Wall clock time and date at job start Tue Mar 31 2020 18:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.46998 * 2 1 4 4 C 1.38042 * 126.29359 * 270.00434 * 3 2 1 5 5 C 1.47430 * 126.41405 * 0.02562 * 4 3 2 6 6 O 1.21599 * 119.99708 * 359.71088 * 5 4 3 7 7 N 1.34778 * 119.99791 * 179.71594 * 5 4 3 8 8 C 1.46504 * 119.99703 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.45712 * 34.97107 * 8 7 5 10 10 C 1.53042 * 109.45893 * 275.00076 * 8 7 5 11 11 C 1.53191 * 109.30934 * 178.62923 * 10 8 7 12 12 N 1.46933 * 108.78000 * 54.63332 * 11 10 8 13 13 C 1.36934 * 120.63168 * 126.36332 * 12 11 10 14 14 H 1.08001 * 120.00050 * 332.51150 * 13 12 11 15 15 C 1.38809 * 119.99751 * 152.50359 * 13 12 11 16 16 N 1.31614 * 120.00350 * 335.03508 * 15 13 12 17 17 Si 1.86804 * 119.99809 * 155.03104 * 15 13 12 18 18 H 1.48500 * 109.46888 * 60.00458 * 17 15 13 19 19 H 1.48503 * 109.46987 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47223 * 300.00100 * 17 15 13 21 21 C 1.46928 * 118.73761 * 306.64597 * 12 11 10 22 22 C 1.52768 * 109.00701 * 53.30366 * 21 12 11 23 23 C 1.52996 * 109.56311 * 185.55450 * 22 21 12 24 24 C 1.52998 * 109.38550 * 65.51708 * 22 21 12 25 25 C 1.41297 * 107.17174 * 179.75997 * 4 3 2 26 26 N 1.30453 * 108.02128 * 0.23691 * 25 4 3 27 27 N 1.34265 * 126.28999 * 90.17628 * 3 2 1 28 28 C 1.46499 * 125.75370 * 359.96481 * 27 3 2 29 29 H 1.08998 * 109.47019 * 300.00009 * 1 2 3 30 30 H 1.08998 * 109.46775 * 60.00137 * 1 2 3 31 31 H 1.09001 * 109.47027 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47019 * 239.99991 * 2 1 3 33 33 H 1.08989 * 109.47072 * 120.00389 * 2 1 3 34 34 H 0.97000 * 120.00458 * 359.97438 * 7 5 4 35 35 H 1.08992 * 109.49955 * 58.67978 * 10 8 7 36 36 H 1.09002 * 109.52699 * 298.59022 * 10 8 7 37 37 H 1.09001 * 109.59242 * 294.84995 * 11 10 8 38 38 H 1.09004 * 109.58982 * 174.41897 * 11 10 8 39 39 H 0.97008 * 120.00026 * 354.25254 * 16 15 13 40 40 H 1.08992 * 109.58881 * 173.13939 * 21 12 11 41 41 H 1.08996 * 109.58116 * 293.56697 * 21 12 11 42 42 H 1.09002 * 109.47461 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47181 * 299.96595 * 23 22 21 44 44 H 1.08999 * 109.47728 * 59.96496 * 23 22 21 45 45 H 1.09005 * 109.47334 * 300.14101 * 24 22 21 46 46 H 1.09003 * 109.46960 * 60.14126 * 24 22 21 47 47 H 1.08996 * 109.47186 * 180.14140 * 24 22 21 48 48 H 1.07994 * 125.98736 * 180.24365 * 25 4 3 49 49 H 1.08994 * 109.46988 * 270.30100 * 28 27 3 50 50 H 1.08998 * 109.47019 * 30.30477 * 28 27 3 51 51 H 1.09000 * 109.47243 * 150.30461 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3046 2.1912 -1.1126 5 6 2.1580 1.7782 -2.5203 6 8 1.7671 0.6583 -2.7877 7 7 2.4572 2.6420 -3.5106 8 6 2.3120 2.2315 -4.9094 9 1 1.4556 1.5639 -5.0049 10 6 3.5795 1.5024 -5.3610 11 6 3.4106 1.0447 -6.8131 12 7 3.0575 2.2083 -7.6378 13 6 3.7859 2.5185 -8.7551 14 1 4.8267 2.2367 -8.8166 15 6 3.1866 3.1951 -9.8086 16 7 1.8848 3.1164 -9.9857 17 14 4.2278 4.2174 -10.9749 18 1 5.2333 3.3458 -11.6341 19 1 3.3550 4.8345 -12.0059 20 1 4.9225 5.2852 -10.2117 21 6 1.9117 3.0364 -7.2374 22 6 2.0941 3.4686 -5.7836 23 6 0.8451 4.2147 -5.3103 24 6 3.3107 4.3902 -5.6765 25 6 2.7443 3.4517 -0.6498 26 7 2.7379 3.4274 0.6545 27 7 2.3004 2.1689 1.0822 28 6 2.1532 1.7419 2.4758 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.7687 3.5355 -3.2973 35 1 3.7469 0.6346 -4.7232 36 1 4.4329 2.1768 -5.2892 37 1 2.6160 0.3008 -6.8718 38 1 4.3452 0.6131 -7.1714 39 1 1.3552 2.5208 -9.4327 40 1 1.8577 3.9185 -7.8754 41 1 0.9926 2.4582 -7.3313 42 1 0.9766 4.5220 -4.2728 43 1 0.6903 5.0958 -5.9332 44 1 -0.0216 3.5583 -5.3878 45 1 4.2002 3.8586 -6.0149 46 1 3.1551 5.2712 -6.2993 47 1 3.4437 4.6974 -4.6393 48 1 3.0346 4.2886 -1.2675 49 1 1.1463 1.9742 2.8226 50 1 2.3231 0.6676 2.5465 51 1 2.8807 2.2663 3.0953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940861509.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:31 Heat of formation + Delta-G solvation = 47.243488 kcal Electronic energy + Delta-G solvation = -30470.035687 eV Core-core repulsion = 26599.182341 eV Total energy + Delta-G solvation = -3870.853346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -41.68889 -39.75332 -37.92740 -34.91134 -34.42417 -33.23196 -32.77474 -32.04103 -29.74208 -29.00021 -27.36825 -26.79674 -26.05603 -24.92299 -23.98276 -22.70315 -21.84041 -20.72375 -20.30776 -19.72090 -18.22007 -17.54051 -17.19593 -16.11721 -15.88668 -15.58237 -14.82190 -14.58541 -14.55208 -14.44321 -14.14187 -13.69177 -13.61693 -13.58631 -13.46927 -13.27636 -13.07590 -12.98568 -12.59387 -12.49542 -12.36688 -11.88718 -11.85592 -11.49512 -11.42992 -11.41769 -10.91132 -10.88653 -10.87415 -10.64591 -10.37431 -10.26427 -10.02399 -9.99439 -9.74263 -9.67723 -9.57948 -9.20586 -8.86182 -8.51896 -8.32102 -6.83779 -6.03031 -3.18549 1.36734 2.04795 2.07817 3.50309 3.52331 3.54725 3.58764 3.72494 4.18322 4.23618 4.61590 4.62267 4.68590 4.76817 4.96826 5.03398 5.06381 5.13575 5.19166 5.20273 5.38111 5.41002 5.47526 5.49714 5.58351 5.66987 5.84549 5.90444 5.94171 5.99854 6.03952 6.06426 6.19223 6.21113 6.27675 6.37582 6.44161 6.47157 6.59503 6.63111 6.64902 6.78356 6.86466 6.90912 6.98833 7.14393 7.20568 7.32779 7.84385 8.04475 8.53676 8.61380 9.15639 9.88625 10.33679 11.25553 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.024864 B = 0.002782 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.844059 B =10060.998280 C =10406.072431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 C 0.158 3.842 4 C -0.291 4.291 5 C 0.592 3.408 6 O -0.550 6.550 7 N -0.716 5.716 8 C 0.167 3.833 9 H 0.081 0.919 10 C -0.142 4.142 11 C 0.150 3.850 12 N -0.596 5.596 13 C -0.345 4.345 14 H 0.055 0.945 15 C -0.024 4.024 16 N -0.916 5.916 17 Si 1.061 2.939 18 H -0.294 1.294 19 H -0.286 1.286 20 H -0.294 1.294 21 C 0.166 3.834 22 C -0.091 4.091 23 C -0.135 4.135 24 C -0.128 4.128 25 C 0.082 3.918 26 N -0.300 5.300 27 N -0.365 5.365 28 C 0.097 3.903 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.393 0.607 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.056 0.944 39 H 0.269 0.731 40 H 0.084 0.916 41 H 0.017 0.983 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.052 0.948 47 H 0.032 0.968 48 H 0.188 0.812 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 -1.535 23.991 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 C 0.026 3.974 4 C -0.306 4.306 5 C 0.379 3.621 6 O -0.429 6.429 7 N -0.366 5.366 8 C 0.064 3.936 9 H 0.099 0.901 10 C -0.182 4.182 11 C 0.023 3.977 12 N -0.319 5.319 13 C -0.474 4.474 14 H 0.073 0.927 15 C -0.226 4.226 16 N -0.557 5.557 17 Si 0.891 3.109 18 H -0.221 1.221 19 H -0.212 1.212 20 H -0.221 1.221 21 C 0.039 3.961 22 C -0.094 4.094 23 C -0.193 4.193 24 C -0.185 4.185 25 C -0.105 4.105 26 N -0.120 5.120 27 N -0.144 5.144 28 C -0.044 4.044 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.035 0.965 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.051 0.949 48 H 0.205 0.795 49 H 0.096 0.904 50 H 0.108 0.892 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.993 -0.660 23.675 23.705 hybrid contribution 0.188 -0.936 0.860 1.284 sum -0.805 -1.596 24.535 24.600 Atomic orbital electron populations 1.21628 0.93390 1.02506 1.02196 1.20455 0.97121 0.88386 1.04784 1.21539 0.94810 0.94867 0.86234 1.20124 1.20372 0.96151 0.93943 1.17172 0.76823 0.84632 0.83483 1.90717 1.47758 1.20186 1.84216 1.46058 1.67836 1.16312 1.06438 1.20921 0.98639 0.96028 0.78038 0.90137 1.22433 0.97509 0.99608 0.98696 1.20867 0.98329 0.89695 0.88809 1.44099 1.34609 1.25925 1.27287 1.19938 0.93074 1.39731 0.94702 0.92713 1.25773 0.98038 1.01818 0.96922 1.70778 1.06486 1.39176 1.39216 0.83578 0.74750 0.76536 0.76022 1.22072 1.21175 1.22099 1.20895 0.89343 0.95810 0.90015 1.21348 0.95324 0.94155 0.98559 1.21784 0.97389 1.00181 0.99990 1.21754 0.98824 0.99212 0.98714 1.24020 0.97210 0.97312 0.91968 1.77172 1.22379 0.99101 1.13305 1.48325 1.50063 1.09759 1.06289 1.21937 1.03737 1.01277 0.77492 0.93367 0.91521 0.91470 0.86860 0.90982 0.77159 0.92641 0.91821 0.96452 0.92545 0.91998 0.89767 0.96549 0.93477 0.92556 0.93070 0.90992 0.92844 0.94943 0.79506 0.90361 0.89212 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.90 37.16 0.37 -0.87 16 2 C -0.07 -0.65 5.62 -27.88 -0.16 -0.81 16 3 C 0.16 1.80 6.26 -81.60 -0.51 1.29 16 4 C -0.29 -3.78 6.13 -105.06 -0.64 -4.42 16 5 C 0.59 8.95 7.78 -12.52 -0.10 8.85 16 6 O -0.55 -9.77 14.50 5.28 0.08 -9.70 16 7 N -0.72 -10.28 4.28 -54.84 -0.23 -10.52 16 8 C 0.17 2.87 1.57 -67.89 -0.11 2.77 16 9 H 0.08 1.56 7.57 -51.93 -0.39 1.17 16 10 C -0.14 -2.60 5.31 -26.61 -0.14 -2.74 16 11 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 12 N -0.60 -14.48 2.30 -172.58 -0.40 -14.88 16 13 C -0.35 -9.40 9.49 -15.06 -0.14 -9.54 16 14 H 0.06 1.51 7.94 -52.49 -0.42 1.09 16 15 C -0.02 -0.65 4.68 -17.43 -0.08 -0.74 16 16 N -0.92 -27.05 12.41 55.49 0.69 -26.36 16 17 Si 1.06 24.96 29.99 -169.99 -5.10 19.86 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.17 3.74 3.33 -3.93 -0.01 3.73 16 22 C -0.09 -1.61 0.56 -154.61 -0.09 -1.70 16 23 C -0.14 -2.09 8.31 37.16 0.31 -1.79 16 24 C -0.13 -2.16 7.82 37.16 0.29 -1.86 16 25 C 0.08 0.95 11.50 -16.98 -0.20 0.75 16 26 N -0.30 -3.61 12.50 30.86 0.39 -3.22 16 27 N -0.36 -3.75 3.98 -63.35 -0.25 -4.00 16 28 C 0.10 0.54 11.24 59.85 0.67 1.21 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 1.33 6.50 -51.93 -0.34 1.00 16 33 H 0.07 0.48 7.05 -51.93 -0.37 0.12 16 34 H 0.39 4.81 5.61 -40.82 -0.23 4.58 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.16 6.34 -51.93 -0.33 0.83 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 39 H 0.27 8.03 6.71 -40.82 -0.27 7.76 16 40 H 0.08 2.14 6.30 -51.93 -0.33 1.81 16 41 H 0.02 0.39 7.87 -51.93 -0.41 -0.02 16 42 H 0.05 0.63 7.36 -51.93 -0.38 0.24 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.37 5.98 -51.93 -0.31 1.06 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.03 0.43 6.58 -51.93 -0.34 0.09 16 48 H 0.19 1.61 7.50 -52.49 -0.39 1.22 16 49 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.09 0.31 7.02 -51.93 -0.36 -0.05 16 51 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -32.90 392.97 -7.78 -40.68 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.31 Total: 4.88 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.56 Total: -2.67 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.19 Total: -58.98 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.10 Total: 19.86 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.90 -7.78 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940861509.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.922 kcal (2) G-P(sol) polarization free energy of solvation -32.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds