Wall clock time and date at job start Tue Mar 31 2020 19:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46823 * 2 1 4 4 C 1.50698 * 109.46793 * 180.02562 * 3 2 1 5 5 C 1.35365 * 126.38534 * 275.25443 * 4 3 2 6 6 C 1.41503 * 105.50586 * 180.15925 * 5 4 3 7 7 C 1.47706 * 126.52228 * 179.90597 * 6 5 4 8 8 O 1.21578 * 119.99922 * 359.71277 * 7 6 5 9 9 N 1.34772 * 120.00049 * 179.71248 * 7 6 5 10 10 C 1.46510 * 119.99685 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.45010 * 34.96573 * 10 9 7 12 12 C 1.53042 * 109.46107 * 274.99924 * 10 9 7 13 13 C 1.53187 * 109.31207 * 178.61481 * 12 10 9 14 14 N 1.46920 * 108.77436 * 54.64066 * 13 12 10 15 15 C 1.36940 * 120.63357 * 126.36916 * 14 13 12 16 16 H 1.07997 * 119.99487 * 332.50127 * 15 14 13 17 17 C 1.38809 * 120.00020 * 152.50088 * 15 14 13 18 18 N 1.31625 * 120.00314 * 335.02519 * 17 15 14 19 19 Si 1.86803 * 119.99831 * 155.01934 * 17 15 14 20 20 H 1.48499 * 109.47125 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46931 * 120.00189 * 19 17 15 22 22 H 1.48496 * 109.47273 * 240.00296 * 19 17 15 23 23 C 1.46928 * 118.73646 * 306.63846 * 14 13 12 24 24 C 1.52758 * 109.00696 * 53.31210 * 23 14 13 25 25 C 1.53008 * 109.56365 * 185.55200 * 24 23 14 26 26 C 1.53000 * 109.36148 * 65.50161 * 24 23 14 27 27 N 1.31815 * 106.96161 * 359.64334 * 6 5 4 28 28 N 1.28468 * 110.07287 * 0.22396 * 27 6 5 29 29 H 0.96997 * 124.88527 * 179.97438 * 28 27 6 30 30 H 1.09001 * 109.47563 * 60.00202 * 1 2 3 31 31 H 1.08996 * 109.46941 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47391 * 300.00335 * 1 2 3 33 33 H 1.08998 * 109.47238 * 240.00341 * 2 1 3 34 34 H 1.08992 * 109.47455 * 119.99202 * 2 1 3 35 35 H 1.08992 * 109.47561 * 59.99927 * 3 2 1 36 36 H 1.09002 * 109.47186 * 299.99759 * 3 2 1 37 37 H 1.08001 * 127.24716 * 0.05180 * 5 4 3 38 38 H 0.96993 * 120.00740 * 0.02562 * 9 7 6 39 39 H 1.09009 * 109.49443 * 58.66552 * 12 10 9 40 40 H 1.09000 * 109.52639 * 298.58930 * 12 10 9 41 41 H 1.08996 * 109.58664 * 294.84755 * 13 12 10 42 42 H 1.09010 * 109.69962 * 174.49157 * 13 12 10 43 43 H 0.96998 * 119.99686 * 354.25090 * 18 17 15 44 44 H 1.09007 * 109.58583 * 173.14684 * 23 14 13 45 45 H 1.08998 * 109.58571 * 293.57108 * 23 14 13 46 46 H 1.08993 * 109.46867 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47068 * 299.96429 * 25 24 23 48 48 H 1.08999 * 109.46973 * 59.96212 * 25 24 23 49 49 H 1.09003 * 109.46779 * 300.15859 * 26 24 23 50 50 H 1.09000 * 109.47414 * 60.15575 * 26 24 23 51 51 H 1.08998 * 109.47633 * 180.16095 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3504 1.3426 1.0842 6 6 5.6723 1.3926 0.5818 7 6 6.9170 1.3230 1.3740 8 8 6.8623 1.2166 2.5838 9 7 8.1132 1.3775 0.7556 10 6 9.3478 1.3091 1.5415 11 1 9.2003 0.6433 2.3919 12 6 9.7093 2.7080 2.0460 13 6 10.9813 2.6270 2.8959 14 7 12.0371 1.9789 2.1062 15 6 13.2544 2.5836 1.9392 16 1 13.3320 3.6602 1.9756 17 6 14.3885 1.8129 1.7232 18 7 14.4288 0.5678 2.1481 19 14 15.8573 2.5427 0.8291 20 1 15.5616 3.9497 0.4575 21 1 17.0464 2.5054 1.7180 22 1 16.1319 1.7534 -0.3983 23 6 11.7601 0.6722 1.4940 24 6 10.4813 0.7726 0.6645 25 6 10.1048 -0.6123 0.1340 26 6 10.7123 1.7247 -0.5106 27 7 5.5817 1.5074 -0.7282 28 7 4.3476 1.5379 -1.0839 29 1 4.0357 1.6183 -1.9988 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9564 -0.8900 37 1 4.0465 1.2468 2.1161 38 1 8.1569 1.4628 -0.2096 39 1 8.8915 3.0990 2.6514 40 1 9.8809 3.3687 1.1962 41 1 10.7843 2.0409 3.7935 42 1 11.2996 3.6309 3.1774 43 1 13.7017 0.2145 2.6842 44 1 12.5913 0.3875 0.8487 45 1 11.6280 -0.0765 2.2750 46 1 9.1921 -0.5391 -0.4572 47 1 10.9124 -0.9941 -0.4907 48 1 9.9419 -1.2904 0.9717 49 1 10.9819 2.7106 -0.1317 50 1 11.5198 1.3422 -1.1350 51 1 9.8000 1.7999 -1.1022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940936361.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:53 Heat of formation + Delta-G solvation = 15.213188 kcal Electronic energy + Delta-G solvation = -29637.412913 eV Core-core repulsion = 25765.170629 eV Total energy + Delta-G solvation = -3872.242284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.73083 -41.35347 -39.55202 -36.52025 -36.23610 -34.41691 -33.96788 -32.89796 -31.91776 -30.91388 -28.26312 -27.79507 -27.45685 -26.95539 -25.09426 -23.47486 -22.84951 -22.45716 -21.93852 -21.11555 -19.68530 -19.37726 -18.69632 -17.95299 -17.10085 -16.85190 -16.33079 -16.01397 -15.93061 -15.80376 -15.46191 -15.29223 -15.05218 -15.00828 -14.77416 -14.56675 -14.27433 -14.00529 -13.92447 -13.61664 -13.05458 -13.01553 -12.94625 -12.69968 -12.54453 -12.48674 -12.44896 -12.14833 -12.12711 -11.93263 -11.87691 -11.81229 -11.71428 -11.53959 -11.41748 -11.34082 -11.05736 -10.50379 -10.44847 -10.03065 -9.96346 -8.91776 -8.22180 -5.36557 0.47441 1.08153 1.60056 1.67349 1.83016 1.83658 2.20442 2.32586 2.66840 3.23090 3.32716 3.52092 3.60918 3.64519 3.85915 3.95585 3.98226 4.17032 4.22468 4.23940 4.31602 4.44379 4.47005 4.53190 4.56583 4.68909 4.72013 4.75292 4.81427 4.85255 4.88104 4.93895 4.94399 4.98838 5.00072 5.09745 5.12886 5.20585 5.23177 5.27456 5.30727 5.34889 5.35551 5.45404 5.47860 5.58840 5.87550 6.07970 6.41304 6.45230 6.84681 7.06335 7.13988 7.79648 8.24363 9.03168 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.031135 B = 0.002298 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.091392 B =12178.983052 C =12351.662639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.046 4.046 4 C 0.039 3.961 5 C -0.199 4.199 6 C -0.033 4.033 7 C 0.597 3.403 8 O -0.572 6.572 9 N -0.695 5.695 10 C 0.175 3.825 11 H 0.059 0.941 12 C -0.128 4.128 13 C 0.147 3.853 14 N -0.609 5.609 15 C -0.346 4.346 16 H 0.051 0.949 17 C -0.075 4.075 18 N -0.943 5.943 19 Si 1.116 2.884 20 H -0.274 1.274 21 H -0.294 1.294 22 H -0.286 1.286 23 C 0.175 3.825 24 C -0.082 4.082 25 C -0.131 4.131 26 C -0.122 4.122 27 N -0.265 5.265 28 N -0.361 5.361 29 H 0.461 0.539 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.159 0.841 38 H 0.412 0.588 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.008 0.992 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.056 0.944 45 H -0.005 1.005 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.045 0.955 49 H 0.051 0.949 50 H 0.048 0.952 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.851 1.005 -11.302 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.085 4.085 4 C -0.088 4.088 5 C -0.227 4.227 6 C -0.193 4.193 7 C 0.383 3.617 8 O -0.450 6.450 9 N -0.346 5.346 10 C 0.071 3.929 11 H 0.078 0.922 12 C -0.168 4.168 13 C 0.021 3.979 14 N -0.333 5.333 15 C -0.475 4.475 16 H 0.068 0.932 17 C -0.271 4.271 18 N -0.585 5.585 19 Si 0.941 3.059 20 H -0.199 1.199 21 H -0.221 1.221 22 H -0.212 1.212 23 C 0.049 3.951 24 C -0.084 4.084 25 C -0.188 4.188 26 C -0.179 4.179 27 N -0.103 5.103 28 N -0.078 5.078 29 H 0.310 0.690 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.177 0.823 38 H 0.250 0.750 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.026 0.974 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.013 0.987 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.067 0.933 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.676 0.712 -11.974 29.249 hybrid contribution -1.534 0.138 1.177 1.939 sum -28.211 0.850 -10.797 30.218 Atomic orbital electron populations 1.21762 0.94237 1.02202 1.02661 1.21518 0.96794 0.95197 1.02307 1.20376 0.83517 0.98738 1.05869 1.21780 0.96325 1.04530 0.86138 1.21667 0.90196 1.10011 1.00875 1.21724 0.94858 1.12094 0.90607 1.17282 0.82550 0.75653 0.86195 1.90769 1.87394 1.51972 1.14885 1.45925 1.04396 1.72810 1.11448 1.20651 0.82508 0.96496 0.93268 0.92249 1.22246 0.97332 0.96947 1.00288 1.20937 0.88325 0.96504 0.92134 1.44298 1.11244 1.20654 1.57128 1.20200 0.86211 0.91826 1.49294 0.93159 1.27106 1.01999 0.96687 1.01280 1.70844 1.33975 1.18112 1.35614 0.82847 0.72623 0.74917 0.75509 1.19857 1.22149 1.21246 1.20731 0.94718 0.86200 0.93491 1.21161 0.94429 0.96599 0.96195 1.21743 1.01712 0.94650 1.00727 1.21683 1.00886 0.99194 0.96131 1.73483 1.03138 1.19472 1.14182 1.43399 1.02026 1.51435 1.10915 0.69012 0.91582 0.92619 0.92149 0.91919 0.92520 0.88138 0.87876 0.82349 0.75026 0.92141 0.91088 0.97400 0.92569 0.93687 0.92596 0.98687 0.90994 0.92178 0.93573 0.92989 0.93297 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 71.98 0.71 -0.06 16 2 C -0.12 -0.86 5.92 30.60 0.18 -0.68 16 3 C -0.05 -0.29 5.77 29.85 0.17 -0.12 16 4 C 0.04 0.54 6.48 41.40 0.27 0.81 16 5 C -0.20 -4.35 10.73 22.41 0.24 -4.11 16 6 C -0.03 -0.89 7.13 42.45 0.30 -0.58 16 7 C 0.60 19.60 7.79 86.75 0.68 20.27 16 8 O -0.57 -22.79 16.59 -3.96 -0.07 -22.85 16 9 N -0.69 -21.30 4.28 -445.40 -1.91 -23.21 16 10 C 0.18 6.36 1.57 45.02 0.07 6.43 16 11 H 0.06 2.46 7.57 -2.39 -0.02 2.44 16 12 C -0.13 -4.87 5.31 30.67 0.16 -4.70 16 13 C 0.15 6.60 6.52 86.36 0.56 7.17 16 14 N -0.61 -31.00 2.30 -699.94 -1.61 -32.61 16 15 C -0.35 -19.37 9.49 84.03 0.80 -18.57 16 16 H 0.05 2.84 7.94 -2.91 -0.02 2.81 16 17 C -0.07 -4.25 4.68 84.86 0.40 -3.85 16 18 N -0.94 -57.90 12.41 21.65 0.27 -57.64 16 19 Si 1.12 51.37 29.99 68.60 2.06 53.42 16 20 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 23 C 0.17 8.35 3.33 86.22 0.29 8.63 16 24 C -0.08 -3.00 0.56 -52.25 -0.03 -3.03 16 25 C -0.13 -4.13 8.31 71.98 0.60 -3.53 16 26 C -0.12 -4.16 7.82 71.98 0.56 -3.59 16 27 N -0.27 -5.70 11.92 -48.17 -0.57 -6.28 16 28 N -0.36 -4.85 6.83 -47.93 -0.33 -5.17 16 29 H 0.46 2.39 8.96 -220.00 -1.97 0.42 16 30 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 33 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 38 H 0.41 11.02 6.39 -92.71 -0.59 10.42 16 39 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.07 2.63 6.34 -2.39 -0.02 2.61 16 41 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.06 2.49 7.93 -2.38 -0.02 2.47 16 43 H 0.25 16.00 6.71 -92.71 -0.62 15.37 16 44 H 0.06 2.99 6.30 -2.38 -0.02 2.98 16 45 H 0.00 -0.25 7.87 -2.39 -0.02 -0.26 16 46 H 0.07 1.93 7.36 -2.39 -0.02 1.91 16 47 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.05 2.00 5.97 -2.39 -0.01 1.98 16 50 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.07 1.84 6.58 -2.39 -0.02 1.82 16 Total: -1.00 -73.60 398.65 2.33 -71.28 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -1.48 Total: 22.59 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 5.96 Total: 0.47 kcal Atomic # 7 Polarization: -120.76 SS G_CDS: -4.15 Total: -124.91 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.07 Total: -22.85 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.06 Total: 53.42 kcal Total: -73.60 2.33 -71.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940936361.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.490 kcal (2) G-P(sol) polarization free energy of solvation -73.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds