Wall clock time and date at job start Tue Mar 31 2020 18:05:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50696 * 109.47090 * 2 1
4 4 C 1.35365 * 126.38639 * 85.02719 * 3 2 1
5 5 C 1.41504 * 105.50592 * 179.97438 * 4 3 2
6 6 C 1.47706 * 126.52136 * 179.97438 * 5 4 3
7 7 O 1.21578 * 119.99922 * 0.02562 * 6 5 4
8 8 N 1.34772 * 120.00049 * 179.97438 * 6 5 4
9 9 C 1.46510 * 119.99685 * 179.97438 * 8 6 5
10 10 H 1.08996 * 109.45010 * 34.96573 * 9 8 6
11 11 C 1.53042 * 109.46107 * 274.99924 * 9 8 6
12 12 C 1.53187 * 109.31207 * 178.61481 * 11 9 8
13 13 N 1.46920 * 108.77436 * 54.64066 * 12 11 9
14 14 C 1.36940 * 120.63357 * 126.36916 * 13 12 11
15 15 H 1.07997 * 119.99487 * 332.50127 * 14 13 12
16 16 C 1.38809 * 120.00020 * 152.50088 * 14 13 12
17 17 N 1.31625 * 120.00314 * 335.02519 * 16 14 13
18 18 Si 1.86803 * 119.99831 * 155.01934 * 16 14 13
19 19 H 1.48499 * 109.47125 * 0.02562 * 18 16 14
20 20 H 1.48505 * 109.46931 * 120.00189 * 18 16 14
21 21 H 1.48496 * 109.47273 * 240.00296 * 18 16 14
22 22 C 1.46928 * 118.73646 * 306.63846 * 13 12 11
23 23 C 1.52758 * 109.00696 * 53.31210 * 22 13 12
24 24 C 1.53008 * 109.56365 * 185.55200 * 23 22 13
25 25 C 1.53000 * 109.36148 * 65.50161 * 23 22 13
26 26 N 1.31806 * 106.96120 * 0.24112 * 5 4 3
27 27 N 1.28467 * 110.07726 * 359.59223 * 26 5 4
28 28 C 1.46504 * 124.89082 * 180.13042 * 27 26 5
29 29 H 1.08994 * 109.47072 * 299.99864 * 1 2 3
30 30 H 1.09002 * 109.47038 * 59.99810 * 1 2 3
31 31 H 1.09004 * 109.47480 * 179.97438 * 1 2 3
32 32 H 1.09008 * 109.47012 * 240.00215 * 2 1 3
33 33 H 1.08995 * 109.47686 * 120.00100 * 2 1 3
34 34 H 1.07998 * 127.24878 * 0.02562 * 4 3 2
35 35 H 0.96993 * 120.00740 * 0.02562 * 8 6 5
36 36 H 1.09009 * 109.49443 * 58.66552 * 11 9 8
37 37 H 1.09000 * 109.52639 * 298.58930 * 11 9 8
38 38 H 1.08996 * 109.58664 * 294.84755 * 12 11 9
39 39 H 1.09010 * 109.69962 * 174.49157 * 12 11 9
40 40 H 0.96998 * 119.99686 * 354.25090 * 17 16 14
41 41 H 1.09007 * 109.58583 * 173.14684 * 22 13 12
42 42 H 1.08998 * 109.58571 * 293.57108 * 22 13 12
43 43 H 1.08993 * 109.46867 * 179.97438 * 24 23 22
44 44 H 1.09000 * 109.47068 * 299.96429 * 24 23 22
45 45 H 1.08999 * 109.46973 * 59.96212 * 24 23 22
46 46 H 1.09003 * 109.46779 * 300.15859 * 25 23 22
47 47 H 1.09000 * 109.47414 * 60.15575 * 25 23 22
48 48 H 1.08998 * 109.47633 * 180.16095 * 25 23 22
49 49 H 1.08999 * 109.46813 * 270.33289 * 28 27 26
50 50 H 1.09003 * 109.46677 * 30.32706 * 28 27 26
51 51 H 1.08999 * 109.47323 * 150.32845 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2109 2.2094 1.0856
5 6 2.6934 3.4411 0.5832
6 6 3.0429 4.6374 1.3760
7 8 2.9249 4.6206 2.5859
8 7 3.4935 5.7472 0.7582
9 6 3.8396 6.9339 1.5445
10 1 4.2681 6.6253 2.4980
11 6 2.5787 7.7638 1.7970
12 6 2.9383 8.9854 2.6485
13 7 4.0225 9.7219 1.9847
14 6 3.8950 11.0585 1.7152
15 1 2.9157 11.4876 1.5630
16 6 5.0245 11.8616 1.6376
17 7 6.1236 11.5150 2.2736
18 14 4.9848 13.4344 0.6305
19 1 3.6414 13.5966 0.0187
20 1 5.2697 14.5945 1.5128
21 1 6.0114 13.3628 -0.4401
22 6 5.2437 8.9958 1.6100
23 6 4.8604 7.7753 0.7752
24 6 6.1076 6.9344 0.4946
25 6 4.2475 8.2381 -0.5481
26 7 2.7661 3.3198 -0.7272
27 7 2.3887 2.1445 -1.0830
28 6 2.3448 1.6610 -2.4652
29 1 -0.3633 0.5138 0.8899
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8933 -0.5138 -0.8901
33 1 1.8934 -0.5138 0.8899
34 1 2.0251 1.9523 2.1180
35 1 3.5880 5.7605 -0.2071
36 1 1.8431 7.1564 2.3245
37 1 2.1629 8.0935 0.8449
38 1 3.2686 8.6590 3.6346
39 1 2.0665 9.6317 2.7505
40 1 6.1204 10.7445 2.8628
41 1 5.8917 9.6483 1.0248
42 1 5.7658 8.6704 2.5098
43 1 5.8323 6.0639 -0.1007
44 1 6.8344 7.5341 -0.0534
45 1 6.5444 6.6065 1.4378
46 1 3.3600 8.8382 -0.3471
47 1 4.9749 8.8373 -1.0957
48 1 3.9707 7.3685 -1.1441
49 1 1.3689 1.8833 -2.8970
50 1 3.1213 2.1563 -3.0482
51 1 2.5114 0.5839 -2.4789
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000941252943.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:05:11
Heat of formation + Delta-G solvation = 30.068353 kcal
Electronic energy + Delta-G solvation = -30036.977432 eV
Core-core repulsion = 26165.379316 eV
Total energy + Delta-G solvation = -3871.598116 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 4.24 seconds
Orbital eigenvalues (eV)
-43.72635 -41.36948 -39.57160 -36.52512 -35.37011 -34.45561 -34.24955 -33.88220
-31.14635 -30.27349 -28.55871 -28.24797 -27.79210 -26.61736 -24.72522 -24.42816
-23.25176 -22.46799 -21.87812 -20.72699 -19.66063 -19.36877 -18.16911 -17.57426
-17.35155 -17.02055 -16.34400 -15.99181 -15.97478 -15.47537 -15.44149 -15.34693
-15.09207 -15.04604 -14.77926 -14.33275 -14.16668 -14.02863 -13.69852 -13.62229
-13.43391 -13.23826 -13.02612 -12.95722 -12.70760 -12.55410 -12.51240 -12.46572
-12.15912 -12.04380 -11.88129 -11.82259 -11.74075 -11.71388 -11.42863 -11.34657
-11.06483 -10.45739 -10.26130 -9.95998 -9.94496 -8.92562 -8.22798 -5.37182
0.48534 1.08633 1.54005 1.59758 1.67217 1.83425 2.12476 2.33009
2.66457 3.22518 3.28702 3.50712 3.59526 3.60230 3.84331 3.91968
3.97085 4.11823 4.22109 4.30321 4.32329 4.42316 4.43825 4.48511
4.52026 4.53911 4.65620 4.68060 4.72471 4.74181 4.80407 4.81274
4.86704 4.92642 4.98648 5.06573 5.08572 5.11594 5.17756 5.19522
5.25888 5.29671 5.34349 5.38086 5.44854 5.57462 5.85993 5.86974
6.40725 6.42735 6.87918 7.05578 7.13922 7.78961 8.23730 9.02600
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.025485 B = 0.002562 C = 0.002492
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1098.428359 B =10925.736994 C =11231.810855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.050 4.050
3 C 0.028 3.972
4 C -0.204 4.204
5 C -0.041 4.041
6 C 0.599 3.401
7 O -0.574 6.574
8 N -0.695 5.695
9 C 0.175 3.825
10 H 0.059 0.941
11 C -0.128 4.128
12 C 0.148 3.852
13 N -0.609 5.609
14 C -0.346 4.346
15 H 0.050 0.950
16 C -0.074 4.074
17 N -0.943 5.943
18 Si 1.116 2.884
19 H -0.274 1.274
20 H -0.294 1.294
21 H -0.285 1.285
22 C 0.174 3.826
23 C -0.081 4.081
24 C -0.130 4.130
25 C -0.121 4.121
26 N -0.273 5.273
27 N -0.273 5.273
28 C 0.071 3.929
29 H 0.046 0.954
30 H 0.053 0.947
31 H 0.084 0.916
32 H 0.104 0.896
33 H 0.099 0.901
34 H 0.157 0.843
35 H 0.411 0.589
36 H 0.059 0.941
37 H 0.070 0.930
38 H 0.008 0.992
39 H 0.056 0.944
40 H 0.253 0.747
41 H 0.057 0.943
42 H -0.005 1.005
43 H 0.070 0.930
44 H 0.060 0.940
45 H 0.045 0.955
46 H 0.051 0.949
47 H 0.049 0.951
48 H 0.066 0.934
49 H 0.101 0.899
50 H 0.103 0.897
51 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.157 -27.053 -13.258 31.488
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.089 4.089
3 C -0.098 4.098
4 C -0.232 4.232
5 C -0.199 4.199
6 C 0.385 3.615
7 O -0.452 6.452
8 N -0.346 5.346
9 C 0.071 3.929
10 H 0.077 0.923
11 C -0.168 4.168
12 C 0.022 3.978
13 N -0.333 5.333
14 C -0.476 4.476
15 H 0.068 0.932
16 C -0.270 4.270
17 N -0.585 5.585
18 Si 0.941 3.059
19 H -0.199 1.199
20 H -0.221 1.221
21 H -0.212 1.212
22 C 0.048 3.952
23 C -0.083 4.083
24 C -0.188 4.188
25 C -0.178 4.178
26 N -0.110 5.110
27 N -0.062 5.062
28 C -0.067 4.067
29 H 0.065 0.935
30 H 0.072 0.928
31 H 0.103 0.897
32 H 0.122 0.878
33 H 0.117 0.883
34 H 0.174 0.826
35 H 0.249 0.751
36 H 0.077 0.923
37 H 0.089 0.911
38 H 0.026 0.974
39 H 0.074 0.926
40 H 0.063 0.937
41 H 0.075 0.925
42 H 0.013 0.987
43 H 0.089 0.911
44 H 0.079 0.921
45 H 0.064 0.936
46 H 0.070 0.930
47 H 0.068 0.932
48 H 0.085 0.915
49 H 0.119 0.881
50 H 0.121 0.879
51 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -8.056 -25.206 -14.057 29.964
hybrid contribution -0.900 -1.087 1.617 2.147
sum -8.956 -26.293 -12.439 30.435
Atomic orbital electron populations
1.21754 0.93560 1.03253 1.01874 1.20296 0.96628 0.86222 1.05707
1.21874 1.03959 0.98128 0.85799 1.21663 1.08300 0.92567 1.00666
1.21689 1.10805 0.96782 0.90627 1.17267 0.76314 0.81782 0.86141
1.90758 1.55674 1.83851 1.14917 1.45919 1.65263 1.11987 1.11418
1.20656 0.94677 0.83645 0.93948 0.92306 1.22249 0.97166 0.96496
1.00921 1.20927 0.91481 0.92405 0.93016 1.44296 1.15801 1.05671
1.67548 1.20199 0.95021 0.85393 1.46988 0.93182 1.27117 0.93644
1.05204 1.01057 1.70844 1.31471 1.28542 1.27648 0.82846 0.75888
0.72117 0.75033 1.19885 1.22115 1.21181 1.20741 0.88591 0.91371
0.94497 1.21154 0.95283 0.95189 0.96678 1.21739 0.96315 0.99372
1.01377 1.21671 1.00877 1.00448 0.94794 1.73458 1.19213 1.04318
1.14041 1.45807 1.43736 1.07109 1.09573 1.22653 1.06112 1.02981
0.74998 0.93526 0.92785 0.89698 0.87774 0.88306 0.82556 0.75104
0.92265 0.91121 0.97414 0.92558 0.93682 0.92482 0.98663 0.91115
0.92080 0.93586 0.93033 0.93212 0.91519 0.88081 0.87875 0.85442
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.05 9.89 71.98 0.71 -0.33 16
2 C -0.05 -0.37 6.21 29.85 0.19 -0.18 16
3 C 0.03 0.46 6.17 41.40 0.26 0.71 16
4 C -0.20 -4.97 10.73 22.41 0.24 -4.73 16
5 C -0.04 -1.18 7.13 42.46 0.30 -0.88 16
6 C 0.60 20.71 7.79 86.75 0.68 21.38 16
7 O -0.57 -23.77 16.59 -3.96 -0.07 -23.84 16
8 N -0.70 -22.28 4.28 -445.40 -1.91 -24.19 16
9 C 0.18 6.53 1.57 45.02 0.07 6.60 16
10 H 0.06 2.49 7.57 -2.39 -0.02 2.48 16
11 C -0.13 -4.99 5.31 30.67 0.16 -4.83 16
12 C 0.15 6.73 6.52 86.36 0.56 7.29 16
13 N -0.61 -31.28 2.30 -699.94 -1.61 -32.89 16
14 C -0.35 -19.53 9.49 84.03 0.80 -18.73 16
15 H 0.05 2.84 7.94 -2.91 -0.02 2.82 16
16 C -0.07 -4.24 4.68 84.86 0.40 -3.84 16
17 N -0.94 -58.05 12.41 21.65 0.27 -57.78 16
18 Si 1.12 51.51 29.99 68.60 2.06 53.57 16
19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
21 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16
22 C 0.17 8.40 3.33 86.22 0.29 8.68 16
23 C -0.08 -3.02 0.56 -52.25 -0.03 -3.05 16
24 C -0.13 -4.20 8.31 71.98 0.60 -3.61 16
25 C -0.12 -4.19 7.82 71.98 0.56 -3.62 16
26 N -0.27 -6.64 11.67 -48.18 -0.56 -7.20 16
27 N -0.27 -4.58 3.70 -355.91 -1.32 -5.89 16
28 C 0.07 0.40 11.11 127.77 1.42 1.82 16
29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16
31 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16
32 H 0.10 0.19 6.86 -2.38 -0.02 0.17 16
33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16
34 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16
35 H 0.41 11.62 6.39 -92.71 -0.59 11.03 16
36 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16
37 H 0.07 2.68 6.34 -2.39 -0.02 2.66 16
38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16
39 H 0.06 2.53 7.93 -2.38 -0.02 2.51 16
40 H 0.25 16.05 6.71 -92.71 -0.62 15.43 16
41 H 0.06 3.07 6.30 -2.38 -0.02 3.05 16
42 H 0.00 -0.24 7.87 -2.39 -0.02 -0.25 16
43 H 0.07 1.96 7.36 -2.39 -0.02 1.94 16
44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
45 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16
46 H 0.05 2.01 5.97 -2.39 -0.01 2.00 16
47 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16
48 H 0.07 1.86 6.58 -2.39 -0.02 1.84 16
49 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16
50 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16
51 H 0.13 -0.11 6.87 -2.39 -0.02 -0.13 16
Total: -1.00 -76.44 397.20 4.55 -71.90
By element:
Atomic # 1 Polarization: 23.17 SS G_CDS: 0.48 Total: 23.65 kcal
Atomic # 6 Polarization: -4.52 SS G_CDS: 7.20 Total: 2.68 kcal
Atomic # 7 Polarization: -122.83 SS G_CDS: -5.13 Total: -127.96 kcal
Atomic # 8 Polarization: -23.77 SS G_CDS: -0.07 Total: -23.84 kcal
Atomic # 14 Polarization: 51.51 SS G_CDS: 2.06 Total: 53.57 kcal
Total: -76.44 4.55 -71.90 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000941252943.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.966 kcal
(2) G-P(sol) polarization free energy of solvation -76.444 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.897 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.068 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.24 seconds