Wall clock time and date at job start Tue Mar 31 2020 20:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47297 * 2 1 4 4 C 1.50701 * 109.46967 * 120.00451 * 2 1 3 5 5 N 1.30504 * 125.64637 * 300.17077 * 4 2 1 6 6 C 1.34129 * 109.25046 * 180.29582 * 5 4 2 7 7 C 1.34669 * 108.02286 * 359.72620 * 6 5 4 8 8 N 1.35044 * 125.65397 * 120.00369 * 4 2 1 9 9 C 1.46501 * 126.39159 * 359.96500 * 8 4 2 10 10 C 1.50703 * 109.46711 * 84.72203 * 9 8 4 11 11 O 1.21280 * 120.00225 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99873 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99960 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.46970 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.52558 * 304.91361 * 14 13 12 16 16 C 1.53350 * 109.68363 * 184.74873 * 14 13 12 17 17 C 1.53044 * 109.60893 * 178.74575 * 16 14 13 18 18 C 1.53198 * 109.30949 * 61.37664 * 17 16 14 19 19 N 1.46925 * 108.77358 * 305.36214 * 18 17 16 20 20 C 1.36931 * 120.62943 * 233.63033 * 19 18 17 21 21 H 1.08005 * 119.99889 * 151.81888 * 20 19 18 22 22 C 1.38813 * 120.00220 * 331.81086 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.08678 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.08567 * 22 20 19 25 25 H 1.48496 * 109.47191 * 90.00149 * 24 22 20 26 26 H 1.48501 * 109.46981 * 210.00196 * 24 22 20 27 27 H 1.48500 * 109.46794 * 329.99854 * 24 22 20 28 28 C 1.46925 * 118.73856 * 53.61465 * 19 18 17 29 29 H 1.08994 * 109.47168 * 299.99662 * 1 2 3 30 30 H 1.08996 * 109.46788 * 59.99835 * 1 2 3 31 31 H 1.09000 * 109.46952 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46715 * 239.99708 * 2 1 3 33 33 H 1.09007 * 109.47049 * 59.99881 * 3 2 1 34 34 H 1.08993 * 109.47258 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47181 * 300.00481 * 3 2 1 36 36 H 1.08007 * 125.98690 * 179.72417 * 6 5 4 37 37 H 1.08001 * 126.58724 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47884 * 324.72250 * 9 8 4 39 39 H 1.09005 * 109.47173 * 204.71658 * 9 8 4 40 40 H 0.97001 * 119.99811 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47400 * 59.99596 * 13 12 10 42 42 H 1.09005 * 109.46741 * 299.99854 * 13 12 10 43 43 H 1.09001 * 109.42012 * 58.71078 * 16 14 13 44 44 H 1.08997 * 109.42600 * 298.78787 * 16 14 13 45 45 H 1.08996 * 109.49900 * 301.42445 * 17 16 14 46 46 H 1.09005 * 109.49524 * 181.32587 * 17 16 14 47 47 H 1.08998 * 109.58305 * 185.58021 * 18 17 16 48 48 H 1.09000 * 109.70493 * 65.22199 * 18 17 16 49 49 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.58983 * 66.17256 * 28 19 18 51 51 H 1.08993 * 109.58892 * 186.45693 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7833 -0.3640 2.4637 6 6 2.3969 -1.2186 3.2957 7 6 3.0460 -2.1328 2.5497 8 7 2.8121 -1.8131 1.2395 9 6 3.3180 -2.5296 0.0661 10 6 4.5862 -1.8729 -0.4151 11 8 5.0239 -0.9017 0.1646 12 7 5.2339 -2.3648 -1.4899 13 6 6.4670 -1.7268 -1.9574 14 6 6.9960 -2.4757 -3.1821 15 1 7.1201 -3.5308 -2.9384 16 6 8.3474 -1.8862 -3.6041 17 6 8.8898 -2.6568 -4.8100 18 6 7.9141 -2.5146 -5.9826 19 7 6.5799 -2.9443 -5.5423 20 6 5.8885 -3.8981 -6.2403 21 1 5.1759 -4.5298 -5.7307 22 6 6.1033 -4.0531 -7.6030 23 7 6.6984 -3.0997 -8.2880 24 14 5.5478 -5.6148 -8.4644 25 1 4.1572 -5.4413 -8.9555 26 1 6.4473 -5.8934 -9.6127 27 1 5.5976 -6.7511 -7.5097 28 6 6.0018 -2.3314 -4.3386 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3744 -1.1802 4.3749 37 1 3.6378 -2.9590 2.9150 38 1 2.5708 -2.5016 -0.7269 39 1 3.5246 -3.5658 0.3342 40 1 4.8840 -3.1418 -1.9533 41 1 7.2140 -1.7548 -1.1641 42 1 6.2607 -0.6906 -2.2257 43 1 9.0517 -1.9653 -2.7760 44 1 8.2178 -0.8376 -3.8716 45 1 8.9961 -3.7102 -4.5509 46 1 9.8611 -2.2516 -5.0937 47 1 8.2448 -3.1410 -6.8110 48 1 7.8753 -1.4739 -6.3042 49 1 6.8489 -3.2082 -9.2400 50 1 5.8075 -1.2750 -4.5238 51 1 5.0694 -2.8352 -4.0839 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896629416.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:20 Heat of formation + Delta-G solvation = 10.687055 kcal Electronic energy + Delta-G solvation = -29341.048596 eV Core-core repulsion = 25468.610044 eV Total energy + Delta-G solvation = -3872.438552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.14747 -40.78801 -39.32630 -36.32063 -36.28313 -34.99679 -34.66343 -32.29307 -32.05092 -29.85476 -28.99805 -28.05969 -27.22890 -26.38520 -23.87490 -23.78698 -22.75960 -22.22937 -21.74564 -20.71028 -20.04688 -18.76355 -18.36213 -18.26873 -16.89018 -16.79812 -16.65014 -15.99637 -15.96974 -15.66859 -15.44541 -15.24016 -15.04419 -14.67064 -14.57991 -14.49582 -14.29266 -13.98818 -13.85156 -13.80626 -13.73434 -13.20715 -13.02449 -12.99582 -12.86939 -12.49282 -12.41401 -12.26598 -12.14235 -11.97812 -11.90797 -11.82139 -11.60214 -11.50345 -11.25258 -11.08176 -10.91394 -10.51936 -10.45351 -10.14758 -9.25984 -8.66331 -7.85458 -5.31239 1.00324 1.45574 1.48247 1.50671 1.59153 1.69129 2.21415 2.27835 2.52525 3.30234 3.41302 3.57617 3.63470 3.72288 3.79241 3.98830 4.01123 4.05705 4.09147 4.13281 4.19344 4.35114 4.40073 4.56682 4.60075 4.61079 4.73486 4.76434 4.78373 4.87409 4.89367 4.90663 4.93796 5.00509 5.04948 5.10820 5.21273 5.26405 5.31454 5.32895 5.36145 5.41729 5.45555 5.58233 5.68101 5.79073 5.87786 6.16914 6.40276 6.46714 7.10822 7.16340 7.18393 7.88044 8.40228 9.21018 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.002535 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.500845 B =11042.728630 C =11775.311566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.011 4.011 3 C -0.133 4.133 4 C 0.213 3.787 5 N -0.522 5.522 6 C -0.056 4.056 7 C -0.049 4.049 8 N -0.445 5.445 9 C 0.082 3.918 10 C 0.496 3.504 11 O -0.572 6.572 12 N -0.709 5.709 13 C 0.141 3.859 14 C -0.099 4.099 15 H 0.081 0.919 16 C -0.098 4.098 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.609 5.609 20 C -0.259 4.259 21 H 0.075 0.925 22 C -0.053 4.053 23 N -0.938 5.938 24 Si 0.965 3.035 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.266 1.266 28 C 0.153 3.847 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.183 0.817 37 H 0.202 0.798 38 H 0.147 0.853 39 H 0.162 0.838 40 H 0.417 0.583 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.050 0.950 48 H -0.009 1.009 49 H 0.248 0.752 50 H 0.004 0.996 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.719 -0.747 18.120 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.031 4.031 3 C -0.191 4.191 4 C -0.050 4.050 5 N -0.241 5.241 6 C -0.203 4.203 7 C -0.181 4.181 8 N -0.127 5.127 9 C -0.044 4.044 10 C 0.281 3.719 11 O -0.450 6.450 12 N -0.362 5.362 13 C 0.016 3.984 14 C -0.120 4.120 15 H 0.099 0.901 16 C -0.136 4.136 17 C -0.169 4.169 18 C 0.046 3.954 19 N -0.332 5.332 20 C -0.389 4.389 21 H 0.092 0.908 22 C -0.249 4.249 23 N -0.584 5.584 24 Si 0.793 3.207 25 H -0.212 1.212 26 H -0.225 1.225 27 H -0.191 1.191 28 C 0.027 3.973 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.200 0.800 37 H 0.219 0.781 38 H 0.165 0.835 39 H 0.180 0.820 40 H 0.254 0.746 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.009 0.991 49 H 0.057 0.943 50 H 0.021 0.979 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.802 0.511 18.503 19.720 hybrid contribution 0.496 -1.391 -1.344 1.997 sum -6.306 -0.880 17.159 18.302 Atomic orbital electron populations 1.21730 0.91840 1.02467 1.02952 1.19652 0.97445 0.95530 0.90515 1.21689 0.99912 0.94710 1.02785 1.23485 0.96820 0.88871 0.95799 1.70122 1.25826 1.28123 1.00015 1.22654 1.02089 0.95037 1.00483 1.23133 1.07252 1.05367 0.82388 1.45029 1.37875 1.23066 1.06700 1.21996 0.94842 0.98563 0.89016 1.21158 0.86234 0.84141 0.80369 1.90777 1.68419 1.28273 1.57575 1.45899 1.26351 1.33786 1.30135 1.21215 0.85633 0.96216 0.95306 1.21768 0.96385 1.00229 0.93604 0.90100 1.21391 0.95762 0.98839 0.97644 1.21989 0.98405 1.00017 0.96443 1.20619 0.84427 0.95602 0.94709 1.44296 1.15157 1.45362 1.28381 1.19548 1.20363 1.09092 0.89880 0.90753 1.25816 1.01506 1.00403 0.97141 1.70198 1.48514 1.32855 1.06839 0.85319 0.77162 0.80325 0.77888 1.21239 1.22516 1.19087 1.21031 0.95068 0.94860 0.86343 0.92637 0.90113 0.92263 0.89453 0.92549 0.94737 0.90115 0.79970 0.78094 0.83494 0.82026 0.74600 0.91246 0.92771 0.90374 0.92931 0.92665 0.91526 0.93149 0.99133 0.94299 0.97852 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.18 71.98 0.66 -1.54 16 2 C -0.01 -0.23 3.25 -11.54 -0.04 -0.26 16 3 C -0.13 -2.93 9.18 71.98 0.66 -2.27 16 4 C 0.21 5.18 6.39 138.13 0.88 6.07 16 5 N -0.52 -14.50 11.25 -188.12 -2.12 -16.62 16 6 C -0.06 -1.30 11.87 83.52 0.99 -0.31 16 7 C -0.05 -0.96 11.58 83.09 0.96 0.00 16 8 N -0.44 -9.02 2.24 -518.33 -1.16 -10.18 16 9 C 0.08 1.09 6.16 85.63 0.53 1.62 16 10 C 0.50 10.35 7.90 87.66 0.69 11.05 16 11 O -0.57 -17.75 16.41 -3.03 -0.05 -17.80 16 12 N -0.71 -13.43 5.33 -463.05 -2.47 -15.89 16 13 C 0.14 3.32 5.08 86.38 0.44 3.76 16 14 C -0.10 -2.72 2.39 -10.61 -0.03 -2.75 16 15 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 16 C -0.10 -2.80 5.19 30.73 0.16 -2.64 16 17 C -0.13 -4.46 6.08 30.68 0.19 -4.28 16 18 C 0.17 7.95 5.30 86.36 0.46 8.41 16 19 N -0.61 -28.23 2.99 -699.09 -2.09 -30.32 16 20 C -0.26 -13.18 9.58 84.03 0.81 -12.38 16 21 H 0.07 3.56 7.89 -2.91 -0.02 3.53 16 22 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 23 N -0.94 -54.14 11.20 21.65 0.24 -53.90 16 24 Si 0.96 42.66 29.59 68.60 2.03 44.69 16 25 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 26 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 C 0.15 5.45 5.59 86.36 0.48 5.94 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.09 1.54 6.85 -2.38 -0.02 1.53 16 33 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.20 2.42 8.06 -2.91 -0.02 2.39 16 38 H 0.15 1.27 7.30 -2.39 -0.02 1.25 16 39 H 0.16 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.42 6.03 7.70 -92.71 -0.71 5.31 16 41 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 47 H 0.05 2.67 6.06 -2.39 -0.01 2.66 16 48 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 49 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 50 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 51 H 0.06 2.05 7.13 -2.39 -0.02 2.03 16 Total: -1.00 -75.05 407.59 2.84 -72.21 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.19 Total: 19.85 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 8.26 Total: 7.96 kcal Atomic # 7 Polarization: -119.31 SS G_CDS: -7.60 Total: -126.91 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.05 Total: -17.80 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -75.05 2.84 -72.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896629416.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.899 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds