Wall clock time and date at job start Tue Mar 31 2020 19:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46875 * 2 1 4 4 C 1.50693 * 109.47063 * 179.97438 * 3 2 1 5 5 C 1.38048 * 126.29331 * 270.00614 * 4 3 2 6 6 C 1.47426 * 126.41237 * 359.93064 * 5 4 3 7 7 O 1.21609 * 120.00233 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99918 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00041 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.45653 * 325.02716 * 9 8 6 11 11 C 1.53038 * 109.46040 * 84.99911 * 9 8 6 12 12 C 1.53195 * 109.31380 * 58.65355 * 11 9 8 13 13 N 1.46925 * 108.77181 * 54.63375 * 12 11 9 14 14 C 1.36941 * 120.63250 * 126.37087 * 13 12 11 15 15 H 1.08005 * 119.99378 * 332.80085 * 14 13 12 16 16 C 1.38809 * 120.00409 * 152.79853 * 14 13 12 17 17 N 1.31624 * 119.99981 * 159.75741 * 16 14 13 18 18 Si 1.86797 * 119.99997 * 339.76496 * 16 14 13 19 19 H 1.48503 * 109.47062 * 94.89523 * 18 16 14 20 20 H 1.48496 * 109.46907 * 214.89722 * 18 16 14 21 21 H 1.48502 * 109.46899 * 334.89738 * 18 16 14 22 22 C 1.46927 * 118.73992 * 306.39328 * 13 12 11 23 23 C 1.53031 * 109.45899 * 205.06797 * 9 8 6 24 24 H 1.09005 * 109.49981 * 181.39277 * 23 9 8 25 25 C 1.53004 * 109.49955 * 61.29777 * 23 9 8 26 26 C 1.41291 * 107.16871 * 179.97438 * 5 4 3 27 27 N 1.30435 * 108.02675 * 359.97438 * 26 5 4 28 28 N 1.34259 * 126.29063 * 89.68831 * 4 3 2 29 29 C 1.46505 * 125.75533 * 0.02562 * 28 4 3 30 30 H 1.09001 * 109.47561 * 300.00034 * 1 2 3 31 31 H 1.08999 * 109.46989 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47434 * 59.99987 * 1 2 3 33 33 H 1.08999 * 109.46818 * 119.99627 * 2 1 3 34 34 H 1.08991 * 109.47056 * 240.00146 * 2 1 3 35 35 H 1.09003 * 109.47100 * 300.00217 * 3 2 1 36 36 H 1.09001 * 109.47054 * 59.99655 * 3 2 1 37 37 H 0.96997 * 119.99835 * 359.97438 * 8 6 5 38 38 H 1.08998 * 109.49789 * 178.60940 * 11 9 8 39 39 H 1.09001 * 109.50071 * 298.70506 * 11 9 8 40 40 H 1.08994 * 109.59199 * 174.41945 * 12 11 9 41 41 H 1.09000 * 109.58733 * 294.84939 * 12 11 9 42 42 H 0.96996 * 119.99914 * 180.02562 * 17 16 14 43 43 H 1.09005 * 109.58448 * 173.39348 * 22 13 12 44 44 H 1.09002 * 109.58826 * 293.81593 * 22 13 12 45 45 H 1.08994 * 109.47253 * 59.99565 * 25 23 9 46 46 H 1.08994 * 109.47167 * 179.97438 * 25 23 9 47 47 H 1.09000 * 109.47131 * 299.99997 * 25 23 9 48 48 H 1.08000 * 125.98319 * 180.02562 * 26 5 4 49 49 H 1.08992 * 109.46910 * 89.99711 * 29 28 4 50 50 H 1.08994 * 109.46900 * 210.00159 * 29 28 4 51 51 H 1.09001 * 109.46578 * 329.99801 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3636 1.4427 1.1136 6 6 3.9247 1.4442 2.5211 7 8 2.7383 1.4450 2.7881 8 7 4.8384 1.4446 3.5119 9 6 4.4023 1.4455 4.9105 10 1 3.4904 2.0348 5.0061 11 6 4.1302 0.0083 5.3606 12 6 5.4045 -0.8252 5.1925 13 7 6.5005 -0.1641 5.9140 14 6 7.2395 -0.8498 6.8408 15 1 6.8020 -1.6828 7.3711 16 6 8.5507 -0.4745 7.0986 17 7 9.1298 -0.8365 8.2238 18 14 9.4935 0.5445 5.8487 19 1 9.3842 1.9834 6.1996 20 1 10.9223 0.1401 5.8570 21 1 8.9234 0.3201 4.4960 22 6 6.7883 1.2470 5.6226 23 6 5.4984 2.0571 5.7859 24 1 5.1849 2.0356 6.8296 25 6 5.7467 3.5045 5.3564 26 6 5.6987 1.4421 0.6513 27 7 5.6742 1.4412 -0.6528 28 7 4.3420 1.4366 -1.0812 29 6 3.8910 1.4293 -2.4751 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.6766 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 5.7847 1.4435 3.2989 38 1 3.8295 0.0060 6.4083 39 1 3.3332 -0.4189 4.7520 40 1 5.2459 -1.8223 5.6032 41 1 5.6558 -0.8992 4.1345 42 1 10.0459 -0.5739 8.4041 43 1 7.5426 1.6170 6.3171 44 1 7.1525 1.3420 4.5997 45 1 4.8280 4.0799 5.4700 46 1 6.5271 3.9399 5.9805 47 1 6.0616 3.5251 4.3131 48 1 6.5843 1.4416 1.2695 49 1 3.7794 2.4551 -2.8261 50 1 4.6257 0.9119 -3.0919 51 1 2.9322 0.9154 -2.5439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942218683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:03 Heat of formation + Delta-G solvation = 27.840557 kcal Electronic energy + Delta-G solvation = -30543.158477 eV Core-core repulsion = 26671.463757 eV Total energy + Delta-G solvation = -3871.694720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.54508 -40.95897 -39.01554 -36.32707 -35.83264 -34.34669 -33.71555 -33.58342 -32.03938 -31.41204 -28.34865 -27.56725 -27.41079 -26.85929 -24.42086 -23.59038 -22.67352 -22.46649 -21.75586 -20.62057 -20.18803 -18.85689 -18.61697 -17.28297 -16.93788 -16.70326 -16.53033 -16.05037 -15.82779 -15.78317 -15.59692 -15.19410 -14.99506 -14.88675 -14.65283 -14.42630 -14.33299 -14.00727 -13.83753 -13.55741 -13.53845 -13.42911 -13.10860 -13.05341 -12.97370 -12.56589 -12.42551 -12.28854 -12.17250 -12.06792 -11.93656 -11.92269 -11.57143 -11.51649 -11.48823 -11.25924 -10.75848 -10.63512 -10.40128 -10.00226 -9.56177 -8.89886 -8.13732 -5.46011 0.50590 1.12967 1.32159 1.40751 1.44114 1.52631 2.38557 2.44132 2.52164 3.07455 3.35008 3.46739 3.50350 3.74061 3.89569 4.00320 4.03730 4.08797 4.12941 4.19109 4.31727 4.38164 4.39600 4.44573 4.51909 4.57511 4.60079 4.64107 4.66113 4.69336 4.80134 4.87038 4.91392 4.93853 4.98490 5.05171 5.07921 5.15985 5.22202 5.24715 5.32712 5.34745 5.37227 5.42069 5.44011 5.68868 5.89064 5.89749 6.14930 6.48585 6.70542 6.93489 7.38707 7.64240 8.04191 9.06223 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.003483 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.094126 B = 8036.523628 C = 8718.906374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.059 4.059 4 C 0.162 3.838 5 C -0.318 4.318 6 C 0.597 3.403 7 O -0.574 6.574 8 N -0.709 5.709 9 C 0.172 3.828 10 H 0.086 0.914 11 C -0.135 4.135 12 C 0.152 3.848 13 N -0.616 5.616 14 C -0.248 4.248 15 H 0.048 0.952 16 C -0.037 4.037 17 N -0.960 5.960 18 Si 0.946 3.054 19 H -0.272 1.272 20 H -0.316 1.316 21 H -0.251 1.251 22 C 0.130 3.870 23 C -0.110 4.110 24 H 0.077 0.923 25 C -0.139 4.139 26 C 0.079 3.921 27 N -0.322 5.322 28 N -0.359 5.359 29 C 0.083 3.917 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.401 0.599 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.032 0.968 42 H 0.261 0.739 43 H 0.051 0.949 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.199 0.801 49 H 0.096 0.904 50 H 0.099 0.901 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.668 8.650 -23.199 29.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.098 4.098 4 C 0.028 3.972 5 C -0.333 4.333 6 C 0.386 3.614 7 O -0.455 6.455 8 N -0.360 5.360 9 C 0.067 3.933 10 H 0.104 0.896 11 C -0.175 4.175 12 C 0.027 3.973 13 N -0.340 5.340 14 C -0.377 4.377 15 H 0.066 0.934 16 C -0.231 4.231 17 N -0.606 5.606 18 Si 0.774 3.226 19 H -0.199 1.199 20 H -0.245 1.245 21 H -0.175 1.175 22 C 0.005 3.995 23 C -0.131 4.131 24 H 0.095 0.905 25 C -0.196 4.196 26 C -0.108 4.108 27 N -0.141 5.141 28 N -0.138 5.138 29 C -0.056 4.056 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.237 0.763 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.215 0.785 49 H 0.115 0.885 50 H 0.118 0.882 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.690 8.631 -24.175 30.085 hybrid contribution 1.239 -0.070 0.967 1.573 sum -14.451 8.561 -23.208 28.649 Atomic orbital electron populations 1.21710 0.93778 1.02310 1.02485 1.21340 0.97252 0.94412 1.01592 1.20571 0.84255 0.99523 1.05421 1.21818 0.95461 0.93845 0.86108 1.20083 0.93488 1.26205 0.93519 1.17313 0.85139 0.74842 0.84059 1.90684 1.17200 1.52938 1.84691 1.45836 1.09781 1.74803 1.05567 1.20689 0.97120 0.95762 0.79696 0.89596 1.22240 0.97780 0.96263 1.01237 1.20944 0.86952 0.94972 0.94447 1.44430 1.37020 1.06779 1.45777 1.18848 0.93119 1.13329 1.12428 0.93401 1.25926 0.97493 1.01078 0.98633 1.69977 1.14309 1.51738 1.24572 0.85921 0.76545 0.78447 0.81686 1.19856 1.24528 1.17488 1.21424 0.96227 0.83835 0.98048 1.21816 0.95596 0.95745 0.99904 0.90458 1.21740 1.02286 0.94017 1.01599 1.24256 0.97682 0.96679 0.92154 1.77137 0.97466 1.26132 1.13407 1.48694 1.03240 1.54199 1.07648 1.22388 1.02615 1.05447 0.75169 0.93191 0.92190 0.90780 0.93919 0.91279 0.87701 0.88820 0.76339 0.91632 0.91410 0.93324 0.95034 0.93048 0.93067 0.94508 0.91248 0.92498 0.92003 0.78473 0.88549 0.88209 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.11 -1.74 5.92 30.60 0.18 -1.56 16 3 C -0.06 -0.98 4.67 29.85 0.14 -0.84 16 4 C 0.16 3.46 6.26 42.14 0.26 3.72 16 5 C -0.32 -8.18 6.13 -20.15 -0.12 -8.31 16 6 C 0.60 17.24 7.78 86.66 0.67 17.91 16 7 O -0.57 -18.70 14.50 -4.06 -0.06 -18.76 16 8 N -0.71 -19.92 3.59 -445.68 -1.60 -21.52 16 9 C 0.17 5.20 2.21 45.01 0.10 5.30 16 10 H 0.09 2.57 7.57 -2.39 -0.02 2.56 16 11 C -0.14 -4.51 5.77 30.67 0.18 -4.33 16 12 C 0.15 5.93 6.26 86.36 0.54 6.47 16 13 N -0.62 -28.20 2.77 -699.09 -1.94 -30.14 16 14 C -0.25 -13.99 10.04 84.03 0.84 -13.14 16 15 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 16 C -0.04 -2.14 5.24 84.86 0.44 -1.70 16 17 N -0.96 -60.46 13.97 21.65 0.30 -60.16 16 18 Si 0.95 45.36 24.35 68.60 1.67 47.03 16 19 H -0.27 -12.21 6.70 99.48 0.67 -11.55 16 20 H -0.32 -15.70 7.11 99.48 0.71 -14.99 16 21 H -0.25 -11.11 6.45 99.48 0.64 -10.47 16 22 C 0.13 5.13 3.18 86.36 0.27 5.40 16 23 C -0.11 -3.51 2.67 -10.72 -0.03 -3.54 16 24 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 25 C -0.14 -3.57 9.05 71.98 0.65 -2.92 16 26 C 0.08 1.94 11.50 85.65 0.99 2.92 16 27 N -0.32 -7.90 12.50 -56.28 -0.70 -8.60 16 28 N -0.36 -6.91 3.98 -354.32 -1.41 -8.32 16 29 C 0.08 0.73 11.06 127.77 1.41 2.14 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.03 7.71 -2.39 -0.02 1.01 16 36 H 0.09 2.00 6.50 -2.39 -0.02 1.99 16 37 H 0.40 10.80 5.69 -92.71 -0.53 10.28 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 41 H 0.03 1.19 7.74 -2.39 -0.02 1.17 16 42 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.05 2.28 4.49 -2.38 -0.01 2.27 16 44 H 0.04 1.35 5.48 -2.39 -0.01 1.34 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.06 1.47 7.54 -2.39 -0.02 1.45 16 48 H 0.20 4.09 7.50 -2.91 -0.02 4.06 16 49 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.11 0.44 7.63 -2.39 -0.02 0.42 16 Total: -1.00 -73.33 393.42 3.80 -69.53 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.29 Total: 24.56 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 7.25 Total: 6.38 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -5.35 Total: -128.74 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.06 Total: -18.76 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.67 Total: 47.03 kcal Total: -73.33 3.80 -69.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942218683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.373 kcal (2) G-P(sol) polarization free energy of solvation -73.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds