Wall clock time and date at job start Tue Mar 31 2020 19:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46875 * 2 1 4 4 C 1.50693 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.38048 * 126.29331 * 270.00614 * 4 3 2 6 6 C 1.47426 * 126.41237 * 359.93064 * 5 4 3 7 7 O 1.21609 * 120.00233 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99918 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00041 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.45653 * 325.02716 * 9 8 6 11 11 C 1.53038 * 109.46040 * 84.99911 * 9 8 6 12 12 C 1.53195 * 109.31380 * 58.65355 * 11 9 8 13 13 N 1.46925 * 108.77181 * 54.63375 * 12 11 9 14 14 C 1.36941 * 120.63250 * 126.37087 * 13 12 11 15 15 H 1.08005 * 119.99378 * 332.80085 * 14 13 12 16 16 C 1.38809 * 120.00409 * 152.79853 * 14 13 12 17 17 N 1.31624 * 119.99981 * 159.75741 * 16 14 13 18 18 Si 1.86797 * 119.99997 * 339.76496 * 16 14 13 19 19 H 1.48503 * 109.47062 * 94.89523 * 18 16 14 20 20 H 1.48496 * 109.46907 * 214.89722 * 18 16 14 21 21 H 1.48502 * 109.46899 * 334.89738 * 18 16 14 22 22 C 1.46927 * 118.73992 * 306.39328 * 13 12 11 23 23 C 1.53031 * 109.45899 * 205.06797 * 9 8 6 24 24 H 1.09005 * 109.49981 * 181.39277 * 23 9 8 25 25 C 1.53004 * 109.49955 * 61.29777 * 23 9 8 26 26 C 1.41291 * 107.16871 * 179.97438 * 5 4 3 27 27 N 1.30435 * 108.02675 * 359.97438 * 26 5 4 28 28 N 1.34259 * 126.29063 * 89.68831 * 4 3 2 29 29 C 1.46505 * 125.75533 * 0.02562 * 28 4 3 30 30 H 1.09001 * 109.47561 * 300.00034 * 1 2 3 31 31 H 1.08999 * 109.46989 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47434 * 59.99987 * 1 2 3 33 33 H 1.08999 * 109.46818 * 119.99627 * 2 1 3 34 34 H 1.08991 * 109.47056 * 240.00146 * 2 1 3 35 35 H 1.09003 * 109.47100 * 300.00217 * 3 2 1 36 36 H 1.09001 * 109.47054 * 59.99655 * 3 2 1 37 37 H 0.96997 * 119.99835 * 359.97438 * 8 6 5 38 38 H 1.08998 * 109.49789 * 178.60940 * 11 9 8 39 39 H 1.09001 * 109.50071 * 298.70506 * 11 9 8 40 40 H 1.08994 * 109.59199 * 174.41945 * 12 11 9 41 41 H 1.09000 * 109.58733 * 294.84939 * 12 11 9 42 42 H 0.96996 * 119.99914 * 180.02562 * 17 16 14 43 43 H 1.09005 * 109.58448 * 173.39348 * 22 13 12 44 44 H 1.09002 * 109.58826 * 293.81593 * 22 13 12 45 45 H 1.08994 * 109.47253 * 59.99565 * 25 23 9 46 46 H 1.08994 * 109.47167 * 179.97438 * 25 23 9 47 47 H 1.09000 * 109.47131 * 299.99997 * 25 23 9 48 48 H 1.08000 * 125.98319 * 180.02562 * 26 5 4 49 49 H 1.08992 * 109.46910 * 89.99711 * 29 28 4 50 50 H 1.08994 * 109.46900 * 210.00159 * 29 28 4 51 51 H 1.09001 * 109.46578 * 329.99801 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3636 1.4427 1.1136 6 6 3.9247 1.4442 2.5211 7 8 2.7383 1.4450 2.7881 8 7 4.8384 1.4446 3.5119 9 6 4.4023 1.4455 4.9105 10 1 3.4904 2.0348 5.0061 11 6 4.1302 0.0083 5.3606 12 6 5.4045 -0.8252 5.1925 13 7 6.5005 -0.1641 5.9140 14 6 7.2395 -0.8498 6.8408 15 1 6.8020 -1.6828 7.3711 16 6 8.5507 -0.4745 7.0986 17 7 9.1298 -0.8365 8.2238 18 14 9.4935 0.5445 5.8487 19 1 9.3842 1.9834 6.1996 20 1 10.9223 0.1401 5.8570 21 1 8.9234 0.3201 4.4960 22 6 6.7883 1.2470 5.6226 23 6 5.4984 2.0571 5.7859 24 1 5.1849 2.0356 6.8296 25 6 5.7467 3.5045 5.3564 26 6 5.6987 1.4421 0.6513 27 7 5.6742 1.4412 -0.6528 28 7 4.3420 1.4366 -1.0812 29 6 3.8910 1.4293 -2.4751 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 5.7847 1.4435 3.2989 38 1 3.8295 0.0060 6.4083 39 1 3.3332 -0.4189 4.7520 40 1 5.2459 -1.8223 5.6032 41 1 5.6558 -0.8992 4.1345 42 1 10.0459 -0.5739 8.4041 43 1 7.5426 1.6170 6.3171 44 1 7.1525 1.3420 4.5997 45 1 4.8280 4.0799 5.4700 46 1 6.5271 3.9399 5.9805 47 1 6.0616 3.5251 4.3131 48 1 6.5843 1.4416 1.2695 49 1 3.7794 2.4551 -2.8261 50 1 4.6257 0.9119 -3.0919 51 1 2.9322 0.9154 -2.5439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942218683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:05 Heat of formation + Delta-G solvation = 48.797024 kcal Electronic energy + Delta-G solvation = -30542.249737 eV Core-core repulsion = 26671.463757 eV Total energy + Delta-G solvation = -3870.785980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.63909 -39.65375 -37.63323 -35.50686 -34.25014 -33.52139 -32.29338 -31.85725 -30.85158 -30.14307 -27.46764 -26.71978 -26.11366 -25.15905 -23.05201 -22.28724 -21.94289 -20.88983 -20.75723 -19.65325 -18.74001 -17.71246 -16.82893 -16.07380 -15.91641 -15.58413 -15.10702 -14.99098 -14.75939 -14.65598 -14.15929 -13.91448 -13.75333 -13.55924 -13.38426 -13.34264 -13.14829 -12.96674 -12.78837 -12.68623 -12.45672 -12.17947 -11.89283 -11.70270 -11.51284 -11.49130 -11.31427 -11.15518 -11.08728 -10.75950 -10.66050 -10.46836 -10.19896 -9.99584 -9.66967 -9.60963 -9.55122 -9.44559 -8.83974 -8.61180 -8.50961 -6.96116 -5.94343 -3.30057 1.41089 2.12050 2.14597 3.30315 3.46330 3.48671 3.54329 3.62260 4.22723 4.27435 4.51984 4.62697 4.74054 4.80385 4.83893 4.94221 5.01030 5.03084 5.09553 5.11375 5.28530 5.33551 5.38265 5.40415 5.49228 5.49713 5.59475 5.68829 5.75690 5.87082 5.92068 5.96182 6.02644 6.05320 6.08462 6.11399 6.22191 6.29135 6.34910 6.44737 6.48079 6.63490 6.65785 6.70384 6.72556 6.84391 7.01323 7.40136 7.86500 7.96784 8.33818 8.54837 8.94645 9.72400 10.10054 11.21779 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.003483 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.094126 B = 8036.523628 C = 8718.906374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.064 4.064 4 C 0.157 3.843 5 C -0.291 4.291 6 C 0.595 3.405 7 O -0.553 6.553 8 N -0.712 5.712 9 C 0.163 3.837 10 H 0.079 0.921 11 C -0.146 4.146 12 C 0.151 3.849 13 N -0.605 5.605 14 C -0.258 4.258 15 H 0.086 0.914 16 C 0.022 3.978 17 N -0.909 5.909 18 Si 0.882 3.118 19 H -0.289 1.289 20 H -0.304 1.304 21 H -0.270 1.270 22 C 0.133 3.867 23 C -0.119 4.119 24 H 0.088 0.912 25 C -0.144 4.144 26 C 0.084 3.916 27 N -0.299 5.299 28 N -0.365 5.365 29 C 0.097 3.903 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.398 0.602 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.022 0.978 42 H 0.262 0.738 43 H 0.074 0.926 44 H 0.020 0.980 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.188 0.812 49 H 0.077 0.923 50 H 0.093 0.907 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.306 6.823 -19.727 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.102 4.102 4 C 0.025 3.975 5 C -0.305 4.305 6 C 0.383 3.617 7 O -0.433 6.433 8 N -0.362 5.362 9 C 0.059 3.941 10 H 0.097 0.903 11 C -0.186 4.186 12 C 0.025 3.975 13 N -0.328 5.328 14 C -0.386 4.386 15 H 0.103 0.897 16 C -0.177 4.177 17 N -0.552 5.552 18 Si 0.712 3.288 19 H -0.217 1.217 20 H -0.232 1.232 21 H -0.195 1.195 22 C 0.007 3.993 23 C -0.140 4.140 24 H 0.106 0.894 25 C -0.202 4.202 26 C -0.103 4.103 27 N -0.118 5.118 28 N -0.144 5.144 29 C -0.045 4.045 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.205 0.795 49 H 0.096 0.904 50 H 0.111 0.889 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.299 6.780 -20.643 26.011 hybrid contribution 0.940 0.573 -0.065 1.103 sum -13.359 7.353 -20.708 25.717 Atomic orbital electron populations 1.21733 0.95006 1.01899 1.01985 1.21393 0.96248 0.94930 1.02475 1.20543 0.85745 0.99196 1.04761 1.21504 0.94538 0.95241 0.86240 1.20090 0.92674 1.23866 0.93900 1.17122 0.85537 0.75589 0.83483 1.90693 1.16403 1.51939 1.84291 1.45927 1.09611 1.74606 1.06102 1.20858 0.97214 0.96855 0.79186 0.90255 1.22370 0.99213 0.95684 1.01319 1.20881 0.86811 0.95186 0.94600 1.44361 1.36859 1.05558 1.46050 1.18938 0.92743 1.14331 1.12577 0.89677 1.25280 0.96550 0.98746 0.97091 1.69835 1.14035 1.48868 1.22484 0.86958 0.79025 0.79211 0.83588 1.21661 1.23246 1.19494 1.21347 0.94827 0.85054 0.98050 1.21964 0.97494 0.94454 1.00093 0.89386 1.21782 1.01284 0.96086 1.01060 1.24064 0.97448 0.96861 0.91968 1.77193 0.95881 1.25429 1.13317 1.48339 1.04129 1.55719 1.06254 1.21936 1.01284 1.03677 0.77563 0.92002 0.92508 0.92991 0.90730 0.92725 0.91026 0.86881 0.76680 0.91087 0.92077 0.92058 0.96012 0.92809 0.90769 0.96190 0.92960 0.92604 0.93061 0.79493 0.90419 0.88869 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.11 -1.02 5.92 -26.73 -0.16 -1.18 16 3 C -0.06 -0.61 4.67 -27.88 -0.13 -0.74 16 4 C 0.16 1.86 6.26 -81.60 -0.51 1.34 16 5 C -0.29 -3.97 6.13 -105.07 -0.64 -4.62 16 6 C 0.60 9.02 7.78 -12.52 -0.10 8.92 16 7 O -0.55 -9.32 14.50 5.27 0.08 -9.25 16 8 N -0.71 -10.66 3.59 -54.84 -0.20 -10.85 16 9 C 0.16 2.60 2.21 -67.89 -0.15 2.45 16 10 H 0.08 1.27 7.57 -51.93 -0.39 0.88 16 11 C -0.15 -2.48 5.77 -26.61 -0.15 -2.64 16 12 C 0.15 2.97 6.26 -3.71 -0.02 2.94 16 13 N -0.60 -13.86 2.77 -172.32 -0.48 -14.34 16 14 C -0.26 -7.07 10.04 -15.06 -0.15 -7.22 16 15 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 16 C 0.02 0.63 5.24 -17.43 -0.09 0.54 16 17 N -0.91 -27.67 13.97 55.49 0.78 -26.89 16 18 Si 0.88 21.85 24.35 -169.99 -4.14 17.71 16 19 H -0.29 -6.89 6.70 56.52 0.38 -6.51 16 20 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 21 H -0.27 -6.42 6.45 56.52 0.36 -6.05 16 22 C 0.13 2.73 3.18 -3.71 -0.01 2.72 16 23 C -0.12 -2.00 2.67 -90.50 -0.24 -2.24 16 24 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 25 C -0.14 -2.06 9.05 37.16 0.34 -1.72 16 26 C 0.08 1.10 11.50 -16.99 -0.20 0.91 16 27 N -0.30 -3.97 12.50 30.86 0.39 -3.59 16 28 N -0.37 -4.01 3.98 -63.34 -0.25 -4.26 16 29 C 0.10 0.60 11.06 59.85 0.66 1.26 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.50 7.71 -51.93 -0.40 0.10 16 36 H 0.11 1.30 6.50 -51.93 -0.34 0.96 16 37 H 0.40 5.81 5.69 -40.82 -0.23 5.58 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 41 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.07 1.70 4.49 -51.93 -0.23 1.47 16 44 H 0.02 0.40 5.48 -51.93 -0.28 0.11 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.05 0.69 7.54 -51.93 -0.39 0.30 16 48 H 0.19 2.11 7.50 -52.49 -0.39 1.71 16 49 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.09 0.37 7.63 -51.93 -0.40 -0.02 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -32.98 393.42 -7.66 -40.64 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -8.57 Total: 4.95 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -1.19 Total: -0.05 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.23 Total: -59.93 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.14 Total: 17.71 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.98 -7.66 -40.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942218683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.433 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds