Wall clock time and date at job start Tue Mar 31 2020 19:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47090 * 2 1 4 4 C 1.50697 * 109.47279 * 180.02562 * 3 2 1 5 5 N 1.30453 * 125.98782 * 270.00031 * 4 3 2 6 6 N 1.39932 * 108.89703 * 180.02562 * 5 4 3 7 7 H 0.96999 * 125.75438 * 180.02562 * 6 5 4 8 8 C 1.34259 * 108.49113 * 359.74957 * 6 5 4 9 9 C 1.38044 * 107.41657 * 0.39530 * 8 6 5 10 10 C 1.47428 * 126.41159 * 179.87226 * 9 8 6 11 11 O 1.21602 * 119.99859 * 179.68971 * 10 9 8 12 12 N 1.34772 * 120.00400 * 359.68467 * 10 9 8 13 13 C 1.46496 * 120.00284 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.44992 * 34.97196 * 13 12 10 15 15 C 1.53042 * 109.46338 * 275.00358 * 13 12 10 16 16 C 1.53187 * 109.31387 * 178.61305 * 15 13 12 17 17 N 1.46923 * 108.77603 * 54.63563 * 16 15 13 18 18 C 1.36944 * 120.63179 * 126.37051 * 17 16 15 19 19 H 1.08006 * 119.99668 * 331.59560 * 18 17 16 20 20 C 1.38807 * 120.00333 * 151.60135 * 18 17 16 21 21 N 1.31617 * 120.00050 * 160.73351 * 20 18 17 22 22 Si 1.86804 * 119.99858 * 340.73940 * 20 18 17 23 23 H 1.48495 * 109.47308 * 95.16163 * 22 20 18 24 24 H 1.48498 * 109.46832 * 215.16270 * 22 20 18 25 25 H 1.48500 * 109.46907 * 335.16135 * 22 20 18 26 26 C 1.46926 * 118.74241 * 306.64172 * 17 16 15 27 27 C 1.52760 * 109.00434 * 53.30762 * 26 17 16 28 28 C 1.53004 * 109.56806 * 185.55696 * 27 26 17 29 29 C 1.53000 * 109.36056 * 65.50252 * 27 26 17 30 30 H 1.08998 * 109.47115 * 60.00094 * 1 2 3 31 31 H 1.09003 * 109.47252 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47068 * 299.99959 * 1 2 3 33 33 H 1.08995 * 109.47233 * 240.00191 * 2 1 3 34 34 H 1.08998 * 109.47115 * 119.99906 * 2 1 3 35 35 H 1.09004 * 109.47131 * 60.00079 * 3 2 1 36 36 H 1.08996 * 109.47482 * 300.00251 * 3 2 1 37 37 H 1.07999 * 126.29104 * 180.24487 * 8 6 5 38 38 H 0.97000 * 120.00158 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.49481 * 58.66143 * 15 13 12 40 40 H 1.09004 * 109.52173 * 298.58261 * 15 13 12 41 41 H 1.09003 * 109.58966 * 294.85073 * 16 15 13 42 42 H 1.09003 * 109.70567 * 174.49212 * 16 15 13 43 43 H 0.97004 * 119.99787 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.58939 * 173.14384 * 26 17 16 45 45 H 1.09007 * 109.58531 * 293.57508 * 26 17 16 46 46 H 1.08989 * 109.47870 * 179.97438 * 28 27 26 47 47 H 1.09007 * 109.46654 * 299.96941 * 28 27 26 48 48 H 1.09001 * 109.46763 * 59.95866 * 28 27 26 49 49 H 1.09001 * 109.46895 * 300.15902 * 29 27 26 50 50 H 1.09003 * 109.47218 * 60.15877 * 29 27 26 51 51 H 1.08999 * 109.47090 * 180.15937 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3139 1.4424 1.0546 6 7 5.6513 1.4431 0.6428 7 1 6.4246 1.4429 1.2283 8 6 5.6835 1.4382 -0.6994 9 6 4.3767 1.4434 -1.1441 10 6 3.9305 1.4433 -2.5493 11 8 2.7428 1.4425 -2.8100 12 7 4.8389 1.4442 -3.5448 13 6 4.3955 1.4435 -4.9411 14 1 3.4823 2.0316 -5.0321 15 6 4.1227 0.0057 -5.3888 16 6 3.6263 0.0119 -6.8380 17 7 4.6033 0.7277 -7.6696 18 6 5.1298 0.1406 -8.7892 19 1 5.2203 -0.9343 -8.8435 20 6 5.5473 0.9269 -9.8542 21 7 6.3800 0.4364 -10.7476 22 14 4.9274 2.6814 -10.0192 23 1 5.9106 3.6131 -9.4106 24 1 4.7557 3.0124 -11.4566 25 1 3.6231 2.8131 -9.3216 26 6 5.0095 2.0832 -7.2739 27 6 5.4863 2.0559 -5.8228 28 6 5.7814 3.4820 -5.3535 29 6 6.7580 1.2112 -5.7226 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 6.5691 1.4336 -1.3175 38 1 5.7864 1.4444 -3.3369 39 1 3.3624 -0.4376 -4.7457 40 1 5.0413 -0.5773 -5.3214 41 1 2.6615 0.5165 -6.8917 42 1 3.5231 -1.0127 -7.1956 43 1 6.6715 0.9858 -11.4921 44 1 5.8206 2.4241 -7.9172 45 1 4.1598 2.7601 -7.3637 46 1 6.1209 3.4609 -4.3181 47 1 6.5583 3.9177 -5.9818 48 1 4.8752 4.0833 -5.4267 49 1 6.5471 0.1958 -6.0584 50 1 7.5346 1.6477 -6.3507 51 1 7.0982 1.1882 -4.6873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940856620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:35 Heat of formation + Delta-G solvation = 42.874410 kcal Electronic energy + Delta-G solvation = -30437.592422 eV Core-core repulsion = 26566.549618 eV Total energy + Delta-G solvation = -3871.042804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.66448 -39.87446 -38.04467 -35.42678 -34.64476 -33.02319 -32.10823 -31.79827 -30.88290 -29.60917 -27.26443 -26.93505 -26.23471 -25.14519 -23.36456 -22.41714 -21.99126 -20.56582 -20.29099 -19.76762 -19.00928 -18.11736 -16.93750 -16.36454 -15.64554 -15.39076 -15.23959 -14.94207 -14.59414 -14.41787 -14.33174 -14.02421 -13.80135 -13.64894 -13.34266 -13.24285 -13.10959 -12.74220 -12.43583 -12.11648 -12.02277 -11.75904 -11.69821 -11.66074 -11.37365 -11.27270 -11.16725 -11.09100 -10.75727 -10.70527 -10.64738 -10.42468 -10.15308 -9.89636 -9.80579 -9.74536 -9.58753 -9.43061 -9.07965 -8.65872 -8.61599 -6.94551 -5.94792 -3.31714 1.27633 1.98901 2.41676 3.31491 3.39449 3.49109 3.50426 3.52487 4.23162 4.37239 4.52982 4.83984 4.92010 4.94887 5.00014 5.06361 5.14679 5.24482 5.26220 5.31073 5.39444 5.43316 5.63496 5.71181 5.73620 5.75245 5.80200 5.86782 5.92760 5.93670 6.03423 6.13094 6.17145 6.22355 6.23661 6.27494 6.31759 6.37757 6.43003 6.48786 6.59718 6.66350 6.70405 6.78273 6.82848 6.85456 7.02724 7.27950 7.73332 7.97633 8.33510 8.44400 8.94625 9.72394 10.10728 11.21241 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.003117 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.003019 B = 8980.361960 C = 9682.766283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.045 4.045 4 C 0.138 3.862 5 N -0.301 5.301 6 N -0.463 5.463 7 H 0.443 0.557 8 C 0.101 3.899 9 C -0.280 4.280 10 C 0.589 3.411 11 O -0.539 6.539 12 N -0.719 5.719 13 C 0.166 3.834 14 H 0.083 0.917 15 C -0.144 4.144 16 C 0.150 3.850 17 N -0.603 5.603 18 C -0.256 4.256 19 H 0.085 0.915 20 C 0.025 3.975 21 N -0.910 5.910 22 Si 0.878 3.122 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.268 1.268 26 C 0.141 3.859 27 C -0.090 4.090 28 C -0.139 4.139 29 C -0.129 4.129 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.184 0.816 38 H 0.392 0.608 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.025 0.975 42 H 0.065 0.935 43 H 0.262 0.738 44 H 0.075 0.925 45 H 0.027 0.973 46 H 0.049 0.951 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.076 0.924 50 H 0.054 0.946 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 2.830 23.126 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.084 4.084 4 C -0.030 4.030 5 N -0.123 5.123 6 N -0.168 5.168 7 H 0.287 0.713 8 C -0.052 4.052 9 C -0.296 4.296 10 C 0.376 3.624 11 O -0.417 6.417 12 N -0.370 5.370 13 C 0.062 3.938 14 H 0.101 0.899 15 C -0.184 4.184 16 C 0.024 3.976 17 N -0.326 5.326 18 C -0.384 4.384 19 H 0.103 0.897 20 C -0.174 4.174 21 N -0.553 5.553 22 Si 0.709 3.291 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.193 1.193 26 C 0.015 3.985 27 C -0.092 4.092 28 C -0.197 4.197 29 C -0.186 4.186 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.201 0.799 38 H 0.226 0.774 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.045 0.955 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.877 2.837 24.015 24.255 hybrid contribution 0.989 1.069 -0.685 1.610 sum -0.887 3.906 23.330 23.671 Atomic orbital electron populations 1.21735 0.95324 1.01668 1.01934 1.21357 0.96003 0.95360 1.02140 1.20237 0.85254 0.98774 1.04174 1.22482 0.97104 0.94709 0.88665 1.77165 0.86187 1.26427 1.22505 1.46094 1.07856 1.57367 1.05435 0.71279 1.23159 0.99102 0.97248 0.85685 1.20434 0.91962 1.22139 0.95016 1.17218 0.85868 0.75999 0.83315 1.90743 1.16164 1.50618 1.84141 1.46110 1.09109 1.75297 1.06473 1.20919 0.97459 0.97227 0.78156 0.89866 1.22441 1.01503 0.95856 0.98596 1.20904 0.91201 0.96981 0.88520 1.44347 1.46898 1.13890 1.27506 1.18901 1.35091 0.93215 0.91200 0.89716 1.25285 0.98512 0.97696 0.95924 1.69821 1.32756 1.37313 1.15415 0.86995 0.80102 0.86058 0.75944 1.21712 1.23211 1.19260 1.21304 0.97794 0.87825 0.91601 1.21295 0.95581 0.94642 0.97721 1.21825 1.01455 0.96123 1.00282 1.21770 0.96102 1.01909 0.98846 0.92144 0.92733 0.92953 0.91342 0.92461 0.90776 0.87880 0.79893 0.77369 0.92187 0.91521 0.95727 0.91663 0.92830 0.90717 0.95544 0.93167 0.92581 0.92904 0.90555 0.92703 0.94841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.11 -1.16 5.92 -26.73 -0.16 -1.32 16 3 C -0.05 -0.50 5.25 -27.88 -0.15 -0.65 16 4 C 0.14 1.66 6.52 -82.02 -0.53 1.12 16 5 N -0.30 -3.37 12.63 33.89 0.43 -2.94 16 6 N -0.46 -3.55 7.29 30.85 0.22 -3.33 16 7 H 0.44 1.76 8.96 -182.73 -1.64 0.12 16 8 C 0.10 0.79 11.52 -16.56 -0.19 0.60 16 9 C -0.28 -3.23 6.13 -105.07 -0.64 -3.88 16 10 C 0.59 8.09 7.78 -12.52 -0.10 7.99 16 11 O -0.54 -9.05 14.58 5.28 0.08 -8.98 16 12 N -0.72 -9.01 4.28 -54.84 -0.23 -9.24 16 13 C 0.17 2.58 1.57 -67.89 -0.11 2.47 16 14 H 0.08 1.46 7.57 -51.93 -0.39 1.07 16 15 C -0.14 -2.38 5.31 -26.61 -0.14 -2.52 16 16 C 0.15 2.94 6.52 -3.71 -0.02 2.92 16 17 N -0.60 -13.71 2.20 -172.58 -0.38 -14.09 16 18 C -0.26 -6.89 10.03 -15.06 -0.15 -7.04 16 19 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 20 C 0.02 0.69 5.25 -17.43 -0.09 0.60 16 21 N -0.91 -27.37 13.97 55.49 0.78 -26.60 16 22 Si 0.88 22.03 24.36 -169.99 -4.14 17.89 16 23 H -0.29 -6.97 6.74 56.52 0.38 -6.59 16 24 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 25 H -0.27 -6.63 6.41 56.52 0.36 -6.26 16 26 C 0.14 2.93 2.82 -3.93 -0.01 2.92 16 27 C -0.09 -1.45 0.56 -154.61 -0.09 -1.54 16 28 C -0.14 -1.92 8.31 37.16 0.31 -1.61 16 29 C -0.13 -1.99 7.82 37.16 0.29 -1.70 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.10 1.30 6.55 -51.93 -0.34 0.96 16 37 H 0.18 0.74 7.46 -52.49 -0.39 0.35 16 38 H 0.39 3.90 5.59 -40.82 -0.23 3.67 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 43 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.07 1.71 4.63 -51.93 -0.24 1.47 16 45 H 0.03 0.57 6.93 -51.93 -0.36 0.21 16 46 H 0.05 0.57 7.36 -51.94 -0.38 0.19 16 47 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 50 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.03 0.39 6.58 -51.93 -0.34 0.05 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -33.07 388.58 -8.44 -41.52 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -9.63 Total: 2.54 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.42 Total: -2.63 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.81 Total: -56.20 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.07 -8.44 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940856620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.390 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds