Wall clock time and date at job start Tue Mar 31 2020 18:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47314 * 2 1 4 4 C 1.39670 * 126.06922 * 125.26283 * 3 2 1 5 5 C 1.38407 * 105.36056 * 180.11113 * 4 3 2 6 6 C 1.47162 * 126.88513 * 179.91846 * 5 4 3 7 7 O 1.21629 * 119.99852 * 184.44083 * 6 5 4 8 8 N 1.34770 * 119.99953 * 4.44091 * 6 5 4 9 9 C 1.46502 * 119.99997 * 174.98217 * 8 6 5 10 10 H 1.09005 * 109.44840 * 325.03026 * 9 8 6 11 11 C 1.53041 * 109.46508 * 84.99572 * 9 8 6 12 12 C 1.53191 * 109.31292 * 181.38774 * 11 9 8 13 13 N 1.46930 * 108.77496 * 305.36446 * 12 11 9 14 14 C 1.36938 * 120.62815 * 233.58638 * 13 12 11 15 15 H 1.08003 * 119.99606 * 147.67187 * 14 13 12 16 16 C 1.38807 * 120.00414 * 327.67248 * 14 13 12 17 17 N 1.31624 * 119.99626 * 335.24421 * 16 14 13 18 18 Si 1.86798 * 120.00274 * 155.24795 * 16 14 13 19 19 H 1.48492 * 109.47082 * 59.99680 * 18 16 14 20 20 H 1.48504 * 109.47158 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46995 * 299.99833 * 18 16 14 22 22 C 1.46920 * 118.73873 * 53.86385 * 13 12 11 23 23 C 1.53037 * 109.45838 * 205.06930 * 9 8 6 24 24 C 1.53003 * 109.49849 * 298.55848 * 23 9 8 25 25 C 1.53001 * 109.50336 * 58.66090 * 23 9 8 26 26 N 1.36607 * 106.22914 * 359.65529 * 5 4 3 27 27 C 1.46503 * 125.18887 * 180.25089 * 26 5 4 28 28 N 1.28442 * 109.61604 * 0.22634 * 26 5 4 29 29 H 1.08996 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47266 * 299.99924 * 1 2 3 31 31 H 1.08997 * 109.47395 * 59.99931 * 1 2 3 32 32 H 1.08996 * 109.46809 * 239.99802 * 2 1 3 33 33 H 1.08997 * 109.46926 * 120.00320 * 2 1 3 34 34 H 1.07999 * 127.32122 * 0.02686 * 4 3 2 35 35 H 0.96999 * 120.00647 * 354.97649 * 8 6 5 36 36 H 1.09004 * 109.49296 * 61.43556 * 11 9 8 37 37 H 1.08998 * 109.52035 * 301.35593 * 11 9 8 38 38 H 1.08995 * 109.58073 * 185.58142 * 12 11 9 39 39 H 1.08992 * 109.58467 * 65.15135 * 12 11 9 40 40 H 0.96996 * 119.99981 * 354.13269 * 17 16 14 41 41 H 1.08997 * 109.58761 * 65.92320 * 22 13 12 42 42 H 1.08993 * 109.59080 * 186.35507 * 22 13 12 43 43 H 1.09003 * 109.46642 * 59.99941 * 24 23 9 44 44 H 1.08994 * 109.47220 * 180.02562 * 24 23 9 45 45 H 1.08994 * 109.47209 * 300.00628 * 24 23 9 46 46 H 1.08994 * 109.47031 * 59.99630 * 25 23 9 47 47 H 1.08996 * 109.47448 * 179.97438 * 25 23 9 48 48 H 1.09005 * 109.46662 * 300.00002 * 25 23 9 49 49 H 1.08995 * 109.46728 * 84.36799 * 27 26 5 50 50 H 1.08998 * 109.46507 * 204.37230 * 27 26 5 51 51 H 1.09003 * 109.46520 * 324.37021 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9210 1.9788 0.9218 5 6 3.0842 3.2943 0.5237 6 6 3.9256 4.3146 1.1692 7 8 3.9147 5.4598 0.7597 8 7 4.7082 3.9800 2.2142 9 6 5.6270 4.9670 2.7867 10 1 6.0162 5.6042 1.9925 11 6 4.8800 5.8261 3.8095 12 6 5.8349 6.8791 4.3806 13 7 7.0227 6.1998 4.9158 14 6 7.4315 6.4206 6.2039 15 1 7.9086 5.6286 6.7623 16 6 7.2329 7.6621 6.7921 17 7 7.1223 8.7365 6.0398 18 14 7.1225 7.8081 8.6510 19 1 8.3848 7.3197 9.2617 20 1 6.9090 9.2295 9.0241 21 1 5.9851 6.9910 9.1451 22 6 7.7669 5.2838 4.0408 23 6 6.7871 4.2443 3.4751 24 6 6.2452 3.3765 4.6127 25 6 7.5133 3.3605 2.4591 26 7 2.3124 3.4540 -0.5921 27 6 2.1834 4.6958 -1.3587 28 7 1.7175 2.3493 -0.8667 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 3.3817 1.4884 1.7666 35 1 4.6631 3.0858 2.5873 36 1 4.5118 5.1929 4.6168 37 1 4.0396 6.3222 3.3240 38 1 5.3372 7.4286 5.1795 39 1 6.1331 7.5685 3.5908 40 1 7.2642 8.6748 5.0822 41 1 8.2194 5.8458 3.2238 42 1 8.5443 4.7804 4.6153 43 1 5.5482 2.6421 4.2090 44 1 7.0718 2.8624 5.1030 45 1 5.7293 4.0071 5.3367 46 1 7.9003 3.9798 1.6499 47 1 8.3397 2.8464 2.9497 48 1 6.8174 2.6260 2.0536 49 1 3.0045 4.7696 -2.0716 50 1 1.2349 4.6942 -1.8957 51 1 2.2147 5.5473 -0.6789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941125791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:43 Heat of formation + Delta-G solvation = 46.507467 kcal Electronic energy + Delta-G solvation = -30191.152971 eV Core-core repulsion = 26320.267709 eV Total energy + Delta-G solvation = -3870.885262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.71652 -40.02812 -38.16379 -35.17608 -34.78525 -33.39961 -32.03011 -31.55647 -30.93311 -29.59048 -27.12627 -27.00656 -25.93837 -25.10762 -23.64609 -23.37943 -22.14260 -20.90173 -20.60374 -19.68649 -18.33160 -17.59615 -17.21599 -16.50477 -16.30514 -15.64209 -14.81250 -14.65849 -14.43312 -14.36708 -14.19586 -14.05712 -14.02515 -13.68447 -13.58619 -13.47115 -13.07090 -12.85006 -12.66573 -12.41590 -12.31975 -12.03980 -11.73402 -11.65696 -11.52457 -11.34543 -11.03273 -10.96833 -10.80248 -10.72393 -10.62676 -10.38749 -10.14053 -10.07370 -9.96902 -9.84774 -9.30250 -9.29107 -9.05678 -8.78365 -8.35530 -6.86800 -6.06840 -3.29176 1.15077 2.22989 2.36335 3.17735 3.21672 3.48411 3.51570 3.69659 4.22993 4.43340 4.57459 4.71235 4.88837 4.95525 4.99802 5.07393 5.09774 5.11582 5.22368 5.23584 5.32274 5.36057 5.45389 5.48617 5.52478 5.64504 5.70971 5.73659 5.84587 5.85544 5.93858 5.97266 6.04178 6.13833 6.18496 6.27882 6.29726 6.36800 6.41101 6.51122 6.57451 6.66202 6.69279 6.75632 6.84202 7.03968 7.16688 7.48748 7.89991 8.03559 8.15216 8.57839 9.10488 9.82655 10.29208 11.19971 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.002739 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.245803 B =10218.840320 C =10486.395438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.036 4.036 3 C 0.024 3.976 4 C -0.189 4.189 5 C -0.030 4.030 6 C 0.586 3.414 7 O -0.540 6.540 8 N -0.703 5.703 9 C 0.167 3.833 10 H 0.082 0.918 11 C -0.146 4.146 12 C 0.157 3.843 13 N -0.594 5.594 14 C -0.352 4.352 15 H 0.054 0.946 16 C -0.020 4.020 17 N -0.911 5.911 18 Si 1.063 2.937 19 H -0.293 1.293 20 H -0.286 1.286 21 H -0.293 1.293 22 C 0.161 3.839 23 C -0.089 4.089 24 C -0.131 4.131 25 C -0.138 4.138 26 N -0.258 5.258 27 C 0.087 3.913 28 N -0.277 5.277 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.158 0.842 35 H 0.399 0.601 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.019 0.981 40 H 0.269 0.731 41 H 0.018 0.982 42 H 0.061 0.939 43 H 0.034 0.966 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.048 0.952 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.132 -16.376 -12.261 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C -0.132 4.132 4 C -0.218 4.218 5 C -0.159 4.159 6 C 0.371 3.629 7 O -0.418 6.418 8 N -0.353 5.353 9 C 0.064 3.936 10 H 0.100 0.900 11 C -0.186 4.186 12 C 0.030 3.970 13 N -0.317 5.317 14 C -0.481 4.481 15 H 0.071 0.929 16 C -0.223 4.223 17 N -0.550 5.550 18 Si 0.893 3.107 19 H -0.220 1.220 20 H -0.212 1.212 21 H -0.220 1.220 22 C 0.034 3.966 23 C -0.091 4.091 24 C -0.188 4.188 25 C -0.196 4.196 26 N -0.044 5.044 27 C -0.053 4.053 28 N -0.111 5.111 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.176 0.824 35 H 0.235 0.765 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.037 0.963 40 H 0.080 0.920 41 H 0.036 0.964 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.102 0.898 50 H 0.111 0.889 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.018 -14.101 -12.316 21.234 hybrid contribution 0.783 -1.630 -0.485 1.872 sum -9.235 -15.731 -12.801 22.285 Atomic orbital electron populations 1.21711 0.94621 1.01615 1.02475 1.19862 0.96169 0.88414 1.03002 1.21952 1.00153 0.96681 0.94403 1.22099 1.03999 0.92521 1.03228 1.21530 1.03227 0.96574 0.94547 1.16926 0.79430 0.86248 0.80311 1.90795 1.66295 1.19865 1.64863 1.46026 1.40486 1.16736 1.32096 1.21046 0.88330 0.88865 0.95368 0.90003 1.22524 0.99100 0.99168 0.97785 1.20877 0.87043 0.92146 0.96896 1.44092 1.25832 1.51134 1.10627 1.19872 1.42509 0.97179 0.88554 0.92874 1.25899 0.98954 0.91139 1.06336 1.70773 1.47692 1.28669 1.07871 0.83558 0.76222 0.75725 0.75218 1.21972 1.21154 1.22028 1.21017 0.92091 0.90327 0.93178 1.21444 0.95674 0.96821 0.95183 1.21781 1.00333 0.98390 0.98323 1.21817 0.99964 0.99158 0.98621 1.45546 1.30221 1.09484 1.19185 1.22335 1.04055 0.81877 0.97032 1.73079 1.19828 0.92720 1.25454 0.92315 0.92693 0.92197 0.90542 0.90028 0.82417 0.76548 0.91708 0.92559 0.90524 0.96321 0.91983 0.96426 0.92097 0.94657 0.92938 0.90560 0.92971 0.92533 0.93300 0.89792 0.88866 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.88 37.16 0.37 -0.73 16 2 C -0.04 -0.28 6.51 -27.88 -0.18 -0.46 16 3 C 0.02 0.27 6.49 -82.47 -0.54 -0.26 16 4 C -0.19 -2.11 10.43 -38.98 -0.41 -2.51 16 5 C -0.03 -0.39 6.96 -82.05 -0.57 -0.96 16 6 C 0.59 8.69 7.75 -12.64 -0.10 8.59 16 7 O -0.54 -9.48 14.46 5.25 0.08 -9.41 16 8 N -0.70 -9.60 4.28 -54.92 -0.23 -9.84 16 9 C 0.17 2.74 1.53 -67.89 -0.10 2.63 16 10 H 0.08 1.51 7.65 -51.93 -0.40 1.11 16 11 C -0.15 -2.74 5.31 -26.61 -0.14 -2.88 16 12 C 0.16 3.59 4.77 -3.71 -0.02 3.58 16 13 N -0.59 -14.05 2.21 -172.06 -0.38 -14.43 16 14 C -0.35 -9.39 9.43 -15.06 -0.14 -9.54 16 15 H 0.05 1.43 7.94 -52.48 -0.42 1.01 16 16 C -0.02 -0.56 4.66 -17.43 -0.08 -0.64 16 17 N -0.91 -26.92 12.60 55.49 0.70 -26.22 16 18 Si 1.06 24.75 29.99 -169.99 -5.10 19.66 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.16 3.19 5.24 -3.48 -0.02 3.17 16 23 C -0.09 -1.39 0.56 -154.16 -0.09 -1.48 16 24 C -0.13 -1.96 7.84 37.16 0.29 -1.67 16 25 C -0.14 -1.79 8.31 37.16 0.31 -1.48 16 26 N -0.26 -3.30 3.75 -63.88 -0.24 -3.54 16 27 C 0.09 0.88 10.71 59.85 0.64 1.53 16 28 N -0.28 -3.51 11.87 33.64 0.40 -3.11 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 34 H 0.16 1.32 7.58 -52.49 -0.40 0.92 16 35 H 0.40 4.54 5.69 -40.82 -0.23 4.31 16 36 H 0.06 1.22 6.34 -51.93 -0.33 0.89 16 37 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 38 H 0.08 1.97 6.64 -51.93 -0.34 1.63 16 39 H 0.02 0.45 7.88 -51.93 -0.41 0.04 16 40 H 0.27 8.06 6.92 -40.82 -0.28 7.78 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 43 H 0.03 0.42 6.58 -51.93 -0.34 0.08 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.11 1.23 6.54 -51.93 -0.34 0.89 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -31.66 395.52 -8.05 -39.72 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.46 Total: 4.33 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.78 Total: -3.11 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.24 Total: -57.14 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.10 Total: 19.66 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.66 -8.05 -39.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941125791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.224 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds