Wall clock time and date at job start Tue Mar 31 2020 19:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47409 * 2 1 4 4 C 1.50696 * 109.47284 * 120.00485 * 2 1 3 5 5 N 1.30451 * 125.98596 * 300.00082 * 4 2 1 6 6 N 1.39934 * 108.89526 * 179.97438 * 5 4 2 7 7 H 0.97005 * 125.74919 * 180.02562 * 6 5 4 8 8 C 1.34263 * 108.49591 * 359.74971 * 6 5 4 9 9 C 1.38046 * 107.41188 * 0.39043 * 8 6 5 10 10 C 1.47429 * 126.41419 * 179.87071 * 9 8 6 11 11 O 1.21600 * 120.00400 * 179.69152 * 10 9 8 12 12 N 1.34783 * 119.99493 * 359.69321 * 10 9 8 13 13 C 1.46504 * 119.99600 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.46134 * 34.97219 * 13 12 10 15 15 C 1.53042 * 109.46066 * 274.99908 * 13 12 10 16 16 C 1.53187 * 109.31207 * 178.62831 * 15 13 12 17 17 N 1.46920 * 108.77436 * 54.64066 * 16 15 13 18 18 C 1.36940 * 120.63357 * 126.36916 * 17 16 15 19 19 H 1.07997 * 119.99487 * 332.50127 * 18 17 16 20 20 C 1.38809 * 120.00020 * 152.50088 * 18 17 16 21 21 N 1.31625 * 120.00314 * 335.02519 * 20 18 17 22 22 Si 1.86803 * 119.99831 * 155.01934 * 20 18 17 23 23 H 1.48499 * 109.47125 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46931 * 120.00189 * 22 20 18 25 25 H 1.48496 * 109.47273 * 240.00296 * 22 20 18 26 26 C 1.46928 * 118.73646 * 306.63846 * 17 16 15 27 27 C 1.52760 * 109.01045 * 53.31323 * 26 17 16 28 28 C 1.52999 * 109.56735 * 185.55362 * 27 26 17 29 29 C 1.52998 * 109.38392 * 65.51403 * 27 26 17 30 30 H 1.09002 * 109.47154 * 300.00027 * 1 2 3 31 31 H 1.09000 * 109.47156 * 59.99953 * 1 2 3 32 32 H 1.09003 * 109.47432 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47154 * 239.99973 * 2 1 3 34 34 H 1.09000 * 109.47204 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47323 * 300.00438 * 3 2 1 36 36 H 1.09002 * 109.46985 * 59.99869 * 3 2 1 37 37 H 1.08000 * 126.29129 * 180.24929 * 8 6 5 38 38 H 0.97002 * 120.00091 * 0.02562 * 12 10 9 39 39 H 1.09009 * 109.49443 * 58.67903 * 15 13 12 40 40 H 1.09000 * 109.52639 * 298.60280 * 15 13 12 41 41 H 1.08996 * 109.58664 * 294.84755 * 16 15 13 42 42 H 1.09003 * 109.58135 * 174.42479 * 16 15 13 43 43 H 0.96998 * 119.99686 * 354.25090 * 21 20 18 44 44 H 1.09007 * 109.58583 * 173.14684 * 26 17 16 45 45 H 1.08998 * 109.58571 * 293.57108 * 26 17 16 46 46 H 1.08993 * 109.46899 * 179.97438 * 28 27 26 47 47 H 1.09000 * 109.46931 * 299.96216 * 28 27 26 48 48 H 1.08999 * 109.47077 * 59.95980 * 28 27 26 49 49 H 1.09008 * 109.47093 * 300.14393 * 29 27 26 50 50 H 1.09000 * 109.47424 * 60.14556 * 29 27 26 51 51 H 1.09004 * 109.47048 * 180.14657 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7903 -0.3682 2.4657 6 7 2.4295 -1.2733 3.3202 7 1 2.4106 -1.2475 4.2898 8 6 3.0684 -2.1870 2.5721 9 6 2.8475 -1.8644 1.2482 10 6 3.3608 -2.5915 0.0728 11 8 3.0880 -2.2058 -1.0476 12 7 4.1325 -3.6838 0.2404 13 6 4.6422 -4.4066 -0.9276 14 1 4.8620 -3.6978 -1.7258 15 6 3.5876 -5.4057 -1.4090 16 6 4.1102 -6.1352 -2.6505 17 7 5.4115 -6.7382 -2.3319 18 6 5.6341 -8.0720 -2.5478 19 1 4.8092 -8.7685 -2.5200 20 6 6.9199 -8.5287 -2.8024 21 7 7.8179 -7.7149 -3.3160 22 14 7.3761 -10.2985 -2.4158 23 1 6.1966 -11.0014 -1.8502 24 1 7.8085 -10.9816 -3.6615 25 1 8.4855 -10.3195 -1.4290 26 6 6.4676 -5.8841 -1.7715 27 6 5.9204 -5.1562 -0.5449 28 6 6.9627 -4.1601 -0.0329 29 6 5.6058 -6.1754 0.5520 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.6503 -3.0197 2.9388 38 1 4.3498 -3.9917 1.1342 39 1 2.6697 -4.8735 -1.6592 40 1 3.3847 -6.1298 -0.6200 41 1 4.2270 -5.4253 -3.4693 42 1 3.4064 -6.9160 -2.9388 43 1 7.5604 -6.8220 -3.5941 44 1 7.3188 -6.4994 -1.4799 45 1 6.7806 -5.1533 -2.5171 46 1 6.5705 -3.6415 0.8419 47 1 7.8728 -4.6945 0.2395 48 1 7.1874 -3.4351 -0.8151 49 1 4.8640 -6.8855 0.1863 50 1 6.5164 -6.7091 0.8241 51 1 5.2128 -5.6577 1.4270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940859572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:43 Heat of formation + Delta-G solvation = 37.504167 kcal Electronic energy + Delta-G solvation = -30449.680889 eV Core-core repulsion = 26578.405214 eV Total energy + Delta-G solvation = -3871.275675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.67206 -39.79297 -37.97008 -35.76829 -34.70439 -32.94696 -32.17736 -30.99337 -30.57134 -28.94917 -27.21569 -26.87265 -26.11849 -25.01897 -23.55218 -23.12359 -21.82646 -20.73068 -19.97128 -19.37170 -18.88601 -17.79780 -17.33764 -16.41753 -15.60387 -15.34603 -14.85556 -14.69462 -14.55949 -14.37360 -14.20870 -13.75728 -13.68716 -13.63517 -13.28591 -13.19335 -13.14408 -12.64928 -12.42829 -12.27308 -11.89451 -11.61434 -11.53730 -11.48081 -11.32290 -11.20356 -10.96205 -10.92155 -10.83541 -10.66878 -10.39880 -10.30388 -10.08434 -10.03815 -9.78054 -9.75481 -9.55681 -9.23691 -9.05704 -8.62366 -8.34612 -6.86572 -6.05545 -3.21304 1.29963 2.02358 2.43801 3.43393 3.50660 3.52842 3.53145 3.66329 4.22343 4.39109 4.59391 4.81030 4.96864 5.07631 5.10766 5.15617 5.19852 5.32575 5.37580 5.44350 5.46655 5.54599 5.56049 5.75030 5.79176 5.80428 5.84549 5.92636 5.97993 6.00470 6.13423 6.15457 6.16275 6.22317 6.32251 6.34836 6.41409 6.44018 6.57371 6.59589 6.75362 6.81531 6.82884 6.86798 6.94062 7.09929 7.16763 7.31401 7.76874 8.02744 8.47286 8.58936 9.13045 9.85960 10.30797 11.23055 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.002829 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.835766 B = 9895.229538 C =10297.170542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.033 4.033 3 C -0.139 4.139 4 C 0.144 3.856 5 N -0.297 5.297 6 N -0.464 5.464 7 H 0.443 0.557 8 C 0.100 3.900 9 C -0.281 4.281 10 C 0.590 3.410 11 O -0.541 6.541 12 N -0.718 5.718 13 C 0.166 3.834 14 H 0.082 0.918 15 C -0.142 4.142 16 C 0.149 3.851 17 N -0.596 5.596 18 C -0.345 4.345 19 H 0.056 0.944 20 C -0.024 4.024 21 N -0.917 5.917 22 Si 1.066 2.934 23 H -0.293 1.293 24 H -0.295 1.295 25 H -0.291 1.291 26 C 0.166 3.834 27 C -0.092 4.092 28 C -0.135 4.135 29 C -0.127 4.127 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.120 0.880 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.184 0.816 38 H 0.391 0.609 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.018 0.982 42 H 0.056 0.944 43 H 0.270 0.730 44 H 0.084 0.916 45 H 0.017 0.983 46 H 0.045 0.955 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.072 0.928 50 H 0.053 0.947 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 13.379 14.331 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C -0.197 4.197 4 C -0.024 4.024 5 N -0.119 5.119 6 N -0.168 5.168 7 H 0.287 0.713 8 C -0.053 4.053 9 C -0.296 4.296 10 C 0.377 3.623 11 O -0.420 6.420 12 N -0.369 5.369 13 C 0.063 3.937 14 H 0.100 0.900 15 C -0.182 4.182 16 C 0.022 3.978 17 N -0.320 5.320 18 C -0.474 4.474 19 H 0.074 0.926 20 C -0.226 4.226 21 N -0.558 5.558 22 Si 0.896 3.104 23 H -0.219 1.219 24 H -0.222 1.222 25 H -0.218 1.218 26 C 0.039 3.961 27 C -0.094 4.094 28 C -0.193 4.193 29 C -0.184 4.184 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.201 0.799 38 H 0.226 0.774 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.091 0.909 50 H 0.072 0.928 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.023 13.346 14.283 21.530 hybrid contribution -0.701 0.227 0.673 0.998 sum -9.724 13.573 14.956 22.416 Atomic orbital electron populations 1.21776 0.93929 1.02002 1.01975 1.20011 0.95958 0.95729 0.93671 1.21776 1.01172 0.94752 1.01979 1.22427 0.93691 0.92898 0.93396 1.77118 1.20066 1.14146 1.00520 1.46108 1.39700 1.21463 1.09526 0.71307 1.23139 0.96082 0.94624 0.91406 1.20432 1.12916 1.03460 0.92790 1.17239 0.77921 0.79660 0.87529 1.90697 1.58807 1.67489 1.24967 1.46141 1.51962 1.28493 1.10259 1.20943 0.93143 0.92733 0.86923 0.90020 1.22433 0.97626 0.97894 1.00280 1.20869 0.88686 0.95245 0.92955 1.44114 1.09431 1.06537 1.71872 1.19988 0.96323 0.82625 1.48471 0.92642 1.25776 0.93945 1.05563 0.97303 1.70719 1.37498 1.09979 1.37558 0.83520 0.75233 0.75247 0.76381 1.21888 1.22180 1.21759 1.20893 0.92597 0.92552 0.90033 1.21354 0.93809 0.95259 0.98992 1.21782 0.98731 0.98609 1.00195 1.21753 1.02320 0.98640 0.95736 0.92515 0.91922 0.92672 0.86232 0.92688 0.91926 0.92510 0.79930 0.77416 0.92555 0.91870 0.96382 0.92503 0.91922 0.89756 0.96507 0.93614 0.92548 0.92980 0.90939 0.92825 0.95122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.18 37.16 0.34 -1.09 16 2 C -0.03 -0.40 3.26 -91.78 -0.30 -0.70 16 3 C -0.14 -1.43 9.17 37.15 0.34 -1.09 16 4 C 0.14 1.80 5.77 -82.02 -0.47 1.33 16 5 N -0.30 -3.39 12.63 33.89 0.43 -2.96 16 6 N -0.46 -3.71 7.29 30.85 0.22 -3.48 16 7 H 0.44 1.88 8.96 -182.72 -1.64 0.24 16 8 C 0.10 0.84 11.52 -16.56 -0.19 0.65 16 9 C -0.28 -3.43 6.13 -105.06 -0.64 -4.08 16 10 C 0.59 8.66 7.78 -12.51 -0.10 8.56 16 11 O -0.54 -9.72 14.23 5.28 0.08 -9.65 16 12 N -0.72 -9.67 4.28 -54.84 -0.23 -9.90 16 13 C 0.17 2.76 1.57 -67.88 -0.11 2.66 16 14 H 0.08 1.56 7.57 -51.93 -0.39 1.16 16 15 C -0.14 -2.53 5.31 -26.61 -0.14 -2.67 16 16 C 0.15 3.14 6.52 -3.72 -0.02 3.12 16 17 N -0.60 -14.26 2.30 -172.59 -0.40 -14.65 16 18 C -0.34 -9.26 9.49 -15.06 -0.14 -9.41 16 19 H 0.06 1.52 7.94 -52.49 -0.42 1.10 16 20 C -0.02 -0.66 4.68 -17.43 -0.08 -0.74 16 21 N -0.92 -26.80 12.41 55.49 0.69 -26.11 16 22 Si 1.07 24.76 29.99 -169.99 -5.10 19.67 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.17 3.67 3.33 -3.93 -0.01 3.65 16 27 C -0.09 -1.56 0.56 -154.61 -0.09 -1.65 16 28 C -0.14 -2.00 8.31 37.16 0.31 -1.69 16 29 C -0.13 -2.04 7.82 37.16 0.29 -1.75 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.12 1.68 5.60 -51.93 -0.29 1.39 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.18 0.83 7.46 -52.49 -0.39 0.44 16 38 H 0.39 4.23 5.58 -40.82 -0.23 4.00 16 39 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 40 H 0.06 1.11 6.34 -51.93 -0.33 0.78 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 43 H 0.27 7.98 6.71 -40.82 -0.27 7.71 16 44 H 0.08 2.10 6.30 -51.93 -0.33 1.78 16 45 H 0.02 0.40 7.87 -51.93 -0.41 -0.01 16 46 H 0.04 0.57 7.36 -51.93 -0.38 0.18 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.07 1.33 5.98 -51.92 -0.31 1.02 16 50 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.03 0.38 6.58 -51.93 -0.34 0.03 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -32.60 392.59 -9.00 -41.61 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -9.59 Total: 4.46 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -1.02 Total: -4.88 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.71 Total: -57.12 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.10 Total: 19.67 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.60 -9.00 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940859572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.112 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds