Wall clock time and date at job start Tue Mar 31 2020 19:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47409 * 2 1 4 4 C 1.50696 * 109.47284 * 120.00485 * 2 1 3 5 5 N 1.30451 * 125.98596 * 300.00082 * 4 2 1 6 6 N 1.39934 * 108.89526 * 179.97438 * 5 4 2 7 7 H 0.97005 * 125.74919 * 180.02562 * 6 5 4 8 8 C 1.34263 * 108.49591 * 359.74971 * 6 5 4 9 9 C 1.38046 * 107.41188 * 0.39043 * 8 6 5 10 10 C 1.47429 * 126.41419 * 179.87071 * 9 8 6 11 11 O 1.21600 * 120.00400 * 179.69152 * 10 9 8 12 12 N 1.34783 * 119.99493 * 359.69321 * 10 9 8 13 13 C 1.46504 * 119.99600 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.46134 * 34.97219 * 13 12 10 15 15 C 1.53042 * 109.46066 * 274.99908 * 13 12 10 16 16 C 1.53187 * 109.31207 * 178.62831 * 15 13 12 17 17 N 1.46920 * 108.77436 * 54.64066 * 16 15 13 18 18 C 1.36940 * 120.63357 * 126.36916 * 17 16 15 19 19 H 1.07997 * 119.99487 * 332.50127 * 18 17 16 20 20 C 1.38809 * 120.00020 * 152.50088 * 18 17 16 21 21 N 1.31625 * 120.00314 * 335.02519 * 20 18 17 22 22 Si 1.86803 * 119.99831 * 155.01934 * 20 18 17 23 23 H 1.48499 * 109.47125 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46931 * 120.00189 * 22 20 18 25 25 H 1.48496 * 109.47273 * 240.00296 * 22 20 18 26 26 C 1.46928 * 118.73646 * 306.63846 * 17 16 15 27 27 C 1.52760 * 109.01045 * 53.31323 * 26 17 16 28 28 C 1.52999 * 109.56735 * 185.55362 * 27 26 17 29 29 C 1.52998 * 109.38392 * 65.51403 * 27 26 17 30 30 H 1.09002 * 109.47154 * 300.00027 * 1 2 3 31 31 H 1.09000 * 109.47156 * 59.99953 * 1 2 3 32 32 H 1.09003 * 109.47432 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47154 * 239.99973 * 2 1 3 34 34 H 1.09000 * 109.47204 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47323 * 300.00438 * 3 2 1 36 36 H 1.09002 * 109.46985 * 59.99869 * 3 2 1 37 37 H 1.08000 * 126.29129 * 180.24929 * 8 6 5 38 38 H 0.97002 * 120.00091 * 0.02562 * 12 10 9 39 39 H 1.09009 * 109.49443 * 58.67903 * 15 13 12 40 40 H 1.09000 * 109.52639 * 298.60280 * 15 13 12 41 41 H 1.08996 * 109.58664 * 294.84755 * 16 15 13 42 42 H 1.09003 * 109.58135 * 174.42479 * 16 15 13 43 43 H 0.96998 * 119.99686 * 354.25090 * 21 20 18 44 44 H 1.09007 * 109.58583 * 173.14684 * 26 17 16 45 45 H 1.08998 * 109.58571 * 293.57108 * 26 17 16 46 46 H 1.08993 * 109.46899 * 179.97438 * 28 27 26 47 47 H 1.09000 * 109.46931 * 299.96216 * 28 27 26 48 48 H 1.08999 * 109.47077 * 59.95980 * 28 27 26 49 49 H 1.09008 * 109.47093 * 300.14393 * 29 27 26 50 50 H 1.09000 * 109.47424 * 60.14556 * 29 27 26 51 51 H 1.09004 * 109.47048 * 180.14657 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7903 -0.3682 2.4657 6 7 2.4295 -1.2733 3.3202 7 1 2.4106 -1.2475 4.2898 8 6 3.0684 -2.1870 2.5721 9 6 2.8475 -1.8644 1.2482 10 6 3.3608 -2.5915 0.0728 11 8 3.0880 -2.2058 -1.0476 12 7 4.1325 -3.6838 0.2404 13 6 4.6422 -4.4066 -0.9276 14 1 4.8620 -3.6978 -1.7258 15 6 3.5876 -5.4057 -1.4090 16 6 4.1102 -6.1352 -2.6505 17 7 5.4115 -6.7382 -2.3319 18 6 5.6341 -8.0720 -2.5478 19 1 4.8092 -8.7685 -2.5200 20 6 6.9199 -8.5287 -2.8024 21 7 7.8179 -7.7149 -3.3160 22 14 7.3761 -10.2985 -2.4158 23 1 6.1966 -11.0014 -1.8502 24 1 7.8085 -10.9816 -3.6615 25 1 8.4855 -10.3195 -1.4290 26 6 6.4676 -5.8841 -1.7715 27 6 5.9204 -5.1562 -0.5449 28 6 6.9627 -4.1601 -0.0329 29 6 5.6058 -6.1754 0.5520 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.6503 -3.0197 2.9388 38 1 4.3498 -3.9917 1.1342 39 1 2.6697 -4.8735 -1.6592 40 1 3.3847 -6.1298 -0.6200 41 1 4.2270 -5.4253 -3.4693 42 1 3.4064 -6.9160 -2.9388 43 1 7.5604 -6.8220 -3.5941 44 1 7.3188 -6.4994 -1.4799 45 1 6.7806 -5.1533 -2.5171 46 1 6.5705 -3.6415 0.8419 47 1 7.8728 -4.6945 0.2395 48 1 7.1874 -3.4351 -0.8151 49 1 4.8640 -6.8855 0.1863 50 1 6.5164 -6.7091 0.8241 51 1 5.2128 -5.6577 1.4270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940859572.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:41 Heat of formation + Delta-G solvation = 16.684509 kcal Electronic energy + Delta-G solvation = -30450.583697 eV Core-core repulsion = 26578.405214 eV Total energy + Delta-G solvation = -3872.178483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.48926 -41.13367 -39.33202 -36.71860 -36.28014 -34.30410 -33.92447 -31.92259 -31.60233 -30.45812 -28.18741 -28.02993 -27.74482 -26.67497 -24.54395 -24.30890 -23.17329 -22.41568 -21.06391 -20.30741 -19.83988 -19.47116 -18.87036 -17.50031 -16.92252 -16.34968 -16.22618 -15.81948 -15.67952 -15.54010 -15.50693 -15.42482 -15.16785 -14.94734 -14.82971 -14.17953 -14.05785 -13.94749 -13.92883 -13.57920 -13.04921 -12.96336 -12.88043 -12.66327 -12.50041 -12.43718 -12.38710 -12.16572 -12.13276 -11.98273 -11.85879 -11.79507 -11.74305 -11.65505 -11.34960 -11.09351 -10.66641 -10.52156 -10.43359 -10.07541 -9.70569 -8.89670 -8.20500 -5.35140 0.55953 1.10974 1.61292 1.68397 1.81022 1.84513 2.29154 2.48862 2.68227 3.25028 3.42877 3.54755 3.67671 3.70144 3.93246 4.03388 4.09570 4.14186 4.26201 4.29914 4.36473 4.39033 4.45174 4.55344 4.59129 4.63925 4.78480 4.78526 4.81160 4.88444 4.94282 4.95136 4.96059 4.98980 5.05868 5.10738 5.16899 5.17387 5.26644 5.29902 5.32902 5.33061 5.42022 5.50955 5.62172 5.67340 5.89209 6.28731 6.42599 6.50830 6.73928 7.08350 7.39213 7.81675 8.26137 9.04443 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.002829 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.835766 B = 9895.229538 C =10297.170542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.039 4.039 3 C -0.132 4.132 4 C 0.130 3.870 5 N -0.315 5.315 6 N -0.446 5.446 7 H 0.461 0.539 8 C 0.135 3.865 9 C -0.319 4.319 10 C 0.591 3.409 11 O -0.583 6.583 12 N -0.703 5.703 13 C 0.180 3.820 14 H 0.053 0.947 15 C -0.126 4.126 16 C 0.146 3.854 17 N -0.610 5.610 18 C -0.345 4.345 19 H 0.050 0.950 20 C -0.074 4.074 21 N -0.944 5.944 22 Si 1.116 2.884 23 H -0.273 1.273 24 H -0.296 1.296 25 H -0.285 1.285 26 C 0.174 3.826 27 C -0.082 4.082 28 C -0.130 4.130 29 C -0.122 4.122 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.231 0.769 38 H 0.409 0.591 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.003 0.997 42 H 0.052 0.948 43 H 0.253 0.747 44 H 0.054 0.946 45 H -0.010 1.010 46 H 0.081 0.919 47 H 0.056 0.944 48 H 0.040 0.960 49 H 0.048 0.952 50 H 0.045 0.955 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.210 13.448 18.138 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.059 4.059 3 C -0.190 4.190 4 C -0.038 4.038 5 N -0.138 5.138 6 N -0.151 5.151 7 H 0.310 0.690 8 C -0.019 4.019 9 C -0.334 4.334 10 C 0.380 3.620 11 O -0.464 6.464 12 N -0.354 5.354 13 C 0.075 3.925 14 H 0.071 0.929 15 C -0.166 4.166 16 C 0.020 3.980 17 N -0.333 5.333 18 C -0.475 4.475 19 H 0.068 0.932 20 C -0.270 4.270 21 N -0.586 5.586 22 Si 0.941 3.059 23 H -0.198 1.198 24 H -0.224 1.224 25 H -0.212 1.212 26 C 0.048 3.952 27 C -0.084 4.084 28 C -0.188 4.188 29 C -0.179 4.179 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.247 0.753 38 H 0.247 0.753 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.021 0.979 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.008 0.992 46 H 0.100 0.900 47 H 0.075 0.925 48 H 0.059 0.941 49 H 0.068 0.932 50 H 0.064 0.936 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.772 13.445 18.163 24.620 hybrid contribution -0.537 0.254 -0.527 0.794 sum -10.308 13.700 17.636 24.596 Atomic orbital electron populations 1.21718 0.92975 1.01534 1.02763 1.19965 0.96800 0.96222 0.92914 1.21717 1.00442 0.94064 1.02765 1.22501 0.94117 0.93334 0.93805 1.77069 1.21011 1.15338 1.00358 1.46157 1.38236 1.20368 1.10378 0.69017 1.23705 0.94032 0.94470 0.89714 1.20279 1.15274 1.04392 0.93447 1.17592 0.77217 0.79408 0.87812 1.90691 1.60239 1.68529 1.26928 1.45780 1.51715 1.28029 1.09920 1.20497 0.92593 0.91857 0.87555 0.92895 1.22223 0.97754 0.97938 0.98716 1.20943 0.87666 0.95020 0.94407 1.44306 1.10489 1.06120 1.72428 1.20201 0.96179 0.83912 1.47210 0.93228 1.27089 0.94257 1.08597 0.97094 1.70848 1.38044 1.09667 1.40052 0.82850 0.75751 0.71148 0.76164 1.19794 1.22360 1.21165 1.20735 0.91488 0.91456 0.91508 1.21154 0.94416 0.95800 0.97018 1.21745 0.98111 0.97826 1.01105 1.21692 1.01507 0.98011 0.96669 0.92016 0.90773 0.93715 0.88895 0.93699 0.90781 0.92010 0.75261 0.75299 0.92390 0.90826 0.97873 0.92924 0.93742 0.92797 0.99238 0.90026 0.92484 0.94110 0.93247 0.93593 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.18 71.98 0.66 -2.00 16 2 C -0.04 -0.91 3.26 -11.54 -0.04 -0.95 16 3 C -0.13 -2.66 9.17 71.98 0.66 -2.00 16 4 C 0.13 3.07 5.77 43.51 0.25 3.33 16 5 N -0.32 -6.44 12.63 -46.68 -0.59 -7.03 16 6 N -0.45 -5.28 7.29 -56.31 -0.41 -5.69 16 7 H 0.46 1.75 8.96 -213.42 -1.91 -0.16 16 8 C 0.14 1.62 11.52 84.28 0.97 2.59 16 9 C -0.32 -7.02 6.13 -20.15 -0.12 -7.15 16 10 C 0.59 16.53 7.78 86.66 0.67 17.20 16 11 O -0.58 -21.29 14.23 -4.03 -0.06 -21.34 16 12 N -0.70 -17.10 4.28 -445.66 -1.91 -19.00 16 13 C 0.18 5.87 1.57 45.02 0.07 5.94 16 14 H 0.05 2.07 7.57 -2.39 -0.02 2.05 16 15 C -0.13 -4.46 5.31 30.67 0.16 -4.29 16 16 C 0.15 6.35 6.52 86.36 0.56 6.91 16 17 N -0.61 -30.09 2.30 -699.94 -1.61 -31.70 16 18 C -0.35 -18.93 9.49 84.03 0.80 -18.13 16 19 H 0.05 2.74 7.94 -2.91 -0.02 2.72 16 20 C -0.07 -4.15 4.68 84.86 0.40 -3.75 16 21 N -0.94 -57.08 12.41 21.65 0.27 -56.81 16 22 Si 1.12 50.23 29.99 68.60 2.06 52.29 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 24 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 26 C 0.17 7.99 3.33 86.22 0.29 8.28 16 27 C -0.08 -2.71 0.56 -52.25 -0.03 -2.74 16 28 C -0.13 -3.61 8.31 71.98 0.60 -3.01 16 29 C -0.12 -3.57 7.82 71.98 0.56 -3.01 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 2.72 5.60 -2.39 -0.01 2.71 16 34 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.23 0.42 7.46 -2.91 -0.02 0.40 16 38 H 0.41 6.82 5.58 -92.71 -0.52 6.31 16 39 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.07 2.47 6.34 -2.39 -0.02 2.46 16 41 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 43 H 0.25 15.76 6.71 -92.71 -0.62 15.14 16 44 H 0.05 2.79 6.30 -2.38 -0.02 2.78 16 45 H -0.01 -0.52 7.87 -2.39 -0.02 -0.54 16 46 H 0.08 1.68 7.36 -2.39 -0.02 1.66 16 47 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.05 1.70 5.98 -2.38 -0.01 1.69 16 50 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.08 1.54 6.58 -2.38 -0.02 1.52 16 Total: -1.00 -75.99 392.59 2.88 -73.11 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -1.34 Total: 18.96 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 6.47 Total: -2.79 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -4.25 Total: -120.22 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.06 Total: -21.34 kcal Atomic # 14 Polarization: 50.23 SS G_CDS: 2.06 Total: 52.29 kcal Total: -75.99 2.88 -73.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940859572.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.790 kcal (2) G-P(sol) polarization free energy of solvation -75.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds