Wall clock time and date at job start Tue Mar 31 2020 19:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47090 * 2 1 4 4 C 1.50697 * 109.47279 * 180.02562 * 3 2 1 5 5 N 1.30453 * 125.98782 * 270.00031 * 4 3 2 6 6 N 1.39932 * 108.89703 * 180.02562 * 5 4 3 7 7 H 0.96999 * 125.75438 * 180.02562 * 6 5 4 8 8 C 1.34259 * 108.49113 * 359.74957 * 6 5 4 9 9 C 1.38044 * 107.41657 * 0.39530 * 8 6 5 10 10 C 1.47428 * 126.41159 * 179.87226 * 9 8 6 11 11 O 1.21602 * 119.99859 * 179.68971 * 10 9 8 12 12 N 1.34772 * 120.00400 * 359.68467 * 10 9 8 13 13 C 1.46496 * 120.00284 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.44992 * 34.97196 * 13 12 10 15 15 C 1.53042 * 109.46338 * 275.00358 * 13 12 10 16 16 C 1.53187 * 109.31387 * 178.61305 * 15 13 12 17 17 N 1.46923 * 108.77603 * 54.63563 * 16 15 13 18 18 C 1.36944 * 120.63179 * 126.37051 * 17 16 15 19 19 H 1.08006 * 119.99668 * 331.59560 * 18 17 16 20 20 C 1.38807 * 120.00333 * 151.60135 * 18 17 16 21 21 N 1.31617 * 120.00050 * 160.73351 * 20 18 17 22 22 Si 1.86804 * 119.99858 * 340.73940 * 20 18 17 23 23 H 1.48495 * 109.47308 * 95.16163 * 22 20 18 24 24 H 1.48498 * 109.46832 * 215.16270 * 22 20 18 25 25 H 1.48500 * 109.46907 * 335.16135 * 22 20 18 26 26 C 1.46926 * 118.74241 * 306.64172 * 17 16 15 27 27 C 1.52760 * 109.00434 * 53.30762 * 26 17 16 28 28 C 1.53004 * 109.56806 * 185.55696 * 27 26 17 29 29 C 1.53000 * 109.36056 * 65.50252 * 27 26 17 30 30 H 1.08998 * 109.47115 * 60.00094 * 1 2 3 31 31 H 1.09003 * 109.47252 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47068 * 299.99959 * 1 2 3 33 33 H 1.08995 * 109.47233 * 240.00191 * 2 1 3 34 34 H 1.08998 * 109.47115 * 119.99906 * 2 1 3 35 35 H 1.09004 * 109.47131 * 60.00079 * 3 2 1 36 36 H 1.08996 * 109.47482 * 300.00251 * 3 2 1 37 37 H 1.07999 * 126.29104 * 180.24487 * 8 6 5 38 38 H 0.97000 * 120.00158 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.49481 * 58.66143 * 15 13 12 40 40 H 1.09004 * 109.52173 * 298.58261 * 15 13 12 41 41 H 1.09003 * 109.58966 * 294.85073 * 16 15 13 42 42 H 1.09003 * 109.70567 * 174.49212 * 16 15 13 43 43 H 0.97004 * 119.99787 * 179.97438 * 21 20 18 44 44 H 1.08997 * 109.58939 * 173.14384 * 26 17 16 45 45 H 1.09007 * 109.58531 * 293.57508 * 26 17 16 46 46 H 1.08989 * 109.47870 * 179.97438 * 28 27 26 47 47 H 1.09007 * 109.46654 * 299.96941 * 28 27 26 48 48 H 1.09001 * 109.46763 * 59.95866 * 28 27 26 49 49 H 1.09001 * 109.46895 * 300.15902 * 29 27 26 50 50 H 1.09003 * 109.47218 * 60.15877 * 29 27 26 51 51 H 1.08999 * 109.47090 * 180.15937 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3139 1.4424 1.0546 6 7 5.6513 1.4431 0.6428 7 1 6.4246 1.4429 1.2283 8 6 5.6835 1.4382 -0.6994 9 6 4.3767 1.4434 -1.1441 10 6 3.9305 1.4433 -2.5493 11 8 2.7428 1.4425 -2.8100 12 7 4.8389 1.4442 -3.5448 13 6 4.3955 1.4435 -4.9411 14 1 3.4823 2.0316 -5.0321 15 6 4.1227 0.0057 -5.3888 16 6 3.6263 0.0119 -6.8380 17 7 4.6033 0.7277 -7.6696 18 6 5.1298 0.1406 -8.7892 19 1 5.2203 -0.9343 -8.8435 20 6 5.5473 0.9269 -9.8542 21 7 6.3800 0.4364 -10.7476 22 14 4.9274 2.6814 -10.0192 23 1 5.9106 3.6131 -9.4106 24 1 4.7557 3.0124 -11.4566 25 1 3.6231 2.8131 -9.3216 26 6 5.0095 2.0832 -7.2739 27 6 5.4863 2.0559 -5.8228 28 6 5.7814 3.4820 -5.3535 29 6 6.7580 1.2112 -5.7226 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 6.5691 1.4336 -1.3175 38 1 5.7864 1.4444 -3.3369 39 1 3.3624 -0.4376 -4.7457 40 1 5.0413 -0.5773 -5.3214 41 1 2.6615 0.5165 -6.8917 42 1 3.5231 -1.0127 -7.1956 43 1 6.6715 0.9858 -11.4921 44 1 5.8206 2.4241 -7.9172 45 1 4.1598 2.7601 -7.3637 46 1 6.1209 3.4609 -4.3181 47 1 6.5583 3.9177 -5.9818 48 1 4.8752 4.0833 -5.4267 49 1 6.5471 0.1958 -6.0584 50 1 7.5346 1.6477 -6.3507 51 1 7.0982 1.1882 -4.6873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940856620.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:34 Heat of formation + Delta-G solvation = 20.539655 kcal Electronic energy + Delta-G solvation = -30438.560930 eV Core-core repulsion = 26566.549618 eV Total energy + Delta-G solvation = -3872.011311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.43441 -41.12984 -39.30399 -36.45235 -36.01233 -34.31710 -33.92128 -32.55866 -32.21316 -30.80634 -28.17019 -28.05763 -27.70789 -26.76864 -24.69088 -23.55547 -22.84760 -22.15740 -21.27307 -20.69158 -20.04624 -19.39678 -18.54143 -17.48644 -17.13271 -16.55635 -16.22589 -16.06621 -16.00888 -15.53244 -15.35785 -15.34152 -15.09646 -14.91719 -14.69964 -14.38609 -14.17756 -14.13354 -13.89657 -13.68028 -13.17587 -12.97719 -12.89732 -12.81223 -12.59005 -12.43710 -12.36845 -12.25057 -12.15626 -12.05460 -11.95007 -11.78822 -11.54764 -11.49016 -11.37732 -11.13989 -10.82822 -10.61037 -10.49378 -10.02111 -9.66842 -8.88292 -8.13541 -5.45855 0.58985 1.12093 1.29387 1.42782 1.50743 1.82868 2.33815 2.42963 2.53591 3.09193 3.35152 3.47868 3.66731 3.76315 3.94914 4.00333 4.13584 4.18029 4.23515 4.34335 4.36329 4.39182 4.43777 4.55300 4.62022 4.62681 4.72016 4.82240 4.86812 4.88010 4.89900 4.92435 5.00722 5.02376 5.04844 5.09611 5.14819 5.16696 5.25640 5.35596 5.37269 5.39868 5.43554 5.48051 5.64544 5.69457 5.91299 6.16328 6.29381 6.52404 6.78391 6.94407 7.44580 7.64873 8.06393 9.06442 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.003117 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.003019 B = 8980.361960 C = 9682.766283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.044 4.044 4 C 0.124 3.876 5 N -0.323 5.323 6 N -0.446 5.446 7 H 0.461 0.539 8 C 0.134 3.866 9 C -0.315 4.315 10 C 0.591 3.409 11 O -0.577 6.577 12 N -0.705 5.705 13 C 0.178 3.822 14 H 0.064 0.936 15 C -0.130 4.130 16 C 0.146 3.854 17 N -0.613 5.613 18 C -0.238 4.238 19 H 0.054 0.946 20 C -0.029 4.029 21 N -0.956 5.956 22 Si 0.936 3.064 23 H -0.273 1.273 24 H -0.314 1.314 25 H -0.265 1.265 26 C 0.136 3.864 27 C -0.082 4.082 28 C -0.136 4.136 29 C -0.125 4.125 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.231 0.769 38 H 0.408 0.592 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.058 0.942 43 H 0.260 0.740 44 H 0.054 0.946 45 H 0.022 0.978 46 H 0.082 0.918 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.048 0.952 50 H 0.043 0.957 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 4.106 26.336 26.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.142 4.142 3 C -0.083 4.083 4 C -0.043 4.043 5 N -0.146 5.146 6 N -0.152 5.152 7 H 0.309 0.691 8 C -0.020 4.020 9 C -0.330 4.330 10 C 0.380 3.620 11 O -0.457 6.457 12 N -0.357 5.357 13 C 0.073 3.927 14 H 0.082 0.918 15 C -0.170 4.170 16 C 0.021 3.979 17 N -0.337 5.337 18 C -0.368 4.368 19 H 0.072 0.928 20 C -0.224 4.224 21 N -0.603 5.603 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.243 1.243 25 H -0.189 1.189 26 C 0.010 3.990 27 C -0.084 4.084 28 C -0.193 4.193 29 C -0.182 4.182 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.247 0.753 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.040 0.960 46 H 0.101 0.899 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.062 0.938 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.539 4.129 27.314 27.630 hybrid contribution 0.587 0.580 -1.592 1.793 sum 0.048 4.709 25.722 26.150 Atomic orbital electron populations 1.21720 0.94376 1.02197 1.02116 1.21280 0.96823 0.94938 1.01163 1.20168 0.85702 0.98818 1.03617 1.22570 0.97390 0.95126 0.89258 1.77112 0.87651 1.27236 1.22617 1.46139 1.07441 1.55683 1.05958 0.69090 1.23731 0.99055 0.93494 0.85763 1.20297 0.93673 1.25576 0.93492 1.17509 0.85327 0.74963 0.84224 1.90733 1.17909 1.52306 1.84777 1.45776 1.09897 1.75195 1.04790 1.20534 0.96572 0.95755 0.79800 0.91775 1.22255 1.01547 0.97043 0.96179 1.21009 0.90678 0.96204 0.90023 1.44415 1.47701 1.14736 1.26831 1.18814 1.33413 0.92077 0.92463 0.92842 1.25814 0.99182 1.01376 0.96008 1.69938 1.34865 1.38955 1.16538 0.86053 0.79897 0.82331 0.75129 1.19911 1.24312 1.18937 1.21338 0.96899 0.86232 0.94508 1.21133 0.95865 0.96848 0.94542 1.21809 1.01506 0.93827 1.02185 1.21721 0.95257 0.99759 1.01479 0.93152 0.92037 0.91551 0.93518 0.92014 0.89816 0.89800 0.75307 0.75404 0.91866 0.91128 0.95749 0.92381 0.93052 0.92779 0.96020 0.89885 0.92447 0.93243 0.93338 0.93829 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.91 71.98 0.71 -1.89 16 2 C -0.10 -2.16 5.92 30.59 0.18 -1.97 16 3 C -0.04 -0.96 5.25 29.85 0.16 -0.80 16 4 C 0.12 2.76 6.52 43.51 0.28 3.05 16 5 N -0.32 -6.43 12.63 -46.68 -0.59 -7.02 16 6 N -0.45 -5.01 7.29 -56.32 -0.41 -5.42 16 7 H 0.46 1.57 8.96 -213.43 -1.91 -0.34 16 8 C 0.13 1.46 11.52 84.28 0.97 2.43 16 9 C -0.32 -6.39 6.13 -20.15 -0.12 -6.51 16 10 C 0.59 14.98 7.78 86.66 0.67 15.65 16 11 O -0.58 -19.13 14.58 -4.04 -0.06 -19.19 16 12 N -0.70 -15.31 4.28 -445.68 -1.91 -17.22 16 13 C 0.18 5.18 1.57 45.02 0.07 5.26 16 14 H 0.06 2.17 7.57 -2.39 -0.02 2.16 16 15 C -0.13 -4.18 5.31 30.67 0.16 -4.02 16 16 C 0.15 5.76 6.52 86.36 0.56 6.33 16 17 N -0.61 -28.07 2.20 -699.93 -1.54 -29.61 16 18 C -0.24 -13.18 10.03 84.03 0.84 -12.34 16 19 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 20 C -0.03 -1.67 5.25 84.86 0.45 -1.23 16 21 N -0.96 -59.31 13.97 21.65 0.30 -59.01 16 22 Si 0.94 46.31 24.36 68.60 1.67 47.98 16 23 H -0.27 -12.60 6.74 99.48 0.67 -11.92 16 24 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 25 H -0.26 -12.78 6.41 99.48 0.64 -12.14 16 26 C 0.14 5.53 2.82 86.22 0.24 5.78 16 27 C -0.08 -2.45 0.56 -52.24 -0.03 -2.48 16 28 C -0.14 -3.26 8.31 71.98 0.60 -2.66 16 29 C -0.12 -3.52 7.82 71.98 0.56 -2.95 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.08 2.16 6.55 -2.39 -0.02 2.14 16 37 H 0.23 0.20 7.46 -2.91 -0.02 0.18 16 38 H 0.41 5.99 5.59 -92.71 -0.52 5.47 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.07 2.23 6.34 -2.38 -0.02 2.22 16 41 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 43 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 44 H 0.05 2.44 4.63 -2.39 -0.01 2.43 16 45 H 0.02 0.91 6.93 -2.38 -0.02 0.90 16 46 H 0.08 1.46 7.36 -2.39 -0.02 1.45 16 47 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 48 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.05 1.65 5.97 -2.39 -0.01 1.64 16 50 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.08 1.47 6.58 -2.39 -0.02 1.46 16 Total: -1.00 -75.86 388.58 2.20 -73.66 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -1.59 Total: 14.19 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 6.32 Total: 1.62 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -4.14 Total: -118.27 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.06 Total: -19.19 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.67 Total: 47.98 kcal Total: -75.86 2.20 -73.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940856620.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.201 kcal (2) G-P(sol) polarization free energy of solvation -75.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds