Wall clock time and date at job start Tue Mar 31 2020 18:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47314 * 2 1 4 4 C 1.39670 * 126.06922 * 125.26283 * 3 2 1 5 5 C 1.38407 * 105.36056 * 180.11113 * 4 3 2 6 6 C 1.47162 * 126.88513 * 179.91846 * 5 4 3 7 7 O 1.21629 * 119.99852 * 184.44083 * 6 5 4 8 8 N 1.34770 * 119.99953 * 4.44091 * 6 5 4 9 9 C 1.46502 * 119.99997 * 174.98217 * 8 6 5 10 10 H 1.09005 * 109.44840 * 325.03026 * 9 8 6 11 11 C 1.53041 * 109.46508 * 84.99572 * 9 8 6 12 12 C 1.53191 * 109.31292 * 181.38774 * 11 9 8 13 13 N 1.46930 * 108.77496 * 305.36446 * 12 11 9 14 14 C 1.36938 * 120.62815 * 233.58638 * 13 12 11 15 15 H 1.08003 * 119.99606 * 147.67187 * 14 13 12 16 16 C 1.38807 * 120.00414 * 327.67248 * 14 13 12 17 17 N 1.31624 * 119.99626 * 335.24421 * 16 14 13 18 18 Si 1.86798 * 120.00274 * 155.24795 * 16 14 13 19 19 H 1.48492 * 109.47082 * 59.99680 * 18 16 14 20 20 H 1.48504 * 109.47158 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46995 * 299.99833 * 18 16 14 22 22 C 1.46920 * 118.73873 * 53.86385 * 13 12 11 23 23 C 1.53037 * 109.45838 * 205.06930 * 9 8 6 24 24 C 1.53003 * 109.49849 * 298.55848 * 23 9 8 25 25 C 1.53001 * 109.50336 * 58.66090 * 23 9 8 26 26 N 1.36607 * 106.22914 * 359.65529 * 5 4 3 27 27 C 1.46503 * 125.18887 * 180.25089 * 26 5 4 28 28 N 1.28442 * 109.61604 * 0.22634 * 26 5 4 29 29 H 1.08996 * 109.47262 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47266 * 299.99924 * 1 2 3 31 31 H 1.08997 * 109.47395 * 59.99931 * 1 2 3 32 32 H 1.08996 * 109.46809 * 239.99802 * 2 1 3 33 33 H 1.08997 * 109.46926 * 120.00320 * 2 1 3 34 34 H 1.07999 * 127.32122 * 0.02686 * 4 3 2 35 35 H 0.96999 * 120.00647 * 354.97649 * 8 6 5 36 36 H 1.09004 * 109.49296 * 61.43556 * 11 9 8 37 37 H 1.08998 * 109.52035 * 301.35593 * 11 9 8 38 38 H 1.08995 * 109.58073 * 185.58142 * 12 11 9 39 39 H 1.08992 * 109.58467 * 65.15135 * 12 11 9 40 40 H 0.96996 * 119.99981 * 354.13269 * 17 16 14 41 41 H 1.08997 * 109.58761 * 65.92320 * 22 13 12 42 42 H 1.08993 * 109.59080 * 186.35507 * 22 13 12 43 43 H 1.09003 * 109.46642 * 59.99941 * 24 23 9 44 44 H 1.08994 * 109.47220 * 180.02562 * 24 23 9 45 45 H 1.08994 * 109.47209 * 300.00628 * 24 23 9 46 46 H 1.08994 * 109.47031 * 59.99630 * 25 23 9 47 47 H 1.08996 * 109.47448 * 179.97438 * 25 23 9 48 48 H 1.09005 * 109.46662 * 300.00002 * 25 23 9 49 49 H 1.08995 * 109.46728 * 84.36799 * 27 26 5 50 50 H 1.08998 * 109.46507 * 204.37230 * 27 26 5 51 51 H 1.09003 * 109.46520 * 324.37021 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9210 1.9788 0.9218 5 6 3.0842 3.2943 0.5237 6 6 3.9256 4.3146 1.1692 7 8 3.9147 5.4598 0.7597 8 7 4.7082 3.9800 2.2142 9 6 5.6270 4.9670 2.7867 10 1 6.0162 5.6042 1.9925 11 6 4.8800 5.8261 3.8095 12 6 5.8349 6.8791 4.3806 13 7 7.0227 6.1998 4.9158 14 6 7.4315 6.4206 6.2039 15 1 7.9086 5.6286 6.7623 16 6 7.2329 7.6621 6.7921 17 7 7.1223 8.7365 6.0398 18 14 7.1225 7.8081 8.6510 19 1 8.3848 7.3197 9.2617 20 1 6.9090 9.2295 9.0241 21 1 5.9851 6.9910 9.1451 22 6 7.7669 5.2838 4.0408 23 6 6.7871 4.2443 3.4751 24 6 6.2452 3.3765 4.6127 25 6 7.5133 3.3605 2.4591 26 7 2.3124 3.4540 -0.5921 27 6 2.1834 4.6958 -1.3587 28 7 1.7175 2.3493 -0.8667 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 3.3817 1.4884 1.7666 35 1 4.6631 3.0858 2.5873 36 1 4.5118 5.1929 4.6168 37 1 4.0396 6.3222 3.3240 38 1 5.3372 7.4286 5.1795 39 1 6.1331 7.5685 3.5908 40 1 7.2642 8.6748 5.0822 41 1 8.2194 5.8458 3.2238 42 1 8.5443 4.7804 4.6153 43 1 5.5482 2.6421 4.2090 44 1 7.0718 2.8624 5.1030 45 1 5.7293 4.0071 5.3367 46 1 7.9003 3.9798 1.6499 47 1 8.3397 2.8464 2.9497 48 1 6.8174 2.6260 2.0536 49 1 3.0045 4.7696 -2.0716 50 1 1.2349 4.6942 -1.8957 51 1 2.2147 5.5473 -0.6789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941125791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:38 Heat of formation + Delta-G solvation = 27.682473 kcal Electronic energy + Delta-G solvation = -30191.969284 eV Core-core repulsion = 26320.267709 eV Total energy + Delta-G solvation = -3871.701575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.61071 -41.35805 -39.55751 -36.66539 -35.73846 -34.73878 -33.32926 -32.77708 -32.16635 -31.09084 -28.19335 -27.92769 -27.39467 -26.87258 -24.80620 -24.31050 -23.46124 -22.45191 -21.84553 -20.78974 -19.52545 -19.34310 -18.55680 -17.48614 -17.35675 -16.87542 -16.17853 -16.06369 -15.85105 -15.59683 -15.36257 -15.30789 -15.21565 -14.95806 -14.87315 -14.63130 -14.31707 -13.93652 -13.82272 -13.56475 -13.45023 -13.01541 -12.90310 -12.77718 -12.70870 -12.55172 -12.44850 -12.35214 -12.32881 -12.16411 -11.92822 -11.79034 -11.60914 -11.51223 -11.47434 -11.30909 -11.05406 -10.43824 -10.34440 -10.01582 -9.87970 -8.89687 -8.20872 -5.42833 0.16300 1.32576 1.52286 1.59397 1.66702 1.84974 2.09076 2.10890 2.66792 3.23103 3.40394 3.47285 3.54421 3.61365 3.84992 3.93672 3.97045 4.22722 4.24579 4.25131 4.28938 4.32985 4.47645 4.48533 4.51685 4.53650 4.58153 4.70354 4.75659 4.77605 4.84747 4.86259 4.90137 4.96789 5.05491 5.11264 5.13051 5.13674 5.20844 5.25118 5.29121 5.34197 5.38500 5.40967 5.51651 5.63681 5.74407 5.91175 6.36297 6.40565 6.98211 7.06685 7.07236 7.77912 8.25651 9.01472 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.002739 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.245803 B =10218.840320 C =10486.395438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.035 4.035 3 C 0.019 3.981 4 C -0.176 4.176 5 C -0.054 4.054 6 C 0.588 3.412 7 O -0.574 6.574 8 N -0.688 5.688 9 C 0.181 3.819 10 H 0.059 0.941 11 C -0.130 4.130 12 C 0.167 3.833 13 N -0.607 5.607 14 C -0.348 4.348 15 H 0.054 0.946 16 C -0.075 4.075 17 N -0.943 5.943 18 Si 1.112 2.888 19 H -0.274 1.274 20 H -0.297 1.297 21 H -0.278 1.278 22 C 0.156 3.844 23 C -0.076 4.076 24 C -0.126 4.126 25 C -0.131 4.131 26 N -0.268 5.268 27 C 0.085 3.915 28 N -0.292 5.292 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.190 0.810 35 H 0.414 0.586 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.041 0.959 39 H -0.005 1.005 40 H 0.251 0.749 41 H 0.007 0.993 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.090 0.910 50 H 0.112 0.888 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.606 -20.396 -12.157 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.205 4.205 5 C -0.182 4.182 6 C 0.374 3.626 7 O -0.454 6.454 8 N -0.339 5.339 9 C 0.076 3.924 10 H 0.077 0.923 11 C -0.171 4.171 12 C 0.040 3.960 13 N -0.330 5.330 14 C -0.478 4.478 15 H 0.072 0.928 16 C -0.272 4.272 17 N -0.585 5.585 18 Si 0.937 3.063 19 H -0.199 1.199 20 H -0.223 1.223 21 H -0.204 1.204 22 C 0.030 3.970 23 C -0.078 4.078 24 C -0.184 4.184 25 C -0.189 4.189 26 N -0.056 5.056 27 C -0.055 4.055 28 N -0.126 5.126 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.207 0.793 35 H 0.253 0.747 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.013 0.987 40 H 0.061 0.939 41 H 0.024 0.976 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.109 0.891 50 H 0.131 0.869 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.490 -18.191 -12.230 24.301 hybrid contribution 0.920 -0.420 -0.594 1.173 sum -9.570 -18.611 -12.824 24.544 Atomic orbital electron populations 1.21688 0.94569 1.02586 1.01346 1.20033 0.96148 0.86604 1.04609 1.22573 0.99705 0.97742 0.93740 1.22528 1.03032 0.91395 1.03505 1.21404 1.04265 0.97010 0.95559 1.17165 0.79187 0.86132 0.80075 1.90789 1.67334 1.21518 1.65799 1.45675 1.39745 1.16713 1.31798 1.20645 0.88718 0.89068 0.93954 0.92256 1.22295 0.97934 0.98359 0.98465 1.20619 0.87576 0.92784 0.95019 1.44249 1.26552 1.51651 1.10575 1.20128 1.41080 0.96760 0.89797 0.92830 1.27236 0.99056 0.91089 1.09828 1.70904 1.50847 1.29761 1.06947 0.82895 0.77415 0.75229 0.70751 1.19928 1.22350 1.20427 1.21187 0.93035 0.90503 0.92271 1.21260 0.94392 0.95975 0.96222 1.21729 1.01093 0.98358 0.97185 1.21771 1.00662 0.98935 0.97536 1.45772 1.30352 1.10008 1.19426 1.22404 1.05456 0.80877 0.96751 1.73089 1.20151 0.93085 1.26287 0.90314 0.93472 0.93667 0.89670 0.87637 0.79298 0.74676 0.91061 0.93203 0.94041 0.98715 0.93886 0.97553 0.92104 0.90875 0.92232 0.93690 0.93585 0.91124 0.90749 0.89118 0.86920 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.88 71.98 0.71 -1.07 16 2 C -0.04 -0.43 6.51 29.85 0.19 -0.23 16 3 C 0.02 0.36 6.49 43.05 0.28 0.64 16 4 C -0.18 -3.30 10.43 22.66 0.24 -3.06 16 5 C -0.05 -1.33 6.96 40.79 0.28 -1.04 16 6 C 0.59 16.77 7.75 86.59 0.67 17.44 16 7 O -0.57 -20.41 14.46 -4.12 -0.06 -20.47 16 8 N -0.69 -17.28 4.28 -445.93 -1.91 -19.19 16 9 C 0.18 5.80 1.53 45.02 0.07 5.87 16 10 H 0.06 2.22 7.65 -2.38 -0.02 2.20 16 11 C -0.13 -5.00 5.31 30.67 0.16 -4.83 16 12 C 0.17 8.04 4.77 86.36 0.41 8.45 16 13 N -0.61 -29.48 2.21 -698.27 -1.54 -31.02 16 14 C -0.35 -18.86 9.43 84.03 0.79 -18.07 16 15 H 0.05 2.87 7.94 -2.91 -0.02 2.85 16 16 C -0.08 -4.26 4.66 84.86 0.40 -3.86 16 17 N -0.94 -58.14 12.60 21.65 0.27 -57.87 16 18 Si 1.11 50.49 29.99 68.60 2.06 52.55 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 22 C 0.16 6.19 5.24 86.51 0.45 6.64 16 23 C -0.08 -2.25 0.56 -51.95 -0.03 -2.28 16 24 C -0.13 -3.39 7.84 71.98 0.56 -2.83 16 25 C -0.13 -2.98 8.31 71.98 0.60 -2.39 16 26 N -0.27 -6.56 3.75 -356.01 -1.33 -7.90 16 27 C 0.08 1.71 10.71 127.77 1.37 3.07 16 28 N -0.29 -6.90 11.87 -47.50 -0.56 -7.46 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 0.80 8.12 -2.39 -0.02 0.78 16 34 H 0.19 2.16 7.58 -2.91 -0.02 2.14 16 35 H 0.41 7.74 5.69 -92.71 -0.53 7.21 16 36 H 0.07 2.65 6.34 -2.38 -0.02 2.63 16 37 H 0.05 1.96 8.09 -2.39 -0.02 1.94 16 38 H 0.04 2.26 6.64 -2.39 -0.02 2.25 16 39 H -0.01 -0.27 7.88 -2.39 -0.02 -0.29 16 40 H 0.25 15.96 6.92 -92.71 -0.64 15.32 16 41 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 43 H 0.07 1.40 6.58 -2.39 -0.02 1.39 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 45 H 0.04 1.51 5.97 -2.39 -0.01 1.50 16 46 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.07 1.35 7.36 -2.38 -0.02 1.33 16 49 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.09 2.20 6.54 -2.39 -0.02 2.19 16 Total: -1.00 -72.38 395.52 4.61 -67.77 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.52 Total: 21.13 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 7.16 Total: 2.45 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -5.08 Total: -123.43 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.06 Total: -20.47 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 2.06 Total: 52.55 kcal Total: -72.38 4.61 -67.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941125791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.457 kcal (2) G-P(sol) polarization free energy of solvation -72.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds