114 1.20636 0.85702 0.84957 0.81102 1.90782 1.66962 1.26080 1.56089 1.46019 1.27056 1.33686 1.30248 1.21491 0.84617 0.97186 0.96184 1.22021 0.97715 0.99577 0.94573 0.90825 1.21391 0.94886 0.99620 0.97860 1.22167 0.99014 0.99375 0.97505 1.20801 0.83085 0.98197 0.93629 1.44020 1.14761 1.45221 1.27324 1.19117 1.21010 1.08874 0.89619 0.91812 1.25054 1.00500 0.97742 0.96194 1.70031 1.46368 1.30933 1.07090 0.86324 0.78065 0.83320 0.79193 1.21352 1.21513 1.20491 1.20881 0.93464 0.96022 0.86881 0.91344 0.91727 0.92839 0.90477 0.91539 0.92185 0.91908 0.81467 0.81147 0.85973 0.85883 0.76008 0.91886 0.91396 0.93456 0.92444 0.92739 0.93108 0.89565 0.96386 0.93540 0.96375 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 2 C -0.01 -0.09 3.25 -91.77 -0.30 -0.39 16 3 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 4 C 0.23 2.91 6.39 -155.41 -0.99 1.92 16 5 N -0.49 -6.81 11.25 -10.81 -0.12 -6.93 16 6 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 7 C -0.05 -0.58 11.58 -16.57 -0.19 -0.77 16 8 N -0.44 -4.96 2.24 -115.18 -0.26 -5.22 16 9 C 0.08 0.69 6.16 -5.19 -0.03 0.66 16 10 C 0.49 5.79 7.90 -10.98 -0.09 5.70 16 11 O -0.52 -8.46 16.41 5.56 0.09 -8.37 16 12 N -0.72 -7.88 5.33 -60.29 -0.32 -8.20 16 13 C 0.13 1.68 5.08 -4.04 -0.02 1.66 16 14 C -0.12 -1.76 2.39 -90.34 -0.22 -1.98 16 15 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.10 -1.53 5.19 -26.53 -0.14 -1.67 16 17 C -0.14 -2.53 6.08 -26.61 -0.16 -2.69 16 18 C 0.17 3.82 5.30 -3.71 -0.02 3.80 16 19 N -0.59 -13.78 2.99 -172.32 -0.52 -14.29 16 20 C -0.26 -6.61 9.58 -15.06 -0.14 -6.76 16 21 H 0.06 1.58 7.89 -52.48 -0.41 1.17 16 22 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 23 N -0.90 -25.25 11.20 55.49 0.62 -24.63 16 24 Si 0.90 20.70 29.59 -169.99 -5.03 15.67 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 C 0.15 2.87 5.59 -3.71 -0.02 2.84 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.76 6.85 -51.93 -0.36 0.40 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.17 1.56 8.06 -52.48 -0.42 1.13 16 37 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.12 0.78 7.30 -51.93 -0.38 0.40 16 39 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.40 3.70 7.70 -40.82 -0.31 3.39 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 2.21 6.06 -51.93 -0.31 1.90 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 50 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.05 0.85 7.13 -51.93 -0.37 0.48 16 LS Contribution 407.59 15.07 6.14 6.14 Total: -1.00 -33.26 407.59 -10.22 -43.48 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -8.89 Total: 2.66 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.94 Total: -0.31 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.60 Total: -59.27 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.26 -10.22 -43.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896629416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.023 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds