Wall clock time and date at job start Tue Mar 31 2020 19:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47534 * 2 1 4 4 C 1.50696 * 109.46907 * 120.00624 * 2 1 3 5 5 N 1.30453 * 125.98441 * 300.13689 * 4 2 1 6 6 N 1.39940 * 108.89419 * 180.26363 * 5 4 2 7 7 H 0.97003 * 125.75140 * 179.77050 * 6 5 4 8 8 C 1.34261 * 108.49278 * 359.75412 * 6 5 4 9 9 C 1.38041 * 107.41777 * 359.97438 * 8 6 5 10 10 C 1.47426 * 126.41962 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00587 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99694 * 0.02678 * 10 9 8 13 13 C 1.46500 * 120.00252 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.44766 * 325.03397 * 13 12 10 15 15 C 1.53044 * 109.45922 * 84.99503 * 13 12 10 16 16 C 1.53194 * 109.30939 * 181.38808 * 15 13 12 17 17 N 1.46928 * 108.77571 * 305.36478 * 16 15 13 18 18 C 1.36940 * 120.63047 * 233.59041 * 17 16 15 19 19 H 1.08001 * 120.00074 * 152.41655 * 18 17 16 20 20 C 1.38810 * 119.99568 * 332.41191 * 18 17 16 21 21 N 1.31612 * 120.00342 * 334.89674 * 20 18 17 22 22 Si 1.86802 * 119.99639 * 154.90100 * 20 18 17 23 23 H 1.48502 * 109.47243 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47133 * 119.99630 * 22 20 18 25 25 H 1.48491 * 109.47174 * 239.99763 * 22 20 18 26 26 C 1.46920 * 118.73725 * 53.86205 * 17 16 15 27 27 C 1.53036 * 109.46169 * 205.06642 * 13 12 10 28 28 C 1.53004 * 109.49653 * 298.56383 * 27 13 12 29 29 C 1.52996 * 109.49790 * 58.65718 * 27 13 12 30 30 H 1.09001 * 109.47430 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47163 * 300.00318 * 1 2 3 32 32 H 1.09004 * 109.46888 * 59.99872 * 1 2 3 33 33 H 1.09009 * 109.46911 * 239.99872 * 2 1 3 34 34 H 1.08995 * 109.47481 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47138 * 299.99975 * 3 2 1 36 36 H 1.09001 * 109.47156 * 59.99677 * 3 2 1 37 37 H 1.07998 * 126.29187 * 179.97438 * 8 6 5 38 38 H 0.97001 * 119.99651 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.49812 * 61.43642 * 15 13 12 40 40 H 1.08997 * 109.49757 * 301.33683 * 15 13 12 41 41 H 1.09002 * 109.58109 * 185.58012 * 16 15 13 42 42 H 1.08999 * 109.70537 * 65.22289 * 16 15 13 43 43 H 0.97002 * 120.00390 * 354.25820 * 21 20 18 44 44 H 1.09002 * 109.58833 * 65.92731 * 26 17 16 45 45 H 1.09006 * 109.58837 * 186.34998 * 26 17 16 46 46 H 1.09002 * 109.46977 * 59.99819 * 28 27 13 47 47 H 1.08994 * 109.46971 * 179.97438 * 28 27 13 48 48 H 1.09003 * 109.47494 * 299.99957 * 28 27 13 49 49 H 1.09001 * 109.47099 * 60.00635 * 29 27 13 50 50 H 1.08999 * 109.47332 * 180.02562 * 29 27 13 51 51 H 1.08997 * 109.47571 * 300.00185 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7881 -0.3697 2.4657 6 7 2.4335 -1.2704 3.3203 7 1 2.4174 -1.2426 4.2898 8 6 3.0784 -2.1798 2.5722 9 6 2.8474 -1.8645 1.2483 10 6 3.3609 -2.5914 0.0729 11 8 3.0835 -2.2090 -1.0475 12 7 4.1378 -3.6799 0.2404 13 6 4.6486 -4.4020 -0.9275 14 1 3.9045 -4.3771 -1.7236 15 6 5.9383 -3.7371 -1.4142 16 6 6.4506 -4.4736 -2.6559 17 7 6.5913 -5.9005 -2.3350 18 6 7.7760 -6.5514 -2.5541 19 1 8.0412 -7.4076 -1.9516 20 6 8.6359 -6.1108 -3.5507 21 7 8.1628 -5.4378 -4.5780 22 14 10.4647 -6.4733 -3.4338 23 1 10.7390 -7.2398 -2.1919 24 1 10.8871 -7.2728 -4.6118 25 1 11.2216 -5.1961 -3.4052 26 6 5.4349 -6.6171 -1.7802 27 6 4.9355 -5.8553 -0.5431 28 6 6.0054 -5.8926 0.5501 29 6 3.6529 -6.5094 -0.0258 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.6693 -3.0062 2.9388 38 1 4.3594 -3.9848 1.1342 39 1 6.6910 -3.7836 -0.6272 40 1 5.7381 -2.6956 -1.6657 41 1 7.4191 -4.0675 -2.9479 42 1 5.7413 -4.3514 -3.4745 43 1 7.2054 -5.3213 -4.6822 44 1 4.6425 -6.6659 -2.5271 45 1 5.7329 -7.6258 -1.4942 46 1 5.6496 -5.3489 1.4253 47 1 6.2090 -6.9278 0.8239 48 1 6.9192 -5.4277 0.1803 49 1 2.8918 -6.4837 -0.8057 50 1 3.8578 -7.5443 0.2484 51 1 3.2952 -5.9663 0.8490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940859574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:49 Heat of formation + Delta-G solvation = 37.887693 kcal Electronic energy + Delta-G solvation = -30417.974792 eV Core-core repulsion = 26546.715748 eV Total energy + Delta-G solvation = -3871.259044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.66224 -39.78188 -37.94861 -35.74968 -34.78781 -33.17181 -31.51921 -30.97248 -30.64056 -29.40456 -27.19377 -26.97605 -25.83416 -25.01209 -23.54357 -23.19681 -21.91905 -20.62791 -19.97566 -19.36092 -18.88028 -17.79166 -17.34653 -16.41766 -15.60213 -15.33681 -14.83648 -14.67678 -14.40504 -14.35276 -14.24885 -13.94035 -13.71774 -13.55870 -13.41124 -13.17221 -13.12452 -12.76997 -12.32638 -12.25096 -12.00204 -11.60006 -11.57799 -11.32602 -11.30162 -11.19943 -10.96145 -10.89921 -10.87265 -10.67534 -10.55217 -10.30763 -10.11145 -9.93682 -9.83882 -9.74362 -9.54262 -9.24448 -9.04544 -8.60576 -8.31968 -6.85594 -6.03825 -3.20219 1.30704 2.03632 2.44507 3.43514 3.51887 3.54625 3.55125 3.67539 4.23325 4.39601 4.60449 4.82199 4.96333 5.03868 5.12903 5.16101 5.19985 5.27479 5.34864 5.39107 5.47530 5.53908 5.58348 5.76406 5.77148 5.81349 5.82829 5.88430 5.95071 6.01703 6.07989 6.16942 6.17792 6.19629 6.27891 6.33538 6.39497 6.44533 6.48608 6.58693 6.71118 6.74220 6.82582 6.87065 6.93548 7.12485 7.24990 7.32327 7.77298 8.03083 8.48884 8.60341 9.14155 9.87306 10.32008 11.24721 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.002964 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.341451 B = 9442.886674 C = 9993.339921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.034 4.034 3 C -0.139 4.139 4 C 0.145 3.855 5 N -0.297 5.297 6 N -0.464 5.464 7 H 0.442 0.558 8 C 0.100 3.900 9 C -0.280 4.280 10 C 0.589 3.411 11 O -0.539 6.539 12 N -0.719 5.719 13 C 0.166 3.834 14 H 0.082 0.918 15 C -0.144 4.144 16 C 0.153 3.847 17 N -0.596 5.596 18 C -0.348 4.348 19 H 0.056 0.944 20 C -0.024 4.024 21 N -0.916 5.916 22 Si 1.067 2.933 23 H -0.293 1.293 24 H -0.295 1.295 25 H -0.291 1.291 26 C 0.162 3.838 27 C -0.089 4.089 28 C -0.129 4.129 29 C -0.136 4.136 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.120 0.880 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.183 0.817 38 H 0.390 0.610 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.018 0.982 43 H 0.270 0.730 44 H 0.018 0.982 45 H 0.058 0.942 46 H 0.032 0.968 47 H 0.049 0.951 48 H 0.075 0.925 49 H 0.052 0.948 50 H 0.053 0.947 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.581 6.849 17.001 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.054 4.054 3 C -0.197 4.197 4 C -0.024 4.024 5 N -0.118 5.118 6 N -0.168 5.168 7 H 0.287 0.713 8 C -0.053 4.053 9 C -0.295 4.295 10 C 0.376 3.624 11 O -0.417 6.417 12 N -0.369 5.369 13 C 0.063 3.937 14 H 0.100 0.900 15 C -0.184 4.184 16 C 0.027 3.973 17 N -0.319 5.319 18 C -0.477 4.477 19 H 0.074 0.926 20 C -0.226 4.226 21 N -0.556 5.556 22 Si 0.897 3.103 23 H -0.219 1.219 24 H -0.222 1.222 25 H -0.217 1.217 26 C 0.035 3.965 27 C -0.092 4.092 28 C -0.187 4.187 29 C -0.194 4.194 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.200 0.800 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.036 0.964 43 H 0.082 0.918 44 H 0.036 0.964 45 H 0.077 0.923 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.862 8.181 16.218 21.695 hybrid contribution -0.891 -1.178 1.463 2.079 sum -12.753 7.003 17.681 22.898 Atomic orbital electron populations 1.21775 0.93955 1.01937 1.01981 1.20016 0.95930 0.95782 0.93670 1.21776 1.01256 0.94702 1.01973 1.22435 0.93734 0.92810 0.93397 1.77123 1.20020 1.14176 1.00521 1.46106 1.39326 1.21877 1.09514 0.71327 1.23121 0.96068 0.94716 0.91405 1.20435 1.12798 1.03520 0.92781 1.17234 0.77786 0.79831 0.87541 1.90707 1.59288 1.66784 1.24951 1.46134 1.51573 1.29067 1.10172 1.20942 0.95891 0.90058 0.86834 0.90031 1.22497 0.96180 0.99040 1.00688 1.20923 1.00070 0.84106 0.92235 1.44137 1.08914 1.04185 1.74652 1.19971 0.96228 1.15818 1.15673 0.92621 1.25796 1.05602 0.99710 0.91523 1.70706 1.16269 1.42842 1.25779 0.83505 0.75758 0.76027 0.74964 1.21911 1.22206 1.21743 1.20980 0.89903 0.94482 0.91153 1.21425 0.95014 0.94306 0.98431 1.21766 0.99759 1.01203 0.95931 1.21795 0.97097 1.00094 1.00387 0.92725 0.92522 0.91916 0.86207 0.92624 0.91887 0.92535 0.79971 0.77514 0.91956 0.92603 0.90074 0.96367 0.91838 0.96442 0.92310 0.94860 0.93146 0.90576 0.92920 0.92772 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.18 37.16 0.34 -1.11 16 2 C -0.03 -0.41 3.26 -91.78 -0.30 -0.71 16 3 C -0.14 -1.49 9.18 37.15 0.34 -1.15 16 4 C 0.14 1.83 5.77 -82.02 -0.47 1.36 16 5 N -0.30 -3.43 12.63 33.90 0.43 -3.00 16 6 N -0.46 -3.73 7.29 30.85 0.22 -3.51 16 7 H 0.44 1.88 8.96 -182.72 -1.64 0.24 16 8 C 0.10 0.83 11.52 -16.56 -0.19 0.64 16 9 C -0.28 -3.46 6.13 -105.07 -0.64 -4.11 16 10 C 0.59 8.78 7.78 -12.52 -0.10 8.68 16 11 O -0.54 -9.91 14.22 5.28 0.08 -9.83 16 12 N -0.72 -9.67 4.28 -54.84 -0.23 -9.91 16 13 C 0.17 2.76 1.57 -67.89 -0.11 2.66 16 14 H 0.08 1.55 7.57 -51.93 -0.39 1.16 16 15 C -0.14 -2.75 5.31 -26.61 -0.14 -2.89 16 16 C 0.15 3.56 4.69 -3.71 -0.02 3.55 16 17 N -0.60 -14.24 2.28 -172.05 -0.39 -14.63 16 18 C -0.35 -9.34 9.49 -15.06 -0.14 -9.49 16 19 H 0.06 1.51 7.94 -52.49 -0.42 1.09 16 20 C -0.02 -0.67 4.68 -17.43 -0.08 -0.75 16 21 N -0.92 -27.21 12.40 55.49 0.69 -26.53 16 22 Si 1.07 25.01 29.99 -169.99 -5.10 19.91 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.16 3.24 5.24 -3.49 -0.02 3.22 16 27 C -0.09 -1.41 0.56 -154.17 -0.09 -1.49 16 28 C -0.13 -1.92 7.84 37.16 0.29 -1.63 16 29 C -0.14 -1.77 8.31 37.16 0.31 -1.46 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.12 1.73 5.61 -51.92 -0.29 1.44 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.18 0.81 7.46 -52.49 -0.39 0.42 16 38 H 0.39 4.13 5.59 -40.82 -0.23 3.91 16 39 H 0.06 1.18 6.34 -51.93 -0.33 0.85 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 2.13 6.29 -51.93 -0.33 1.80 16 42 H 0.02 0.45 7.86 -51.93 -0.41 0.04 16 43 H 0.27 8.14 6.71 -40.82 -0.27 7.86 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 46 H 0.03 0.38 6.58 -51.93 -0.34 0.04 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.08 1.37 5.97 -51.93 -0.31 1.06 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.05 0.53 7.36 -51.93 -0.38 0.15 16 LS Contribution 392.65 15.07 5.92 5.92 Total: -1.00 -33.00 392.65 -9.00 -41.99 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -9.59 Total: 4.26 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.02 Total: -4.68 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.71 Total: -57.56 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.10 Total: 19.91 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.00 -9.00 -41.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940859574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.881 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds