Wall clock time and date at job start Tue Mar 31 2020 19:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46823 * 2 1 4 4 C 1.50698 * 109.46793 * 180.02562 * 3 2 1 5 5 C 1.35365 * 126.38534 * 275.25443 * 4 3 2 6 6 C 1.41503 * 105.50586 * 180.15925 * 5 4 3 7 7 C 1.47706 * 126.52228 * 179.90597 * 6 5 4 8 8 O 1.21578 * 119.99922 * 359.71277 * 7 6 5 9 9 N 1.34772 * 120.00049 * 179.71248 * 7 6 5 10 10 C 1.46510 * 119.99685 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.45010 * 34.96573 * 10 9 7 12 12 C 1.53042 * 109.46107 * 274.99924 * 10 9 7 13 13 C 1.53187 * 109.31207 * 178.61481 * 12 10 9 14 14 N 1.46920 * 108.77436 * 54.64066 * 13 12 10 15 15 C 1.36940 * 120.63357 * 126.36916 * 14 13 12 16 16 H 1.07997 * 119.99487 * 332.50127 * 15 14 13 17 17 C 1.38809 * 120.00020 * 152.50088 * 15 14 13 18 18 N 1.31625 * 120.00314 * 335.02519 * 17 15 14 19 19 Si 1.86803 * 119.99831 * 155.01934 * 17 15 14 20 20 H 1.48499 * 109.47125 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46931 * 120.00189 * 19 17 15 22 22 H 1.48496 * 109.47273 * 240.00296 * 19 17 15 23 23 C 1.46928 * 118.73646 * 306.63846 * 14 13 12 24 24 C 1.52758 * 109.00696 * 53.31210 * 23 14 13 25 25 C 1.53008 * 109.56365 * 185.55200 * 24 23 14 26 26 C 1.53000 * 109.36148 * 65.50161 * 24 23 14 27 27 N 1.31815 * 106.96161 * 359.64334 * 6 5 4 28 28 N 1.28468 * 110.07287 * 0.22396 * 27 6 5 29 29 H 0.96997 * 124.88527 * 179.97438 * 28 27 6 30 30 H 1.09001 * 109.47563 * 60.00202 * 1 2 3 31 31 H 1.08996 * 109.46941 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47391 * 300.00335 * 1 2 3 33 33 H 1.08998 * 109.47238 * 240.00341 * 2 1 3 34 34 H 1.08992 * 109.47455 * 119.99202 * 2 1 3 35 35 H 1.08992 * 109.47561 * 59.99927 * 3 2 1 36 36 H 1.09002 * 109.47186 * 299.99759 * 3 2 1 37 37 H 1.08001 * 127.24716 * 0.05180 * 5 4 3 38 38 H 0.96993 * 120.00740 * 0.02562 * 9 7 6 39 39 H 1.09009 * 109.49443 * 58.66552 * 12 10 9 40 40 H 1.09000 * 109.52639 * 298.58930 * 12 10 9 41 41 H 1.08996 * 109.58664 * 294.84755 * 13 12 10 42 42 H 1.09010 * 109.69962 * 174.49157 * 13 12 10 43 43 H 0.96998 * 119.99686 * 354.25090 * 18 17 15 44 44 H 1.09007 * 109.58583 * 173.14684 * 23 14 13 45 45 H 1.08998 * 109.58571 * 293.57108 * 23 14 13 46 46 H 1.08993 * 109.46867 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47068 * 299.96429 * 25 24 23 48 48 H 1.08999 * 109.46973 * 59.96212 * 25 24 23 49 49 H 1.09003 * 109.46779 * 300.15859 * 26 24 23 50 50 H 1.09000 * 109.47414 * 60.15575 * 26 24 23 51 51 H 1.08998 * 109.47633 * 180.16095 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3504 1.3426 1.0842 6 6 5.6723 1.3926 0.5818 7 6 6.9170 1.3230 1.3740 8 8 6.8623 1.2166 2.5838 9 7 8.1132 1.3775 0.7556 10 6 9.3478 1.3091 1.5415 11 1 9.2003 0.6433 2.3919 12 6 9.7093 2.7080 2.0460 13 6 10.9813 2.6270 2.8959 14 7 12.0371 1.9789 2.1062 15 6 13.2544 2.5836 1.9392 16 1 13.3320 3.6602 1.9756 17 6 14.3885 1.8129 1.7232 18 7 14.4288 0.5678 2.1481 19 14 15.8573 2.5427 0.8291 20 1 15.5616 3.9497 0.4575 21 1 17.0464 2.5054 1.7180 22 1 16.1319 1.7534 -0.3983 23 6 11.7601 0.6722 1.4940 24 6 10.4813 0.7726 0.6645 25 6 10.1048 -0.6123 0.1340 26 6 10.7123 1.7247 -0.5106 27 7 5.5817 1.5074 -0.7282 28 7 4.3476 1.5379 -1.0839 29 1 4.0357 1.6183 -1.9988 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9564 -0.8900 37 1 4.0465 1.2468 2.1161 38 1 8.1569 1.4628 -0.2096 39 1 8.8915 3.0990 2.6514 40 1 9.8809 3.3687 1.1962 41 1 10.7843 2.0409 3.7935 42 1 11.2996 3.6309 3.1774 43 1 13.7017 0.2145 2.6842 44 1 12.5913 0.3875 0.8487 45 1 11.6280 -0.0765 2.2750 46 1 9.1921 -0.5391 -0.4572 47 1 10.9124 -0.9941 -0.4907 48 1 9.9419 -1.2904 0.9717 49 1 10.9819 2.7106 -0.1317 50 1 11.5198 1.3422 -1.1350 51 1 9.8000 1.7999 -1.1022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940936361.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:55 Heat of formation + Delta-G solvation = 35.497527 kcal Electronic energy + Delta-G solvation = -29636.533318 eV Core-core repulsion = 25765.170629 eV Total energy + Delta-G solvation = -3871.362689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.90128 -39.87174 -38.02477 -35.79640 -34.73031 -32.93799 -32.26702 -31.79592 -31.22564 -29.15290 -26.91029 -26.78860 -26.09005 -25.34035 -23.60626 -22.40565 -21.83473 -21.26151 -20.67770 -19.83828 -18.18907 -17.91975 -17.41316 -16.68201 -15.95998 -15.68335 -15.51671 -14.57492 -14.54724 -14.41483 -14.08298 -13.92330 -13.64524 -13.62960 -13.58116 -13.45303 -13.24327 -12.69377 -12.59968 -12.38426 -11.99094 -11.83634 -11.79013 -11.47122 -11.42656 -11.29632 -11.00496 -10.89610 -10.86987 -10.63400 -10.37277 -10.27370 -10.05380 -10.00434 -9.90860 -9.71220 -9.57244 -9.21268 -9.20496 -8.63600 -8.31308 -6.82987 -6.02195 -3.17691 1.46714 1.90210 2.58880 3.37464 3.51230 3.53416 3.55911 3.69306 4.17628 4.29525 4.45836 4.53957 4.62650 4.83100 4.93829 5.10903 5.19450 5.20474 5.25458 5.28652 5.39893 5.42067 5.49493 5.53542 5.56251 5.59328 5.75000 5.79474 5.84296 5.92208 6.03324 6.08607 6.17505 6.19359 6.27894 6.38070 6.43334 6.46658 6.63506 6.64963 6.71174 6.78773 6.87026 6.90715 6.96667 7.14889 7.21137 7.55182 7.85163 8.06195 8.40987 8.62324 9.16543 9.89467 10.34479 11.26453 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.031135 B = 0.002298 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.091392 B =12178.983052 C =12351.662639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.050 4.050 4 C 0.013 3.987 5 C -0.175 4.175 6 C -0.004 4.004 7 C 0.597 3.403 8 O -0.535 6.535 9 N -0.705 5.705 10 C 0.164 3.836 11 H 0.082 0.918 12 C -0.143 4.143 13 C 0.150 3.850 14 N -0.596 5.596 15 C -0.344 4.344 16 H 0.056 0.944 17 C -0.025 4.025 18 N -0.918 5.918 19 Si 1.066 2.934 20 H -0.293 1.293 21 H -0.295 1.295 22 H -0.291 1.291 23 C 0.166 3.834 24 C -0.091 4.091 25 C -0.136 4.136 26 C -0.129 4.129 27 N -0.259 5.259 28 N -0.382 5.382 29 H 0.443 0.557 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.161 0.839 38 H 0.402 0.598 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.018 0.982 42 H 0.057 0.943 43 H 0.270 0.730 44 H 0.085 0.915 45 H 0.017 0.983 46 H 0.046 0.954 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.071 0.929 50 H 0.053 0.947 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.255 0.099 -8.631 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.112 4.112 5 C -0.203 4.203 6 C -0.166 4.166 7 C 0.381 3.619 8 O -0.410 6.410 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.100 0.900 12 C -0.183 4.183 13 C 0.023 3.977 14 N -0.319 5.319 15 C -0.473 4.473 16 H 0.074 0.926 17 C -0.226 4.226 18 N -0.558 5.558 19 Si 0.896 3.104 20 H -0.219 1.219 21 H -0.222 1.222 22 H -0.218 1.218 23 C 0.039 3.961 24 C -0.093 4.093 25 C -0.194 4.194 26 C -0.186 4.186 27 N -0.095 5.095 28 N -0.096 5.096 29 H 0.287 0.713 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.179 0.821 38 H 0.238 0.762 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.035 0.965 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.072 0.928 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -24.039 -0.206 -9.264 25.763 hybrid contribution -2.210 0.414 0.316 2.271 sum -26.249 0.208 -8.948 27.733 Atomic orbital electron populations 1.21780 0.95189 1.02082 1.02002 1.21551 0.96026 0.95459 1.02942 1.20220 0.86276 0.98320 1.04047 1.21417 0.95003 1.07453 0.87369 1.21518 0.90477 1.08505 0.99821 1.22102 0.95495 1.09175 0.89792 1.16918 0.81764 0.76819 0.86408 1.90794 1.86775 1.50320 1.13113 1.46177 1.05310 1.72801 1.11316 1.21014 0.81553 0.97675 0.93737 0.89985 1.22445 0.99024 0.96197 1.00653 1.20865 0.87614 0.97129 0.92106 1.44115 1.11322 1.20239 1.56266 1.19991 0.85061 0.91899 1.50360 0.92631 1.25780 0.99286 0.96815 1.00764 1.70716 1.34173 1.16913 1.34001 0.83517 0.75639 0.74603 0.76596 1.21883 1.22202 1.21752 1.20907 0.93461 0.87534 0.94201 1.21347 0.96765 0.94670 0.96534 1.21794 1.00538 0.96452 1.00649 1.21764 0.99400 1.00919 0.96529 1.73572 1.01433 1.19284 1.15230 1.43298 1.02979 1.53492 1.09786 0.71310 0.92686 0.92395 0.92359 0.91985 0.91071 0.88972 0.90650 0.82103 0.76187 0.92570 0.91708 0.96370 0.92428 0.91934 0.89683 0.96465 0.93450 0.92483 0.93021 0.90970 0.92797 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.23 16 2 C -0.12 -0.60 5.92 -26.73 -0.16 -0.75 16 3 C -0.05 -0.24 5.77 -27.88 -0.16 -0.41 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 5 C -0.18 -2.02 10.73 -39.36 -0.42 -2.44 16 6 C 0.00 -0.06 7.13 -82.76 -0.59 -0.65 16 7 C 0.60 9.90 7.79 -12.39 -0.10 9.80 16 8 O -0.53 -10.46 16.59 5.30 0.09 -10.37 16 9 N -0.71 -11.16 4.28 -54.75 -0.23 -11.40 16 10 C 0.16 2.96 1.57 -67.88 -0.11 2.85 16 11 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 12 C -0.14 -2.71 5.31 -26.61 -0.14 -2.85 16 13 C 0.15 3.26 6.52 -3.72 -0.02 3.24 16 14 N -0.60 -14.71 2.30 -172.59 -0.40 -15.11 16 15 C -0.34 -9.45 9.49 -15.06 -0.14 -9.59 16 16 H 0.06 1.55 7.94 -52.49 -0.42 1.13 16 17 C -0.02 -0.69 4.68 -17.43 -0.08 -0.77 16 18 N -0.92 -27.31 12.41 55.49 0.69 -26.63 16 19 Si 1.07 25.30 29.99 -169.99 -5.10 20.21 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 C 0.17 3.81 3.33 -3.93 -0.01 3.79 16 24 C -0.09 -1.67 0.56 -154.61 -0.09 -1.76 16 25 C -0.14 -2.22 8.31 37.16 0.31 -1.91 16 26 C -0.13 -2.28 7.82 37.16 0.29 -1.99 16 27 N -0.26 -3.10 11.92 33.42 0.40 -2.70 16 28 N -0.38 -3.18 6.83 33.50 0.23 -2.95 16 29 H 0.44 2.04 8.96 -190.44 -1.71 0.34 16 30 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.40 5.82 6.39 -40.82 -0.26 5.56 16 39 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 40 H 0.06 1.22 6.34 -51.93 -0.33 0.90 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 1.25 7.93 -51.92 -0.41 0.84 16 43 H 0.27 8.12 6.71 -40.82 -0.27 7.85 16 44 H 0.08 2.19 6.30 -51.93 -0.33 1.86 16 45 H 0.02 0.42 7.87 -51.93 -0.41 0.01 16 46 H 0.05 0.69 7.36 -51.93 -0.38 0.31 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.07 1.42 5.97 -51.93 -0.31 1.11 16 50 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.03 0.50 6.58 -51.93 -0.34 0.16 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -32.76 398.65 -9.76 -42.52 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -9.85 Total: 4.50 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.59 Total: -4.08 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.68 Total: -58.79 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.10 Total: 20.21 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.76 -9.76 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940936361.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.016 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds