Wall clock time and date at job start Tue Mar 31 2020 19:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47534 * 2 1 4 4 C 1.50696 * 109.46907 * 120.00624 * 2 1 3 5 5 N 1.30453 * 125.98441 * 300.13689 * 4 2 1 6 6 N 1.39940 * 108.89419 * 180.26363 * 5 4 2 7 7 H 0.97003 * 125.75140 * 179.77050 * 6 5 4 8 8 C 1.34261 * 108.49278 * 359.75412 * 6 5 4 9 9 C 1.38041 * 107.41777 * 359.97438 * 8 6 5 10 10 C 1.47426 * 126.41962 * 179.97438 * 9 8 6 11 11 O 1.21597 * 120.00587 * 180.02562 * 10 9 8 12 12 N 1.34782 * 119.99694 * 0.02678 * 10 9 8 13 13 C 1.46500 * 120.00252 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.44766 * 325.03397 * 13 12 10 15 15 C 1.53044 * 109.45922 * 84.99503 * 13 12 10 16 16 C 1.53194 * 109.30939 * 181.38808 * 15 13 12 17 17 N 1.46928 * 108.77571 * 305.36478 * 16 15 13 18 18 C 1.36940 * 120.63047 * 233.59041 * 17 16 15 19 19 H 1.08001 * 120.00074 * 152.41655 * 18 17 16 20 20 C 1.38810 * 119.99568 * 332.41191 * 18 17 16 21 21 N 1.31612 * 120.00342 * 334.89674 * 20 18 17 22 22 Si 1.86802 * 119.99639 * 154.90100 * 20 18 17 23 23 H 1.48502 * 109.47243 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47133 * 119.99630 * 22 20 18 25 25 H 1.48491 * 109.47174 * 239.99763 * 22 20 18 26 26 C 1.46920 * 118.73725 * 53.86205 * 17 16 15 27 27 C 1.53036 * 109.46169 * 205.06642 * 13 12 10 28 28 C 1.53004 * 109.49653 * 298.56383 * 27 13 12 29 29 C 1.52996 * 109.49790 * 58.65718 * 27 13 12 30 30 H 1.09001 * 109.47430 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47163 * 300.00318 * 1 2 3 32 32 H 1.09004 * 109.46888 * 59.99872 * 1 2 3 33 33 H 1.09009 * 109.46911 * 239.99872 * 2 1 3 34 34 H 1.08995 * 109.47481 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47138 * 299.99975 * 3 2 1 36 36 H 1.09001 * 109.47156 * 59.99677 * 3 2 1 37 37 H 1.07998 * 126.29187 * 179.97438 * 8 6 5 38 38 H 0.97001 * 119.99651 * 359.97438 * 12 10 9 39 39 H 1.08998 * 109.49812 * 61.43642 * 15 13 12 40 40 H 1.08997 * 109.49757 * 301.33683 * 15 13 12 41 41 H 1.09002 * 109.58109 * 185.58012 * 16 15 13 42 42 H 1.08999 * 109.70537 * 65.22289 * 16 15 13 43 43 H 0.97002 * 120.00390 * 354.25820 * 21 20 18 44 44 H 1.09002 * 109.58833 * 65.92731 * 26 17 16 45 45 H 1.09006 * 109.58837 * 186.34998 * 26 17 16 46 46 H 1.09002 * 109.46977 * 59.99819 * 28 27 13 47 47 H 1.08994 * 109.46971 * 179.97438 * 28 27 13 48 48 H 1.09003 * 109.47494 * 299.99957 * 28 27 13 49 49 H 1.09001 * 109.47099 * 60.00635 * 29 27 13 50 50 H 1.08999 * 109.47332 * 180.02562 * 29 27 13 51 51 H 1.08997 * 109.47571 * 300.00185 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7881 -0.3697 2.4657 6 7 2.4335 -1.2704 3.3203 7 1 2.4174 -1.2426 4.2898 8 6 3.0784 -2.1798 2.5722 9 6 2.8474 -1.8645 1.2483 10 6 3.3609 -2.5914 0.0729 11 8 3.0835 -2.2090 -1.0475 12 7 4.1378 -3.6799 0.2404 13 6 4.6486 -4.4020 -0.9275 14 1 3.9045 -4.3771 -1.7236 15 6 5.9383 -3.7371 -1.4142 16 6 6.4506 -4.4736 -2.6559 17 7 6.5913 -5.9005 -2.3350 18 6 7.7760 -6.5514 -2.5541 19 1 8.0412 -7.4076 -1.9516 20 6 8.6359 -6.1108 -3.5507 21 7 8.1628 -5.4378 -4.5780 22 14 10.4647 -6.4733 -3.4338 23 1 10.7390 -7.2398 -2.1919 24 1 10.8871 -7.2728 -4.6118 25 1 11.2216 -5.1961 -3.4052 26 6 5.4349 -6.6171 -1.7802 27 6 4.9355 -5.8553 -0.5431 28 6 6.0054 -5.8926 0.5501 29 6 3.6529 -6.5094 -0.0258 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.6693 -3.0062 2.9388 38 1 4.3594 -3.9848 1.1342 39 1 6.6910 -3.7836 -0.6272 40 1 5.7381 -2.6956 -1.6657 41 1 7.4191 -4.0675 -2.9479 42 1 5.7413 -4.3514 -3.4745 43 1 7.2054 -5.3213 -4.6822 44 1 4.6425 -6.6659 -2.5271 45 1 5.7329 -7.6258 -1.4942 46 1 5.6496 -5.3489 1.4253 47 1 6.2090 -6.9278 0.8239 48 1 6.9192 -5.4277 0.1803 49 1 2.8918 -6.4837 -0.8057 50 1 3.8578 -7.5443 0.2484 51 1 3.2952 -5.9663 0.8490 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940859574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:47 Heat of formation + Delta-G solvation = 16.423054 kcal Electronic energy + Delta-G solvation = -30418.905568 eV Core-core repulsion = 26546.715748 eV Total energy + Delta-G solvation = -3872.189820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.49386 -41.11144 -39.31342 -36.75805 -36.37337 -34.52930 -33.20384 -32.14398 -31.68711 -30.75562 -28.15002 -28.03940 -27.32009 -26.81026 -24.63892 -24.32251 -23.21855 -22.37372 -21.07998 -20.31253 -19.83799 -19.43618 -18.88843 -17.49772 -16.92672 -16.34030 -16.08438 -15.89858 -15.70088 -15.59287 -15.52572 -15.41978 -15.26327 -14.91636 -14.88251 -14.23208 -14.06209 -13.95112 -13.88240 -13.50675 -13.05721 -12.87590 -12.74501 -12.65909 -12.51461 -12.45128 -12.37482 -12.30348 -12.17568 -12.00743 -11.86069 -11.80616 -11.73076 -11.57898 -11.38883 -11.12594 -10.67437 -10.52526 -10.42519 -10.08324 -9.71259 -8.89758 -8.20598 -5.35465 0.55614 1.10145 1.60432 1.68354 1.80698 1.83524 2.28470 2.48451 2.68500 3.25569 3.42200 3.54575 3.67137 3.69571 3.92722 4.01094 4.08724 4.13421 4.25265 4.31505 4.36728 4.39476 4.45334 4.55877 4.58722 4.63086 4.77608 4.78231 4.81463 4.89702 4.93237 4.94306 4.97323 4.99121 5.08288 5.10030 5.17704 5.19080 5.26022 5.28710 5.32004 5.33458 5.40428 5.50276 5.61776 5.68610 5.89376 6.28669 6.41231 6.50322 6.73614 7.07734 7.39422 7.81055 8.26895 9.04543 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017883 B = 0.002964 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.341451 B = 9442.886674 C = 9993.339921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.039 4.039 3 C -0.133 4.133 4 C 0.130 3.870 5 N -0.315 5.315 6 N -0.445 5.445 7 H 0.462 0.538 8 C 0.137 3.863 9 C -0.319 4.319 10 C 0.589 3.411 11 O -0.584 6.584 12 N -0.702 5.702 13 C 0.180 3.820 14 H 0.053 0.947 15 C -0.128 4.128 16 C 0.163 3.837 17 N -0.608 5.608 18 C -0.343 4.343 19 H 0.057 0.943 20 C -0.081 4.081 21 N -0.948 5.948 22 Si 1.117 2.883 23 H -0.268 1.268 24 H -0.295 1.295 25 H -0.291 1.291 26 C 0.156 3.844 27 C -0.077 4.077 28 C -0.125 4.125 29 C -0.129 4.129 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.233 0.767 38 H 0.410 0.590 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.045 0.955 42 H -0.009 1.009 43 H 0.252 0.748 44 H 0.004 0.996 45 H 0.059 0.941 46 H 0.076 0.924 47 H 0.057 0.943 48 H 0.043 0.957 49 H 0.042 0.958 50 H 0.068 0.932 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.935 6.161 21.449 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.060 4.060 3 C -0.190 4.190 4 C -0.038 4.038 5 N -0.137 5.137 6 N -0.151 5.151 7 H 0.310 0.690 8 C -0.018 4.018 9 C -0.334 4.334 10 C 0.378 3.622 11 O -0.465 6.465 12 N -0.354 5.354 13 C 0.075 3.925 14 H 0.071 0.929 15 C -0.168 4.168 16 C 0.037 3.963 17 N -0.332 5.332 18 C -0.473 4.473 19 H 0.075 0.925 20 C -0.276 4.276 21 N -0.590 5.590 22 Si 0.942 3.058 23 H -0.193 1.193 24 H -0.223 1.223 25 H -0.218 1.218 26 C 0.030 3.970 27 C -0.079 4.079 28 C -0.182 4.182 29 C -0.187 4.187 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.249 0.751 38 H 0.248 0.752 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.009 0.991 43 H 0.062 0.938 44 H 0.022 0.978 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.087 0.913 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.253 7.487 20.765 25.246 hybrid contribution -0.847 -0.978 0.124 1.300 sum -13.100 6.509 20.889 25.502 Atomic orbital electron populations 1.21711 0.92820 1.01594 1.02766 1.19963 0.96930 0.96145 0.92934 1.21720 1.00360 0.94172 1.02791 1.22488 0.94218 0.93284 0.93796 1.77071 1.20975 1.15375 1.00313 1.46153 1.37828 1.20740 1.10378 0.68980 1.23700 0.93962 0.94520 0.89611 1.20276 1.15215 1.04474 0.93475 1.17630 0.77148 0.79600 0.87813 1.90701 1.60856 1.67909 1.27062 1.45760 1.51152 1.28557 1.09920 1.20507 0.93559 0.90907 0.87526 0.92921 1.22268 0.97791 0.97986 0.98778 1.20660 0.97580 0.84624 0.93479 1.44304 1.09575 1.04480 1.74833 1.20233 0.97097 1.15383 1.14556 0.92518 1.27155 1.09433 0.99843 0.91206 1.70840 1.14957 1.45585 1.27642 0.82834 0.71098 0.76002 0.75819 1.19292 1.22251 1.21809 1.21173 0.88184 0.94977 0.92632 1.21246 0.97061 0.92860 0.96744 1.21714 0.97764 1.02065 0.96642 1.21749 0.94827 1.01071 1.01062 0.93585 0.91935 0.90847 0.89058 0.93891 0.90811 0.91896 0.75120 0.75218 0.91084 0.93574 0.93654 0.99054 0.93800 0.97827 0.92213 0.90552 0.92439 0.93832 0.93886 0.91304 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.18 71.98 0.66 -2.05 16 2 C -0.04 -0.97 3.26 -11.54 -0.04 -1.01 16 3 C -0.13 -2.85 9.18 71.98 0.66 -2.19 16 4 C 0.13 3.15 5.77 43.51 0.25 3.40 16 5 N -0.32 -6.54 12.63 -46.67 -0.59 -7.13 16 6 N -0.45 -5.31 7.29 -56.32 -0.41 -5.72 16 7 H 0.46 1.72 8.96 -213.42 -1.91 -0.19 16 8 C 0.14 1.64 11.52 84.27 0.97 2.61 16 9 C -0.32 -7.20 6.13 -20.15 -0.12 -7.33 16 10 C 0.59 17.00 7.78 86.66 0.67 17.68 16 11 O -0.58 -22.26 14.22 -4.02 -0.06 -22.32 16 12 N -0.70 -17.24 4.28 -445.68 -1.91 -19.14 16 13 C 0.18 5.91 1.57 45.02 0.07 5.98 16 14 H 0.05 2.07 7.57 -2.39 -0.02 2.05 16 15 C -0.13 -5.03 5.31 30.67 0.16 -4.86 16 16 C 0.16 8.06 4.69 86.36 0.41 8.47 16 17 N -0.61 -29.97 2.28 -698.25 -1.59 -31.56 16 18 C -0.34 -18.75 9.49 84.03 0.80 -17.95 16 19 H 0.06 3.05 7.94 -2.91 -0.02 3.03 16 20 C -0.08 -4.58 4.68 84.86 0.40 -4.19 16 21 N -0.95 -58.96 12.40 21.65 0.27 -58.70 16 22 Si 1.12 51.05 29.99 68.60 2.06 53.10 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 26 C 0.16 6.28 5.24 86.51 0.45 6.74 16 27 C -0.08 -2.28 0.56 -51.96 -0.03 -2.31 16 28 C -0.12 -3.27 7.84 71.98 0.56 -2.71 16 29 C -0.13 -2.92 8.31 71.98 0.60 -2.33 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.09 2.80 5.61 -2.38 -0.01 2.79 16 34 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.23 0.35 7.46 -2.91 -0.02 0.33 16 38 H 0.41 6.67 5.59 -92.71 -0.52 6.15 16 39 H 0.07 2.67 6.34 -2.39 -0.02 2.65 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.04 2.54 6.29 -2.39 -0.02 2.52 16 42 H -0.01 -0.46 7.86 -2.39 -0.02 -0.47 16 43 H 0.25 16.18 6.71 -92.71 -0.62 15.56 16 44 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.06 2.36 7.93 -2.38 -0.02 2.35 16 46 H 0.08 1.34 6.58 -2.39 -0.02 1.32 16 47 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.04 1.45 5.97 -2.39 -0.01 1.44 16 49 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.08 1.32 7.36 -2.39 -0.02 1.30 16 Total: -1.00 -78.34 392.65 2.91 -75.43 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -1.34 Total: 18.08 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.48 Total: -2.04 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -4.23 Total: -122.26 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.06 Total: -22.32 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 2.06 Total: 53.10 kcal Total: -78.34 2.91 -75.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940859574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.855 kcal (2) G-P(sol) polarization free energy of solvation -78.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds