Wall clock time and date at job start Tue Mar 31 2020 18:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46724 * 2 1 4 4 C 1.35364 * 126.38907 * 85.02849 * 3 2 1 5 5 C 1.41501 * 105.50408 * 179.97438 * 4 3 2 6 6 C 1.47700 * 126.51938 * 179.97438 * 5 4 3 7 7 O 1.21578 * 120.00068 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00201 * 179.72855 * 6 5 4 9 9 C 1.46502 * 120.00184 * 180.02562 * 8 6 5 10 10 H 1.09007 * 109.45934 * 324.99577 * 9 8 6 11 11 C 1.53042 * 109.46159 * 84.96500 * 9 8 6 12 12 C 1.53197 * 109.31053 * 181.38511 * 11 9 8 13 13 N 1.46922 * 108.77700 * 305.36672 * 12 11 9 14 14 C 1.36943 * 120.63260 * 233.63238 * 13 12 11 15 15 H 1.08003 * 120.00048 * 152.63527 * 14 13 12 16 16 C 1.38816 * 119.99613 * 332.63299 * 14 13 12 17 17 N 1.31615 * 119.99587 * 159.33492 * 16 14 13 18 18 Si 1.86800 * 120.00053 * 339.33555 * 16 14 13 19 19 H 1.48501 * 109.47253 * 92.97024 * 18 16 14 20 20 H 1.48501 * 109.46764 * 212.96805 * 18 16 14 21 21 H 1.48500 * 109.47000 * 332.96791 * 18 16 14 22 22 C 1.46926 * 118.73953 * 53.60987 * 13 12 11 23 23 C 1.53042 * 109.46208 * 205.02478 * 9 8 6 24 24 C 1.52998 * 109.49322 * 298.56633 * 23 9 8 25 25 C 1.52997 * 109.49535 * 58.65695 * 23 9 8 26 26 N 1.31814 * 106.96319 * 0.26235 * 5 4 3 27 27 N 1.28468 * 110.06998 * 359.55436 * 26 5 4 28 28 C 1.46502 * 124.88130 * 180.16049 * 27 26 5 29 29 H 1.08999 * 109.47433 * 299.99789 * 1 2 3 30 30 H 1.08996 * 109.47418 * 60.00142 * 1 2 3 31 31 H 1.09005 * 109.47001 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46986 * 239.99604 * 2 1 3 33 33 H 1.09003 * 109.47087 * 119.99697 * 2 1 3 34 34 H 1.08000 * 127.24357 * 359.97438 * 4 3 2 35 35 H 0.96996 * 119.99767 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.50116 * 301.34102 * 11 9 8 37 37 H 1.09004 * 109.49109 * 61.40679 * 11 9 8 38 38 H 1.08991 * 109.58573 * 65.15808 * 12 11 9 39 39 H 1.09003 * 109.58031 * 185.43553 * 12 11 9 40 40 H 0.97001 * 119.99696 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.58643 * 66.17922 * 22 13 12 42 42 H 1.09002 * 109.58783 * 186.45941 * 22 13 12 43 43 H 1.08996 * 109.47918 * 59.99886 * 24 23 9 44 44 H 1.09003 * 109.46869 * 180.02562 * 24 23 9 45 45 H 1.09007 * 109.47236 * 299.99317 * 24 23 9 46 46 H 1.08996 * 109.47132 * 60.00699 * 25 23 9 47 47 H 1.09006 * 109.46871 * 180.02562 * 25 23 9 48 48 H 1.08996 * 109.47824 * 300.00206 * 25 23 9 49 49 H 1.09002 * 109.47374 * 270.34301 * 28 27 26 50 50 H 1.09000 * 109.47263 * 30.34486 * 28 27 26 51 51 H 1.09004 * 109.47140 * 150.33582 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2108 2.2095 1.0856 5 6 2.6932 3.4412 0.5831 6 6 3.0426 4.6375 1.3757 7 8 2.9238 4.6211 2.5856 8 7 3.4979 5.7456 0.7583 9 6 3.8450 6.9320 1.5446 10 1 3.1649 7.0178 2.3921 11 6 5.2820 6.8029 2.0552 12 6 5.6296 8.0289 2.9055 13 7 5.3771 9.2405 2.1137 14 6 6.3564 10.1837 1.9500 15 1 6.3611 10.8101 1.0702 16 6 7.3430 10.3345 2.9148 17 7 8.4821 10.9169 2.6057 18 14 7.0539 9.7109 4.6518 19 1 7.5810 8.3281 4.7754 20 1 7.7532 10.5955 5.6180 21 1 5.5976 9.7134 4.9426 22 6 4.0542 9.4208 1.5006 23 6 3.7245 8.1793 0.6660 24 6 4.7040 8.0757 -0.5048 25 6 2.2960 8.2896 0.1292 26 7 2.7655 3.3200 -0.7275 27 7 2.3886 2.1444 -1.0830 28 6 2.3450 1.6609 -2.4652 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0244 1.9526 2.1179 35 1 3.5964 5.7574 -0.2065 36 1 5.3730 5.9018 2.6617 37 1 5.9649 6.7417 1.2079 38 1 5.0077 8.0410 3.8005 39 1 6.6807 7.9890 3.1914 40 1 9.1713 11.0227 3.2800 41 1 3.3037 9.5465 2.2811 42 1 4.0656 10.3022 0.8594 43 1 4.4707 7.1907 -1.0966 44 1 4.6181 8.9644 -1.1300 45 1 5.7215 7.9986 -0.1215 46 1 1.5990 8.3648 0.9638 47 1 2.2107 9.1778 -0.4969 48 1 2.0606 7.4048 -0.4621 49 1 1.3691 1.8828 -2.8972 50 1 3.1215 2.1562 -3.0481 51 1 2.5120 0.5838 -2.4788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941252942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:01 Heat of formation + Delta-G solvation = 59.489206 kcal Electronic energy + Delta-G solvation = -30038.510732 eV Core-core repulsion = 26168.188400 eV Total energy + Delta-G solvation = -3870.322332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.89401 -39.93287 -38.08982 -34.83522 -34.68557 -33.64022 -33.05150 -31.67115 -30.26647 -29.55719 -27.77731 -26.89369 -26.30690 -25.11468 -24.05131 -23.10567 -21.83331 -21.14426 -20.93223 -19.57468 -18.32440 -17.32085 -16.78740 -16.57962 -16.42245 -15.81452 -15.01484 -14.84013 -14.67872 -14.45077 -14.29064 -13.99074 -13.84267 -13.69165 -13.56145 -13.32245 -13.08117 -12.96642 -12.76080 -12.63597 -12.31658 -12.05870 -11.96791 -11.71937 -11.59368 -11.58575 -11.24078 -11.17949 -10.95572 -10.76629 -10.47094 -10.33164 -10.12812 -9.94107 -9.86000 -9.60253 -9.43654 -9.30208 -9.13812 -8.66962 -8.51834 -6.91615 -5.89837 -3.25079 1.49186 1.94079 2.19905 3.35814 3.40183 3.53156 3.55509 3.59772 4.08772 4.17116 4.44636 4.59529 4.61417 4.71154 4.81077 4.90473 4.97629 5.01791 5.06472 5.13976 5.29144 5.32806 5.33055 5.43443 5.47898 5.49545 5.69619 5.77279 5.79666 5.80409 5.90962 5.98119 6.08266 6.17964 6.23057 6.26402 6.33282 6.39082 6.47984 6.51956 6.55569 6.67975 6.70742 6.75782 6.83369 6.86606 7.07774 7.59263 7.87092 8.01274 8.37666 8.41200 8.99145 9.77794 10.15660 11.26012 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021404 B = 0.002763 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.872543 B =10132.945918 C =10621.828620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C 0.009 3.991 4 C -0.177 4.177 5 C -0.009 4.009 6 C 0.600 3.400 7 O -0.535 6.535 8 N -0.706 5.706 9 C 0.163 3.837 10 H 0.084 0.916 11 C -0.144 4.144 12 C 0.129 3.871 13 N -0.603 5.603 14 C -0.256 4.256 15 H 0.086 0.914 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 0.881 3.119 19 H -0.289 1.289 20 H -0.305 1.305 21 H -0.270 1.270 22 C 0.163 3.837 23 C -0.089 4.089 24 C -0.133 4.133 25 C -0.137 4.137 26 N -0.263 5.263 27 N -0.282 5.282 28 C 0.085 3.915 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.160 0.840 35 H 0.402 0.598 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.262 0.738 41 H 0.025 0.975 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.052 0.948 45 H 0.076 0.924 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 -22.312 -11.309 29.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.115 4.115 4 C -0.205 4.205 5 C -0.169 4.169 6 C 0.383 3.617 7 O -0.410 6.410 8 N -0.357 5.357 9 C 0.059 3.941 10 H 0.102 0.898 11 C -0.185 4.185 12 C 0.003 3.997 13 N -0.326 5.326 14 C -0.384 4.384 15 H 0.103 0.897 16 C -0.176 4.176 17 N -0.552 5.552 18 Si 0.711 3.289 19 H -0.216 1.216 20 H -0.233 1.233 21 H -0.194 1.194 22 C 0.036 3.964 23 C -0.091 4.091 24 C -0.190 4.190 25 C -0.195 4.195 26 N -0.098 5.098 27 N -0.071 5.071 28 C -0.055 4.055 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.178 0.822 35 H 0.238 0.762 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.093 0.907 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.102 0.898 50 H 0.116 0.884 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.849 -21.655 -11.483 29.189 hybrid contribution -0.161 -0.827 1.141 1.419 sum -16.010 -22.482 -10.342 29.474 Atomic orbital electron populations 1.21764 0.94001 1.02163 1.02662 1.20105 0.96450 0.88782 1.03801 1.21366 1.06207 0.96972 0.86920 1.21504 1.06847 0.92479 0.99626 1.22015 1.08112 0.97026 0.89755 1.16904 0.77131 0.81258 0.86363 1.90795 1.54449 1.82626 1.13122 1.46134 1.65201 1.13067 1.11322 1.21001 0.96778 0.82647 0.93645 0.89838 1.22467 0.95716 0.99342 1.00936 1.21310 1.00079 0.85433 0.92902 1.44357 1.09648 1.18802 1.59812 1.18891 1.02657 1.13325 1.03553 0.89665 1.25262 0.96244 0.98178 0.97871 1.69837 1.04642 1.46978 1.33770 0.86985 0.78389 0.76918 0.86590 1.21633 1.23295 1.19446 1.20946 0.87046 0.94077 0.94358 1.21338 0.95113 0.96212 0.96465 1.21801 1.00878 0.99903 0.96404 1.21803 0.95809 1.01208 1.00665 1.73538 1.18627 1.02613 1.15048 1.45285 1.45871 1.08170 1.07751 1.22145 1.04801 1.00977 0.77597 0.91834 0.92796 0.91749 0.90802 0.89114 0.82193 0.76156 0.92331 0.91155 0.95500 0.90749 0.92853 0.95739 0.91389 0.94492 0.92846 0.90485 0.92914 0.92516 0.93198 0.89779 0.88408 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.89 37.16 0.37 -0.35 16 2 C -0.05 -0.28 6.21 -27.88 -0.17 -0.46 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -2.16 10.73 -39.36 -0.42 -2.58 16 5 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 6 C 0.60 9.96 7.79 -12.40 -0.10 9.87 16 7 O -0.53 -10.50 16.59 5.30 0.09 -10.41 16 8 N -0.71 -10.92 4.29 -54.75 -0.23 -11.15 16 9 C 0.16 2.83 1.57 -67.89 -0.11 2.72 16 10 H 0.08 1.59 7.58 -51.92 -0.39 1.19 16 11 C -0.14 -2.82 5.31 -26.61 -0.14 -2.96 16 12 C 0.13 2.94 4.20 -3.71 -0.02 2.92 16 13 N -0.60 -14.27 2.21 -172.32 -0.38 -14.65 16 14 C -0.26 -7.09 10.04 -15.05 -0.15 -7.24 16 15 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 16 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 17 N -0.91 -28.03 13.97 55.49 0.78 -27.26 16 18 Si 0.88 22.98 24.35 -169.99 -4.14 18.84 16 19 H -0.29 -7.36 6.62 56.52 0.37 -6.98 16 20 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 21 H -0.27 -6.95 6.63 56.52 0.37 -6.58 16 22 C 0.16 3.19 5.20 -3.71 -0.02 3.17 16 23 C -0.09 -1.45 0.56 -154.39 -0.09 -1.54 16 24 C -0.13 -2.13 7.83 37.16 0.29 -1.84 16 25 C -0.14 -1.87 8.31 37.16 0.31 -1.56 16 26 N -0.26 -3.32 11.67 33.42 0.39 -2.93 16 27 N -0.28 -2.69 3.70 -63.85 -0.24 -2.93 16 28 C 0.09 0.39 11.11 59.85 0.66 1.06 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.26 6.86 -51.93 -0.36 -0.10 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.40 5.63 6.39 -40.82 -0.26 5.37 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.38 6.34 -51.93 -0.33 1.05 16 38 H 0.03 0.62 7.08 -51.93 -0.37 0.26 16 39 H 0.07 1.85 4.50 -51.93 -0.23 1.62 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 43 H 0.04 0.51 6.58 -51.93 -0.34 0.17 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 1.47 5.97 -51.92 -0.31 1.16 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.64 7.36 -51.93 -0.38 0.25 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.09 0.20 6.88 -51.93 -0.36 -0.16 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -34.35 391.83 -7.03 -41.38 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.43 Total: 2.56 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -0.77 Total: 0.66 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.31 Total: -58.93 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.14 Total: 18.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.35 -7.03 -41.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941252942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.872 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds