Wall clock time and date at job start Tue Mar 31 2020 18:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50695 * 109.46998 * 2 1 4 4 C 1.38042 * 126.29359 * 270.00434 * 3 2 1 5 5 C 1.47430 * 126.41405 * 0.02562 * 4 3 2 6 6 O 1.21599 * 119.99708 * 359.71088 * 5 4 3 7 7 N 1.34778 * 119.99791 * 179.71594 * 5 4 3 8 8 C 1.46504 * 119.99703 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.45712 * 34.97107 * 8 7 5 10 10 C 1.53042 * 109.45893 * 275.00076 * 8 7 5 11 11 C 1.53191 * 109.30934 * 178.62923 * 10 8 7 12 12 N 1.46933 * 108.78000 * 54.63332 * 11 10 8 13 13 C 1.36934 * 120.63168 * 126.36332 * 12 11 10 14 14 H 1.08001 * 120.00050 * 332.51150 * 13 12 11 15 15 C 1.38809 * 119.99751 * 152.50359 * 13 12 11 16 16 N 1.31614 * 120.00350 * 335.03508 * 15 13 12 17 17 Si 1.86804 * 119.99809 * 155.03104 * 15 13 12 18 18 H 1.48500 * 109.46888 * 60.00458 * 17 15 13 19 19 H 1.48503 * 109.46987 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47223 * 300.00100 * 17 15 13 21 21 C 1.46928 * 118.73761 * 306.64597 * 12 11 10 22 22 C 1.52768 * 109.00701 * 53.30366 * 21 12 11 23 23 C 1.52996 * 109.56311 * 185.55450 * 22 21 12 24 24 C 1.52998 * 109.38550 * 65.51708 * 22 21 12 25 25 C 1.41297 * 107.17174 * 179.75997 * 4 3 2 26 26 N 1.30453 * 108.02128 * 0.23691 * 25 4 3 27 27 N 1.34265 * 126.28999 * 90.17628 * 3 2 1 28 28 C 1.46499 * 125.75370 * 359.96481 * 27 3 2 29 29 H 1.08998 * 109.47019 * 300.00009 * 1 2 3 30 30 H 1.08998 * 109.46775 * 60.00137 * 1 2 3 31 31 H 1.09001 * 109.47027 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47019 * 239.99991 * 2 1 3 33 33 H 1.08989 * 109.47072 * 120.00389 * 2 1 3 34 34 H 0.97000 * 120.00458 * 359.97438 * 7 5 4 35 35 H 1.08992 * 109.49955 * 58.67978 * 10 8 7 36 36 H 1.09002 * 109.52699 * 298.59022 * 10 8 7 37 37 H 1.09001 * 109.59242 * 294.84995 * 11 10 8 38 38 H 1.09004 * 109.58982 * 174.41897 * 11 10 8 39 39 H 0.97008 * 120.00026 * 354.25254 * 16 15 13 40 40 H 1.08992 * 109.58881 * 173.13939 * 21 12 11 41 41 H 1.08996 * 109.58116 * 293.56697 * 21 12 11 42 42 H 1.09002 * 109.47461 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.47181 * 299.96595 * 23 22 21 44 44 H 1.08999 * 109.47728 * 59.96496 * 23 22 21 45 45 H 1.09005 * 109.47334 * 300.14101 * 24 22 21 46 46 H 1.09003 * 109.46960 * 60.14126 * 24 22 21 47 47 H 1.08996 * 109.47186 * 180.14140 * 24 22 21 48 48 H 1.07994 * 125.98736 * 180.24365 * 25 4 3 49 49 H 1.08994 * 109.46988 * 270.30100 * 28 27 3 50 50 H 1.08998 * 109.47019 * 30.30477 * 28 27 3 51 51 H 1.09000 * 109.47243 * 150.30461 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3046 2.1912 -1.1126 5 6 2.1580 1.7782 -2.5203 6 8 1.7671 0.6583 -2.7877 7 7 2.4572 2.6420 -3.5106 8 6 2.3120 2.2315 -4.9094 9 1 1.4556 1.5639 -5.0049 10 6 3.5795 1.5024 -5.3610 11 6 3.4106 1.0447 -6.8131 12 7 3.0575 2.2083 -7.6378 13 6 3.7859 2.5185 -8.7551 14 1 4.8267 2.2367 -8.8166 15 6 3.1866 3.1951 -9.8086 16 7 1.8848 3.1164 -9.9857 17 14 4.2278 4.2174 -10.9749 18 1 5.2333 3.3458 -11.6341 19 1 3.3550 4.8345 -12.0059 20 1 4.9225 5.2852 -10.2117 21 6 1.9117 3.0364 -7.2374 22 6 2.0941 3.4686 -5.7836 23 6 0.8451 4.2147 -5.3103 24 6 3.3107 4.3902 -5.6765 25 6 2.7443 3.4517 -0.6498 26 7 2.7379 3.4274 0.6545 27 7 2.3004 2.1689 1.0822 28 6 2.1532 1.7419 2.4758 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.7687 3.5355 -3.2973 35 1 3.7469 0.6346 -4.7232 36 1 4.4329 2.1768 -5.2892 37 1 2.6160 0.3008 -6.8718 38 1 4.3452 0.6131 -7.1714 39 1 1.3552 2.5208 -9.4327 40 1 1.8577 3.9185 -7.8754 41 1 0.9926 2.4582 -7.3313 42 1 0.9766 4.5220 -4.2728 43 1 0.6903 5.0958 -5.9332 44 1 -0.0216 3.5583 -5.3878 45 1 4.2002 3.8586 -6.0149 46 1 3.1551 5.2712 -6.2993 47 1 3.4437 4.6974 -4.6393 48 1 3.0346 4.2886 -1.2675 49 1 1.1463 1.9742 2.8226 50 1 2.3231 0.6676 2.5465 51 1 2.8807 2.2663 3.0953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940861509.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:24 Heat of formation + Delta-G solvation = 27.081910 kcal Electronic energy + Delta-G solvation = -30470.909958 eV Core-core repulsion = 26599.182341 eV Total energy + Delta-G solvation = -3871.727618 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.54166 -41.14973 -39.33683 -36.47910 -35.37668 -34.22184 -34.02526 -33.73109 -31.17788 -30.16574 -28.25349 -28.09025 -27.74065 -26.47827 -24.93678 -24.05170 -23.07557 -22.42108 -21.32762 -20.75543 -19.60515 -19.35001 -18.44717 -17.08023 -16.94489 -16.63293 -16.29249 -15.90411 -15.77959 -15.50650 -15.44114 -15.26725 -15.17932 -14.94782 -14.72105 -14.31248 -14.10847 -13.96858 -13.64160 -13.60306 -13.51101 -13.22118 -12.96054 -12.89580 -12.69104 -12.60343 -12.48065 -12.41668 -12.16171 -12.09820 -11.89831 -11.76308 -11.71654 -11.64940 -11.35031 -11.11097 -10.78699 -10.43077 -10.42051 -10.02430 -9.57144 -8.89728 -8.20769 -5.35165 0.49295 1.14359 1.39352 1.60867 1.67709 1.86506 2.32444 2.49114 2.68386 3.24694 3.47835 3.48742 3.55790 3.67531 3.91259 3.92580 4.00973 4.07335 4.23111 4.29179 4.29971 4.35932 4.38780 4.43703 4.51511 4.58264 4.64014 4.66726 4.71739 4.77925 4.79972 4.87630 4.94185 4.97842 4.98265 5.04734 5.14179 5.16591 5.19328 5.26901 5.27719 5.31999 5.39380 5.41064 5.60999 5.64893 5.87546 5.88421 6.42490 6.48888 6.71376 7.08229 7.37978 7.81474 8.26211 9.04390 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.024864 B = 0.002782 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.844059 B =10060.998280 C =10406.072431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.067 4.067 3 C 0.159 3.841 4 C -0.319 4.319 5 C 0.592 3.408 6 O -0.582 6.582 7 N -0.705 5.705 8 C 0.181 3.819 9 H 0.055 0.945 10 C -0.127 4.127 11 C 0.147 3.853 12 N -0.609 5.609 13 C -0.347 4.347 14 H 0.050 0.950 15 C -0.073 4.073 16 N -0.943 5.943 17 Si 1.111 2.889 18 H -0.279 1.279 19 H -0.294 1.294 20 H -0.277 1.277 21 C 0.175 3.825 22 C -0.082 4.082 23 C -0.130 4.130 24 C -0.122 4.122 25 C 0.085 3.915 26 N -0.320 5.320 27 N -0.360 5.360 28 C 0.083 3.917 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.407 0.593 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.005 0.995 38 H 0.053 0.947 39 H 0.252 0.748 40 H 0.053 0.947 41 H -0.008 1.008 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.042 0.958 45 H 0.049 0.951 46 H 0.045 0.955 47 H 0.074 0.926 48 H 0.212 0.788 49 H 0.094 0.906 50 H 0.114 0.886 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -0.592 27.099 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 C 0.025 3.975 4 C -0.334 4.334 5 C 0.382 3.618 6 O -0.463 6.463 7 N -0.356 5.356 8 C 0.076 3.924 9 H 0.074 0.926 10 C -0.167 4.167 11 C 0.021 3.979 12 N -0.333 5.333 13 C -0.477 4.477 14 H 0.068 0.932 15 C -0.270 4.270 16 N -0.585 5.585 17 Si 0.936 3.064 18 H -0.205 1.205 19 H -0.220 1.220 20 H -0.203 1.203 21 C 0.049 3.951 22 C -0.084 4.084 23 C -0.188 4.188 24 C -0.179 4.179 25 C -0.102 4.102 26 N -0.139 5.139 27 N -0.138 5.138 28 C -0.056 4.056 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.245 0.755 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.023 0.977 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.010 0.990 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.228 0.772 49 H 0.112 0.888 50 H 0.132 0.868 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.003 0.295 26.856 26.858 hybrid contribution -0.140 -1.352 -0.008 1.359 sum -0.143 -1.056 26.848 26.870 Atomic orbital electron populations 1.21584 0.92929 1.03204 1.01490 1.20477 0.97399 0.87482 1.05195 1.21801 0.93871 0.95444 0.86378 1.20023 1.22883 0.97582 0.92894 1.17490 0.75898 0.84056 0.84401 1.90707 1.49183 1.21630 1.84807 1.45769 1.67974 1.16984 1.04890 1.20500 0.97014 0.95129 0.79715 0.92644 1.22230 0.98312 0.99954 0.96180 1.20939 0.97583 0.88788 0.90584 1.44287 1.34686 1.27199 1.27153 1.20163 0.93025 1.39023 0.95504 0.93203 1.27090 0.98296 1.02950 0.98638 1.70902 1.07430 1.40161 1.40009 0.82906 0.73560 0.75662 0.74270 1.20507 1.22030 1.20265 1.20727 0.87794 0.93857 0.92755 1.21153 0.97244 0.94825 0.95175 1.21740 0.95706 0.99644 1.01692 1.21686 0.96925 0.98144 1.01138 1.24383 0.96416 0.97358 0.92054 1.77137 1.23060 1.00226 1.13521 1.48674 1.48655 1.08958 1.07531 1.22380 1.05064 1.02966 0.75187 0.91598 0.94574 0.90135 0.89401 0.87568 0.75521 0.92229 0.91115 0.97660 0.92870 0.93762 0.92811 0.99004 0.90448 0.92466 0.93868 0.93197 0.93623 0.90761 0.77158 0.88779 0.86778 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.90 71.98 0.71 -1.45 16 2 C -0.07 -1.15 5.62 29.85 0.17 -0.98 16 3 C 0.16 3.31 6.26 42.14 0.26 3.57 16 4 C -0.32 -7.75 6.13 -20.15 -0.12 -7.87 16 5 C 0.59 17.41 7.78 86.66 0.67 18.09 16 6 O -0.58 -20.86 14.50 -4.03 -0.06 -20.92 16 7 N -0.71 -19.16 4.28 -445.66 -1.91 -21.07 16 8 C 0.18 6.20 1.57 45.02 0.07 6.27 16 9 H 0.06 2.21 7.57 -2.39 -0.02 2.19 16 10 C -0.13 -4.62 5.31 30.67 0.16 -4.46 16 11 C 0.15 6.49 6.52 86.36 0.56 7.05 16 12 N -0.61 -30.60 2.30 -699.91 -1.61 -32.21 16 13 C -0.35 -19.33 9.49 84.03 0.80 -18.53 16 14 H 0.05 2.78 7.94 -2.91 -0.02 2.76 16 15 C -0.07 -4.17 4.68 84.86 0.40 -3.77 16 16 N -0.94 -57.65 12.41 21.65 0.27 -57.38 16 17 Si 1.11 50.81 29.99 68.60 2.06 52.86 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 21 C 0.18 8.21 3.33 86.22 0.29 8.50 16 22 C -0.08 -2.87 0.56 -52.25 -0.03 -2.90 16 23 C -0.13 -3.89 8.31 71.98 0.60 -3.29 16 24 C -0.12 -3.92 7.82 71.98 0.56 -3.35 16 25 C 0.09 1.74 11.50 85.65 0.99 2.73 16 26 N -0.32 -6.86 12.50 -56.27 -0.70 -7.56 16 27 N -0.36 -6.37 3.98 -354.32 -1.41 -7.78 16 28 C 0.08 0.63 11.24 127.77 1.44 2.07 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.09 2.03 6.50 -2.39 -0.02 2.01 16 33 H 0.11 1.06 7.05 -2.39 -0.02 1.04 16 34 H 0.41 8.75 5.61 -92.71 -0.52 8.23 16 35 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.07 2.50 6.34 -2.39 -0.02 2.49 16 37 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.05 2.33 7.93 -2.39 -0.02 2.31 16 39 H 0.25 15.88 6.71 -92.70 -0.62 15.26 16 40 H 0.05 2.85 6.30 -2.39 -0.02 2.83 16 41 H -0.01 -0.40 7.87 -2.39 -0.02 -0.42 16 42 H 0.08 1.85 7.36 -2.39 -0.02 1.83 16 43 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 44 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.05 1.84 5.98 -2.38 -0.01 1.83 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 1.75 6.58 -2.39 -0.02 1.73 16 48 H 0.21 2.92 7.50 -2.91 -0.02 2.90 16 49 H 0.09 0.46 8.14 -2.39 -0.02 0.45 16 50 H 0.11 0.31 7.02 -2.39 -0.02 0.30 16 51 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -74.69 392.97 4.72 -69.97 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.56 Total: 22.41 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 7.53 Total: 1.68 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -5.36 Total: -126.01 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.06 Total: -20.92 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 2.06 Total: 52.86 kcal Total: -74.69 4.72 -69.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940861509.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.051 kcal (2) G-P(sol) polarization free energy of solvation -74.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds